Gvermi5480.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5480.t1
Unique NameGvermi5480.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Homology
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A2V3J0B3_9FLOR (Transcription initiation factor TFIID subunit 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0B3_9FLOR)

HSP 1 Score: 236 bits (601), Expect = 1.240e-72
Identity = 158/288 (54.86%), Postives = 188/288 (65.28%), Query Frame = 0
Query:    1 METPSGKPRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEKNPKSPMKRNSPTHNLEASPS-KRQRLSPTQRPNTEPPKM-LNKSSTSG--TINPTAAITSKN--TSSPVKTLGSPAKASPTAGAPSLNRSLQQSSAAPMPAVNPPXXXXXXXXXXXXXXXPNLQKPPQTIQMQT--NAPPVRLATQTTPPPTSWNQPAAA 280
            ME   GKPRDARIIEAILR MGVDQYDPRVVNQLLELLYRYVS VL+DARNVCEHT K QIDAEDIKLAIKS CSHSFLQ PPREVTMR+AAERNSVPLP VDQKAG+SLP+ + QLT Q    V + +  SP+KR SPT NL+ S S KRQRLSP QRP+TEPP++ +N SST    T +P    ++K   + SP      P    P+  +P  + +L  S+   +P   PP               P L    Q  + Q    +P   + +Q+TP  +SWN  +AA
Sbjct:    1 MEAVGGKPRDARIIEAILRTMGVDQYDPRVVNQLLELLYRYVSTVLIDARNVCEHTLKTQIDAEDIKLAIKSGCSHSFLQAPPREVTMRMAAERNSVPLPPVDQKAGISLPHVDLQLTEQLRVKVDDGH-SSPVKRASPTRNLDLSTSPKRQRLSPQQRPHTEPPRLGVNSSSTKAQSTASPARVASAKQALSRSPDAKAAQPV---PSTSSPVRSSNLPHSA---LPQKTPPKLGISRGTATANVVQPTLSTQVQIQRQQQLRQSPLGTIGSQSTP--SSWNPSSAA 279          
BLAST of Gvermi5480.t1 vs. uniprot
Match: Q7XZ91_GRIJA (Transcriptional activation factor TAFII32 (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ91_GRIJA)

HSP 1 Score: 138 bits (347), Expect = 1.840e-36
Identity = 78/148 (52.70%), Postives = 100/148 (67.57%), Query Frame = 0
Query:    4 PSGKP-RDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEKNPKSPMKRNSPTHNLEASPSKR 150
            P+ +P R  R        MGVD YDPRV +QLLELLYR+VS VLLDAR  C+H  K  IDA+D+KLA++S  + +F QPPPR+VTMR+AAERN+VPLP +D +AG++LP    QLT QNY  + + N   P KR+     L  SP+ R
Sbjct:    9 PTNRPSRTTRAQSRPFFTMGVDSYDPRVTHQLLELLYRHVSTVLLDARVCCDHADKPAIDADDVKLALRSRNTFTFTQPPPRDVTMRLAAERNAVPLPPIDARAGVALPPELGQLTRQNYRVMTQSN--RPAKRSR----LSQSPAAR 150          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A7S3ELZ4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELZ4_9RHOD)

HSP 1 Score: 134 bits (338), Expect = 1.600e-35
Identity = 61/115 (53.04%), Postives = 89/115 (77.39%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNY 122
            P+DA+++ AIL+AMGV+ Y+ RVVNQL+ELLYRYV  ++ +AR  CE+  K++I  ED++L+I+S  S+SF QPP REV +++  ERNS+PLP ++ K G+ LP  ++QLT QNY
Sbjct:   18 PKDAQVMAAILKAMGVESYEDRVVNQLMELLYRYVCEIIDEARGYCEYAGKKEIGIEDVRLSIQSRISYSFTQPPSREVLLQLGRERNSIPLPPLEDKVGIQLPPEKHQLTSQNY 132          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A7S0G7F3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7F3_9RHOD)

HSP 1 Score: 136 bits (342), Expect = 2.740e-35
Identity = 71/143 (49.65%), Postives = 98/143 (68.53%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEKNPKSPMKRNSP-THNLEASPSK 149
            PRDA+++ AIL+AMGV+ Y+ RVVNQL+ELLYRYV  ++ +AR  CE+  K+ I  ED++L+I+S  S+SF QPP REV +++  ERNS+PLP ++ K G+ LP  ++QLT QNY    E N   P K   P T +    PSK
Sbjct:   53 PRDAQVMAAILKAMGVESYEDRVVNQLMELLYRYVCEIIDEARGYCEYAGKKDIGIEDVRLSIQSRISYSFTQPPSREVLLQLGRERNSIPLPPLEDKVGIQLPPEKHQLTSQNYQLKVE-NEAPPKKVEKPGTDSKTPPPSK 194          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A1Y1HTJ5_KLENI (Transcription initiation factor TFIID subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTJ5_KLENI)

HSP 1 Score: 129 bits (325), Expect = 9.890e-34
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNY 122
            P+DA++I  ILR+MGV+ Y+PRVVNQLLE +YRY +  L DAR   EH  K  ID +D+KLAI+S  + SF QPPPREV + +A +RNS+PLP+++ + GL LP     LT  NY
Sbjct:   11 PQDAKVIIEILRSMGVENYEPRVVNQLLEFMYRYFTDALSDARTYSEHANKPAIDIDDVKLAIQSRVNFSFTQPPPREVLLELAKQRNSIPLPEIEPRPGLRLPPDVDTLTAPNY 125          
BLAST of Gvermi5480.t1 vs. uniprot
Match: D8R9T7_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9T7_SELML)

HSP 1 Score: 129 bits (324), Expect = 1.620e-33
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYV 125
            PRDAR++ +I+R+MGV +Y+PRVVNQ L++ YRYV+ VL DA+   EH  K  ID ED+KLA++S  +HSF QPPPRE  + +A  RNS+PLP+V    GL+LP  +  LT  NY  +
Sbjct:    4 PRDARVVRSIMRSMGVAEYEPRVVNQFLDMWYRYVAEVLGDAQAYSEHAGKPAIDCEDVKLAVQSRVNHSFSQPPPRETLLELAKVRNSIPLPKVIGGPGLALPPDQDTLTAVNYQLI 121          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A6A2XH19_HIBSY (Transcription initiation factor TFIID subunit 9 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XH19_HIBSY)

HSP 1 Score: 128 bits (322), Expect = 8.150e-33
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEKNPKSP 133
            PRDA+I++++L++MGV++Y+PRV++Q LEL YRYV  VL DA+  CEH  KQ ID +D+KLAI+S  + SF QPPPREV + +A  RN VPLP+     G+ LP  +  L   NY +   K   +P
Sbjct:    9 PRDAKIVKSLLKSMGVEEYEPRVIHQFLELWYRYVVDVLSDAQVYCEHAGKQTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKVPLPKAIPGPGIPLPPEQDILIRTNYQFAIPKKQSAP 134          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A7RR68_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RR68_NEMVE)

HSP 1 Score: 127 bits (319), Expect = 1.470e-32
Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEK 128
            P+DA ++ AIL+ MG+  Y+PRVVNQ+LE  YRY++ VL DA+    H  K++IDA+DI+LAI+S   HS+  PPPR+  + IA ++N  PLPQ+  K+GL LP   Y LTG NY    +K
Sbjct:   27 PKDALVMAAILKEMGISDYEPRVVNQMLEFTYRYITTVLDDAKVYSSHANKKEIDADDIRLAIQSRLDHSYTNPPPRDFLIEIARQKNRTPLPQLQPKSGLRLPPDRYCLTGTNYKLKAQK 147          
BLAST of Gvermi5480.t1 vs. uniprot
Match: A0A7S4MNE3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNE3_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 2.080e-32
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNY 122
            P+DA++I  IL +MGV +Y+PRV+NQ LE +YRYV+ VL DA+   EH  + +ID  D+ LA++S  +HSF QPPPRE+ + +A ++NS+ LP + QK G+ LP  +Y LT  NY
Sbjct:   18 PKDAKVIALILESMGVQEYEPRVINQYLEFMYRYVADVLQDAKIYSEHANRDKIDLSDVTLAVQSRVNHSFTQPPPREILLELAEKKNSIALPCISQKLGVLLPREQYCLTAPNY 132          
BLAST of Gvermi5480.t1 vs. uniprot
Match: UPI00109B7209 (transcription initiation factor TFIID subunit 9B n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B7209)

HSP 1 Score: 129 bits (325), Expect = 9.750e-32
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 0
Query:    8 PRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDARNVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLPQVDQKAGLSLPNPEYQLTGQNYDYVFEKNP 130
            P+DA ++ +ILR MG+  Y+PRVVNQ+LE  YRY++ VL DA+    H  K++ID +D++LAI+S   HS+  PPPR+  + IA ++N VPLPQ+  K+GL LP   Y LTG+NY    +K P
Sbjct:   28 PKDALVMSSILREMGISDYEPRVVNQMLEFTYRYITTVLDDAKVYSTHAGKKEIDTDDVQLAIQSRLDHSYTSPPPRDFLIEIARQKNRVPLPQIQPKSGLRLPPDRYCLTGKNYKVRAQKQP 150          
The following BLAST results are available for this feature:
BLAST of Gvermi5480.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0B3_9FLOR1.240e-7254.86Transcription initiation factor TFIID subunit 9 n=... [more]
Q7XZ91_GRIJA1.840e-3652.70Transcriptional activation factor TAFII32 (Fragmen... [more]
A0A7S3ELZ4_9RHOD1.600e-3553.04Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G7F3_9RHOD2.740e-3549.65Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1Y1HTJ5_KLENI9.890e-3453.91Transcription initiation factor TFIID subunit n=1 ... [more]
D8R9T7_SELML1.620e-3352.54Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
A0A6A2XH19_HIBSY8.150e-3349.21Transcription initiation factor TFIID subunit 9 n=... [more]
A7RR68_NEMVE1.470e-3249.59Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A7S4MNE3_9EUKA2.080e-3249.57Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI00109B72099.750e-3248.78transcription initiation factor TFIID subunit 9B n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003162Transcription initiation factor TAFII31PFAMPF02291TFIID-31kDacoord: 7..124
e-value: 1.3E-41
score: 141.5
IPR003162Transcription initiation factor TAFII31CDDcd07979TAF9coord: 8..124
e-value: 3.03036E-52
score: 165.868
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 8..73
e-value: 2.3E-24
score: 87.4
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 8..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..298
NoneNo IPR availablePANTHERPTHR48068TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTORcoord: 3..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2183923..2184852 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5480.t1Gvermi5480.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2183923..2184852 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5480.t1 ID=Gvermi5480.t1|Name=Gvermi5480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
METPSGKPRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDAR
NVCEHTFKQQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLP
QVDQKAGLSLPNPEYQLTGQNYDYVFEKNPKSPMKRNSPTHNLEASPSKR
QRLSPTQRPNTEPPKMLNKSSTSGTINPTAAITSKNTSSPVKTLGSPAKA
SPTAGAPSLNRSLQQSSAAPMPAVNPPSSVQPLPLAKPPSSVPNLQKPPQ
TIQMQTNAPPVRLATQTTPPPTSWNQPAAASGKVQQPTRQSSNVAGTALP
PPPQQPPPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003162TFIID-31
IPR009072Histone-fold