Gvermi5577.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5577.t1
Unique Name	Gvermi5577.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	299

Homology

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A2V3IX46_9FLOR (Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX46_9FLOR)

HSP 1 Score: 434 bits (1116), Expect = 2.550e-151
Identity = 222/297 (74.75%), Postives = 247/297 (83.16%), Query Frame = 0

Query:    1 MFSSPNSKREDPPARERLPNYLLSAATLTPSPDDQPSATFYTPSKSAPQRRFPTRSETPPIFAPRTPLTFNDRLRPDRPLEEQRTTRTFTPSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPGASLTPSSLSTRTPTLGPQDRWITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNVAKLADEQIEKGVLIASPGAANVSPFSNSMPLPSASPIHPLKTPSSMIRRENHTSNTTPTILRTPQRQSGIFDFLSGLY 297
            MF SP++ R+D    ERLPNYLLS++  TP+ D   S  F TP+K  PQRR  TR E P +FA RTPLTFNDRLRPDRP +    +RTF PS+KPRTPHVPPNKSLLDTGPPSVRVLRSPSASP  SLTP+SLS RTPTLGPQDRWITVFGF PAM+AQALREFRRHGEIVRT+PGKGNWVHILYRTPLQAQVALQRPWRILAGTETM+GA+PCTEPNVAKLADEQIEKG+LIASP  A  +PF    P PSA+PI+ LKTPS+M+RRE  T +  PT++RTPQRQSGIFDF SG Y
Sbjct:    1 MFPSPSNARDDDHTTERLPNYLLSSSA-TPALDQPSSHLFQTPAKYTPQRRLSTRPEAPQLFARRTPLTFNDRLRPDRPDDHSTASRTFMPSTKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPATSLTPNSLSARTPTLGPQDRWITVFGFGPAMEAQALREFRRHGEIVRTMPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMVGAMPCTEPNVAKLADEQIEKGMLIASPSVATSAPFGTPAPPPSATPINSLKTPSTMLRREPATVSE-PTVIRTPQRQSGIFDFFSGFY 295

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A7S0G7K2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7K2_9RHOD)

HSP 1 Score: 97.4 bits (241), Expect = 1.330e-19
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0

Query:  127 SLTPSSLSTRTPTLGPQDRWITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAV 212
            +LT  + S  TP     DRW+TVFGF  +M +  LREFR HGEI R + GKGNW+HILYRT LQAQVAL R  R++ G ET++G +
Sbjct:  188 NLTSPTASMGTPDPETADRWVTVFGFGQSMQSLILREFRNHGEIDRHVSGKGNWMHILYRTALQAQVALSRRVRLIGG-ETLVGVI 272

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A7J7IF51_9RHOD (Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF51_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 5.070e-16
Identity = 52/130 (40.00%), Postives = 67/130 (51.54%), Query Frame = 0

Query:  101 PPNKSLLDT-----------GPPSVRVLRSPSASPGASLTPSSLSTRTPTLGPQDRWITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNV 219
            PPN+S +DT           G P   + R    +P    +P S  T     G   RW+TVFGFAP   +Q LRE R  G+++     KGNW+H+ + +PLQAQ A  R  R L     MIG VPCTEP +
Sbjct:  141 PPNESWMDTAHAAGRHRAETGTPMSNMARG-LFTPAPPASPDSSRTSPLQEGELSRWVTVFGFAPGQQSQVLRELRSFGQVLEHRLRKGNWMHVRFESPLQAQAACSRSSR-LVNDAMMIGIVPCTEPEL 268

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: M1UT25_CYAM1 (RRM Nup35-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT25_CYAM1)

HSP 1 Score: 86.7 bits (213), Expect = 9.670e-16
Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = 0

Query:   91 PSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPGASLTPSSLSTRTPTLGPQDR-----------WITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPN 218
            PS +      PPN S LDT  P    L + + + G +L     +    T    DR           W+TVFGFAP   +Q LRE R  G ++     KGNW+H+ Y +PLQAQ A  R  R+L    TMIG VPCTEP 
Sbjct:  132 PSVRSAGGRAPPNTSWLDTETPVSSRLGAGAETTGPALARGLFTPGLRTTLDADRSSPLQESELACWVTVFGFAPGQQSQVLRELRSFGPVLEHRLRKGNWMHVRYESPLQAQAACSRSSRLLNDV-TMIGIVPCTEPE 269

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: UPI001B88D5DA (nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D5DA)

HSP 1 Score: 70.9 bits (172), Expect = 2.630e-10
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 0

Query:  144 DRWITVFGFAPAMDAQALREFRRHGEIVRTIPG-KGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNVAKLADEQIEKGVLIASPG---AANVSPFSNSMPLPSAS---PIHPL 259
            + W+TVFGF P+  +  L++F ++G+I++ +   +GNW+HI Y++ +QA+ AL +  +I  GT  M+G +PC + N+  L D +  K +   +P     AN     N+  + + S   PI PL
Sbjct:  182 ETWVTVFGFVPSSMSFILQQFAQYGDIIKYVAATEGNWMHIHYKSRIQAKKALSKNGKIFEGT-IMVGVLPCIDKNI--LEDFRDAKDMSCTTPAMLQTANTPSMLNNSSIKTTSTGTPIRPL 301

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A7S1XBP0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBP0_9RHOD)

HSP 1 Score: 70.1 bits (170), Expect = 4.320e-10
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0

Query:  146 WITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHIL 184
            WITVFGF  AM +  LREFR HGEIVR IPGKGNW+HIL
Sbjct:  266 WITVFGFGSAMQSVVLREFRAHGEIVRHIPGKGNWIHIL 304

