Gvermi5471.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5471.t1
Unique NameGvermi5471.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length163
Homology
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A2V3IZ75_9FLOR (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ75_9FLOR)

HSP 1 Score: 180 bits (457), Expect = 5.890e-55
Identity = 91/158 (57.59%), Postives = 114/158 (72.15%), Query Frame = 0
Query:    5 HTTCVSIRSKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            H    +  +KLKV +ITIGK++ KDA++D L +EY KRMS VI                      E+VMLMDE+G MPR+S HFSE++FAALE+GGSRLS+++GDADGLP  +L + + R++KVSLS LTFTHKM RLF+YEQLYRATEIR NSKYHK
Sbjct:   34 HAKSATFHAKLKVQLITIGKRSGKDAVFDPLVAEYTKRMSNVIXXXXXXXXXXXXXXXXXXXXXXEAVMLMDEHGPMPRDSIHFSEMIFAALERGGSRLSMIVGDADGLPLSVLEVQNSRVQKVSLSPLTFTHKMARLFIYEQLYRATEIRNNSKYHK 191          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7S1PEQ6_9ALVE (Hypothetical protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1PEQ6_9ALVE)

HSP 1 Score: 103 bits (257), Expect = 9.390e-25
Identity = 66/164 (40.24%), Postives = 93/164 (56.71%), Query Frame = 0
Query:    4 GHTTCVSIRSKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVH-EKAVKHEAAVKLVH-DLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPEL---LAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            G TT  ++R   +V +   GK   K    D    +Y  RM   + V  E A   ++ V  V  DL  + +V+ +D  GD    S+ FS ++++ L+QGGSR+S+VIG A+GLP  L         R+R VSLS +TF H++ RL +YEQLYRA EIRK + YHK
Sbjct:   30 GCTTRCNVRMVCEVTVRIRGKCTKKGTWQDIGCEQYRVRMRSALDVKTEWAANDDSLVSCVQRDLSKQHAVVCLDVQGD-EHTSESFSGLLYSLLQQGGSRVSVVIGGAEGLPDALRPKTGQLSGRVRYVSLSRMTFPHELARLILYEQLYRAVEIRKGTNYHK 192          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7S0NYP8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NYP8_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 1.660e-23
Identity = 63/147 (42.86%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   16 KVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            +V I+++GK  +K+A      +EY KR+ R +++    V+ +AA+        R + +++DE G +  +S+ FSE++F ALE+GG+RLS VIG ADGLP  L    HP +   SLS +T TH+M RL + EQ+YRA EIR+ SKYH+
Sbjct:   47 RVRIVSVGK--TKEAWLQLALAEYMKRV-RTVSLECTWVRDDAALLAE----ARGACIVLDERGKLC-SSREFSEMLFRALEEGGARLSFVIGAADGLPEALRDGPHPLL---SLSRMTLTHQMARLVLAEQIYRACEIRRGSKYHR 182          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7J7IM68_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM68_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 1.920e-23
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = 0
Query:   11 IRSKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAA-VKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            I+++L ++I+  GK  SK    +    EY KR+S    +H+  V+   + V+        E V+ +D +      S+ F+ +VF  LE+GGSR++ VIG A GLP ++L+ AH     +SLSSLTFTH+MVRL + EQ+YRA EIR++S YHK
Sbjct:   28 IQARLHISILAEGK--SKFPWLEEGFREYEKRLSPYAQLHQLWVRDTPSLVRRTRQQRTAERVLALDASRGKSCTSEEFARLVFDELERGGSRITFVIGGATGLPEQVLSEAH---HVLSLSSLTFTHQMVRLILIEQVYRAIEIRRHSPYHK 175          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7S0LRI7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRI7_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 2.290e-23
Identity = 62/147 (42.18%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   16 KVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            +V I+++GK  +K+A      +EY KR+ R++ +    V+ + A  L+ +   +   +++DE G +  +S  FSE++FAA+E+GGSRLS +IG ADGLP EL    HP +   SL  +T TH+M RL + EQ+YRA EIR+ SKYH+
Sbjct:   46 RVRIVSVGK--TKEAWLQQALAEYTKRL-RMVQLEYTWVRDDTA--LIAEA--KGPCIVLDERGKLC-SSAEFSELLFAAIEEGGSRLSFIIGAADGLPAELRNGGHPLL---SLGRMTLTHQMARLLLAEQIYRACEIRRGSKYHR 181          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.030e-23
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 0
Query:    4 GHTTCVSIRSKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLVHDLCPRESVML-MDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            G  TC      L+V I   GKK+  +        EY KR+   + +  K  K ++A  L+  +   + V++ +DE G +  NSK FS++++  LE GGSRL  VIG A+GLPP L   A      +SLS +TFTH+  RL + EQ+YRATEIRK + YHK
Sbjct:   43 GFMTC-----GLEVTIHIRGKKSGGEDWISTGIDEYQKRLRSTLKLQTKWYKDDSA--LIQGVKKEKGVIVTLDERGKL-LNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAK---HLISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A7W1RFH9_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1RFH9_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.210e-22
Identity = 61/147 (41.50%), Postives = 93/147 (63.27%), Query Frame = 0
Query:   16 KVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            K+ I++IGK  +K++  +    EY KR+S++I +     K++  +  +    P  +++ +D NG M  NS+ FS  +    E+GGSRL+IVIG A+GLP +L    HP +  +SLS +TFTH++VRL + EQ+YRA EI K S YHK
Sbjct:    3 KLRILSIGK--TKESWLEEAIDEYLKRLSKIICIEFVWAKNDEQLLALASKEP--TLVCLDANGKM-MNSEAFSTFIVKKFEEGGSRLAIVIGGAEGLPTKLKQ--HPTL--ISLSPMTFTHQLVRLVLVEQIYRAFEIDKGSCYHK 140          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A1X6PD06_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD06_PORUM)

