Gvermi5429.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5429.t1
Unique NameGvermi5429.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length347
Homology
BLAST of Gvermi5429.t1 vs. uniprot
Match: A0A2V3J1W2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W2_9FLOR)

HSP 1 Score: 109 bits (273), Expect = 2.640e-23
Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 0
Query:  118 KAAKRTIHSLQFKLQAAESECSRLTAMLTELQPSLLHQQPH-HNPNLPPPH-PHLHHAPPASPAVMSTTAHAAKPHAHMLPSNTFLRSPAFNFESVVPHSSLREAAAASTATRAFTPASEVPRAPIIRHASSWN--------SFSSSAQPLTTPALPLS 266
            K  K+TIHSLQ KLQAAESEC+RL A+L +LQP+LL  Q H  NP+  P H PHL H PP   A   +TA    P A +LPS+   R P  NF++VVPH+S R+A A +    +  P S++P AP++ H+  WN        S+++++  +  P  PLS
Sbjct:  143 KPPKKTIHSLQLKLQAAESECARLVALLAKLQPNLLTHQSHPSNPSSLPHHQPHLQHLPPPPSASHCSTA---APSAQLLPSSG-PRDPPLNFDTVVPHASFRDAVAVAAVPASIAPNSDLPSAPVVHHSVPWNPFPPAQQFSYAAASTAIAHPPAPLS 297          
BLAST of Gvermi5429.t1 vs. uniprot
Match: R7QI34_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI34_CHOCR)

HSP 1 Score: 89.0 bits (219), Expect = 3.630e-16
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0
Query:   57 PPIPVSSEAAVSKPKKLHREVEQRRRMRMAEQIAELRQCVSDPNSGKTDKVSILQDAVAFVKAAKRTIHSLQFKLQAAESECSRLTAML 145
            PP    ++  ++KPKKLHREVEQ+RRMRM +QIA+LRQ VS+PN G+TDKVS+LQD VA+VK            L  +++EC  L ++L
Sbjct:   78 PPQLAVADGGIAKPKKLHREVEQKRRMRMTQQIAQLRQWVSNPNGGRTDKVSVLQDTVAYVKXXXXXXXXXXXALHHSKAECDHLRSLL 166          
The following BLAST results are available for this feature:
BLAST of Gvermi5429.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1W2_9FLOR2.640e-2344.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QI34_CHOCR3.630e-1651.69BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..84
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 75..126
e-value: 3.6E-8
score: 43.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 72..118
e-value: 2.4E-10
score: 40.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 69..120
score: 13.23012
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 68..151
e-value: 6.3E-13
score: 50.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 70..149
IPR045239Transcription factor bHLH95-like, basic helix-loop-helix domainCDDcd11393bHLH_AtbHLH_likecoord: 74..128
e-value: 6.81351E-12
score: 57.9615

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1907459..1938011 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5429.t1Gvermi5429.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1907459..1938011 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5429.t1 ID=Gvermi5429.t1|Name=Gvermi5429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=347bp
LAAAPTAEPWEAPPSQPQQLPLARPDPPLPSRPSPSTPPTPFPLVSNPAS
RSSHRSPPIPVSSEAAVSKPKKLHREVEQRRRMRMAEQIAELRQCVSDPN
SGKTDKVSILQDAVAFVKAAKRTIHSLQFKLQAAESECSRLTAMLTELQP
SLLHQQPHHNPNLPPPHPHLHHAPPASPAVMSTTAHAAKPHAHMLPSNTF
LRSPAFNFESVVPHSSLREAAAASTATRAFTPASEVPRAPIIRHASSWNS
FSSSAQPLTTPALPLSFPSYALKAILIDFRDYISLYTLLRCIGIQVALVK
YRRIQRTMITLSPTRSPITNGLPFATCNPDYQNHIVSDPIEGPNVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
IPR045239bHLH95_bHLH