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A5J4YR06_PORPP (Nucleoporin NUP53 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR06_PORPP)

HSP 1 Score: 68.6 bits (166), Expect = 2.430e-9
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 0

Query:  146 WITVFGFAPAMDAQALREFRRHGEIVRTI-PGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPN 218
            W+TVFGF   + +  L EFR +G+++  + P +GNW+H+ YR+ ++AQVAL +  R+L G + M+G   CT  +
Sbjct:  332 WVTVFGFPSDLVSGVLGEFRSYGDVLNCVSPPRGNWIHVRYRSRIEAQVALSKRVRLLFG-DVMVGVCECTRTH 404

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A6A5C926_NAEFO (RRM Nup35-type domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C926_NAEFO)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-7
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 0

Query:  124 PGASLTPSSLSTRTPTLGPQDRWITVFGFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNVAKL 222
            P   +T  +L++R   +     W+TVFGF P   +  L++F  +G I+      GN++HI Y+T +QA  AL +  +I  G   MIG V C +  + +L
Sbjct:  146 PFYQVTDVALASRINDIVKDTTWVTVFGFPPDKTSYILKQFSNYGTIINHKITNGNFIHIQYKTRIQADKALSKNGKIFDGV-LMIGVVECLDTEILQL 243

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: UPI000C20E35C (nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20E35C)

HSP 1 Score: 61.6 bits (148), Expect = 2.880e-7
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0

Query:  146 WITVFGFAPAMDAQALREFRRHGEIV-RTIPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNVAKLADEQIEKGVLIASPGAANVSPFSNSMPLPSASPIHPLKTP 262
            W+TVFGF P+  +  L +   +G IV +  P +GNW+H+ Y +PL+A  AL    ++++ +  MIG VP    N ++   E +E  V  ++P  A     S   P PS SP+ P   P
Sbjct:  170 WVTVFGFPPSATSLVLAQLANYGSIVDKKFPTQGNWIHLKYSSPLEANKALALHGKLISNS-IMIGVVPFVNKNKSEN-KENMENDV--STPVRARSLRQSYITPQPS-SPVVPQNVP 282

[Close]

BLAST of Gvermi5577.t1 vs. uniprot
Match: A0A0D2VNR2_CAPO3 (RRM Nup35-type domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VNR2_CAPO3)

HSP 1 Score: 60.8 bits (146), Expect = 5.400e-7
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0

Query:  144 DRWITVFGFAPAMDAQALREFRRHGEIVRTI--PGKGNWVHILYRTPLQAQVALQRPWRILAGTETMIGAVPCTEPNVAKLADEQIEKGVLIASPGA 238
            D W+TVFGF P   +  L    + G+IVR +  P  GNW+H+ +++ LQA+ A+ R  +++A +  M+G  PC +  V    D+    G+ + +P A
Sbjct:  168 DVWVTVFGFPPTAASLVLSYLEQCGDIVRHMMAPDGGNWMHVRFKSHLQAERAISRNRKVVARS-IMLGVAPCEDRGVLA-GDKSAAAGLDLTAPRA 262

The following BLAST results are available for this feature:

BLAST of Gvermi5577.t1 vs. uniprot

BLAST of Gvermi5577.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A2V3IX46_9FLOR	2.550e-151	74.75	Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda Ta...	[more]
A0A7S0G7K2_9RHOD	1.330e-19	55.81	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7J7IF51_9RHOD	5.070e-16	40.00	Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanens...	[more]
M1UT25_CYAM1	9.670e-16	39.57	RRM Nup35-type domain-containing protein n=2 Tax=c...	[more]
UPI001B88D5DA	2.630e-10	33.33	nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantop...	[more]
A0A7S1XBP0_9RHOD	4.320e-10	76.92	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A5J4YR06_PORPP	2.430e-9	40.54	Nucleoporin NUP53 n=1 Tax=Porphyridium purpureum T...	[more]
A0A6A5C926_NAEFO	1.270e-7	33.33	RRM Nup35-type domain-containing protein n=2 Tax=N...	[more]
UPI000C20E35C	2.880e-7	34.75	nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID...	[more]
A0A0D2VNR2_CAPO3	5.400e-7	34.02	RRM Nup35-type domain-containing protein n=2 Tax=C...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 143..215 e-value: 1.8E-12 score: 47.1
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 141..221 score: 23.012661
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 142..214 e-value: 9.0E-19 score: 69.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..53
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 83..290
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 144..216 e-value: 1.1563E-22 score: 87.2818
IPR017389	Nucleoporin, NUP53	PANTHER	PTHR21527	NUCLEOPORIN NUP35	coord: 83..290
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 143..217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_776	contig	ScGOVlb_776:631428..632324 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5577.t1	Gvermi5577.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_776 631428..632324 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5577.t1 ID=Gvermi5577.t1|Name=Gvermi5577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MFSSPNSKREDPPARERLPNYLLSAATLTPSPDDQPSATFYTPSKSAPQR
RFPTRSETPPIFAPRTPLTFNDRLRPDRPLEEQRTTRTFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPGASLTPSSLSTRTPTLGPQDRWITVF
GFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWR
ILAGTETMIGAVPCTEPNVAKLADEQIEKGVLIASPGAANVSPFSNSMPL
PSASPIHPLKTPSSMIRRENHTSNTTPTILRTPQRQSGIFDFLSGLYG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007846	RRM_NUP35_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR017389	Nucleoporin_NUP53
IPR035979	RBD_domain_sf