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-22
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 0
Query:   13 SKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVHEKAVKHEAAVKLV------------HDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPR-------IRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            +K +V ++T+G++++KDA+YD     Y  R    + +  + V    A   +                PR  V+ +DE G  P +S  F+ +++  LE+GGSRL  VIG+ADGL P                +  +SLS LT  HK+VRL + EQLYRA+EIR+ SKY+K
Sbjct:   47 AKARVEVVTLGRRSTKDAVYDSAVDMYITRAGPRLDIACRWVAPATAAAALLPSGSDRAGGGKATAGPRAHVICLDEGGSAPASSDAFATLLYDRLERGGSRLVFVIGEADGLSPAFREAVRAAGRGPAGGVEALSLSPLTLPHKLVRLVLVEQLYRASEIRRGSKYNK 215          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.940e-22
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   15 LKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITV----HEKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            L++ +   GKK+ ++   +    EYAKR+  V+ +    H+     EAAV+    +     V+ +DE G    NS  FS+ VF+ LE+GGSRL+ V+G A+GLPP L         K+SLSS+TFTH   R  + EQ+YRA+EIR+ SKYHK
Sbjct:   64 LQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGV-----VVCLDEGGRQ-MNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 209          
BLAST of Gvermi5471.t1 vs. uniprot
Match: A0A5J4YMA3_PORPP (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMA3_PORPP)

HSP 1 Score: 100 bits (248), Expect = 1.380e-21
Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = 0
Query:   11 IRSKLKVNIITIGKKNSKDAMYDCLASEYAKRM--SRVITVHEKAVK-HEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGGSRLSIVIGDADGLPPELLA-IAHPRIRK------VSLSSLTFTHKMVRLFVYEQLYRATEIRKNSKYHK 162
            +R  + V+++T+GKK++K+A  +   +E+A RM  S  + +    +K +E  V  +     R  V+ +DE GD P +S  F+E+ +   E G S ++ VIG ADGLP  +    A PR ++      +SLS LTFTHKM R  + EQ+YRATEIRK S Y+K
Sbjct:  348 VRCLVHVSVLTVGKKSAKEAWAEVPVAEHATRMRGSNAVDLKADYIKDNETLVARLDGDKQRGYVVALDECGDAPGSSAQFAELFYKWAELGNSHITFVIGGADGLPYVIKQDAAAPRTKRKYVQHFLSLSELTFTHKMARALICEQIYRATEIRKGSGYNK 509          
The following BLAST results are available for this feature:
BLAST of Gvermi5471.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ75_9FLOR5.890e-5557.59Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A7S1PEQ6_9ALVE9.390e-2540.24Hypothetical protein n=3 Tax=Vitrella brassicaform... [more]
A0A7S0NYP8_9EUKA1.660e-2342.86Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7J7IM68_9RHOD1.920e-2341.18Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S0LRI7_9EUKA2.290e-2342.18Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2UUR8_9STRA4.030e-2340.63Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7W1RFH9_9BACT1.210e-2241.50Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A1X6PD06_PORUM1.400e-2235.50Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6H5KEB2_9PHAE6.940e-2241.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4YMA3_PORPP1.380e-2139.51Ribosomal RNA large subunit methyltransferase H n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003742RNA methyltransferase RlmHPFAMPF02590SPOUT_MTasecoord: 16..161
e-value: 4.8E-29
score: 101.3
IPR003742RNA methyltransferase RlmHPIRSFPIRSF004505MT_baccoord: 15..162
e-value: 3.1E-26
score: 89.9
IPR003742RNA methyltransferase RlmHPANTHERPTHR33603METHYLTRANSFERASEcoord: 14..162
IPR003742RNA methyltransferase RlmHHAMAPMF_0065823SrRNA_methyltr_Hcoord: 15..162
score: 20.393892
IPR003742RNA methyltransferase RlmHCDDcd18081RlmH-likecoord: 17..162
e-value: 1.42341E-39
score: 129.099
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 15..162
e-value: 1.2E-36
score: 127.8
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 16..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2170390..2170963 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5471.t1Gvermi5471.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2170390..2170963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5471.t1 ID=Gvermi5471.t1|Name=Gvermi5471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MCYGHTTCVSIRSKLKVNIITIGKKNSKDAMYDCLASEYAKRMSRVITVH
EKAVKHEAAVKLVHDLCPRESVMLMDENGDMPRNSKHFSEIVFAALEQGG
SRLSIVIGDADGLPPELLAIAHPRIRKVSLSSLTFTHKMVRLFVYEQLYR
ATEIRKNSKYHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003742RlmH-like
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases