Gvermi5420.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5420.t1
Unique NameGvermi5420.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length440
Homology
BLAST of Gvermi5420.t1 vs. uniprot
Match: A0A2V3IW98_9FLOR (Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW98_9FLOR)

HSP 1 Score: 469 bits (1206), Expect = 1.040e-159
Identity = 283/451 (62.75%), Postives = 331/451 (73.39%), Query Frame = 0
Query:    1 MVDPSNLRFMRMTPNLRDIVSGLSHPTPDPTTHINDILASPDPAPFYNSLTFASPTFRDLYSSPNPVGSSAL-TPATTSPYESSHNRMQRIAGTRAQMNALFNPPNPFSLDAENHSDSNHDGVISLMSTPDLRHATPHLPLSDPS-PFLRTKPQAEMAHTQSHSQPRESQSSSVTPPPDTSVLSPTTSPEITSKVHLVKPLE------DANTPAPNASSSKESHSKPPSLKPKQSATTEQNKQKNEPQNTKTPVSSSTSLSSALPA--PAVHPLHANTIPFNPAMAGLIPYA--IPAHFSSQMLANAVSAQYSGRPVAFMPGASPNDFLQYNMLAHATAYHLGTAQAMQAAGRALQAGMSPTTPPAKRPEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRTQGTAVRYACRKRIAMVRPRVNGRFATKEEVEECRRAQQ 439
            M+DPSNLR+MRMTPNLRD+VSGLS PTPDP  H++DILASPDP+PFYNSLTFA+P  RDLY S +P+ SSAL T    +  +++  RMQRIAG RA+MNALFN   P + D EN SDSNHDGVISL+STPDLRH+  H+P  D S P+LR+KP+A   +  S SQPR S+SSSVTPPPDTS+LSPTTSPE TS    V  L+      DA     N   SK+  ++      K   T  Q K   +P +   P +SST+LSSAL +  P  H   AN +  NPAMAGLIPYA  +PA FSSQM+A  + A + GRPVAF+PG    D LQYNM+A A A+H GTAQAMQ AGR LQ+ MSPT    KRP+ + GSRKKRRRQML+RSGC+VEQARENRARALKRLR KKSMRTQG +VRYACRKRIAMVRPRVNGRFATKEEVEE RRA+Q
Sbjct:   44 MIDPSNLRYMRMTPNLRDMVSGLSQPTPDPAAHMHDILASPDPSPFYNSLTFATPILRDLYPSHSPITSSALPTHPNNADSDNASRRMQRIAGARAEMNALFNALTPTNPDTENGSDSNHDGVISLISTPDLRHSASHVPSVDTSNPYLRSKPEATPVNHPSDSQPRGSESSSVTPPPDTSILSPTTSPETTSTAQPVTTLKQNCSLTDAVKADDNKHHSKQRDNQNSRTDIKSDPTATQQKSA-KPLSKAAPGTSSTALSSALSSSVPNSHTA-ANAVAMNPAMAGLIPYACSLPAAFSSQMMAGQIPAHFPGRPVAFVPGNPSADLLQYNMMAQAAAFHFGTAQAMQVAGRVLQSTMSPTAAQQKRPDAIGGSRKKRRRQMLERSGCTVEQARENRARALKRLRQKKSMRTQGNSVRYACRKRIAMVRPRVNGRFATKEEVEEVRRARQ 492          
BLAST of Gvermi5420.t1 vs. uniprot
Match: R7Q4Q6_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Q6_CHOCR)

HSP 1 Score: 157 bits (397), Expect = 2.090e-40
Identity = 98/177 (55.37%), Postives = 121/177 (68.36%), Query Frame = 0
Query:  266 ANTIPFNPAMAGLIPYA--IPAHFSSQMLANAVSAQYSGRPVAFMPGASPNDFLQYNMLAHATAYHLGTAQAMQAAGRALQ--AGMSPTTP-PAKRPEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRTQGTAVRYACRKRIAMVRPRVNGRFATKEEVEECRRA 437
            AN    NP MAGL+P+A  +P+     ML    +  Y GRPVAF+ GA+  + +  +M A ATA   G A A  A  R +   AG  P  P PA   E + GSRK+RRRQ+L+RSGC+ EQAR+NRA AL RLR KK++R+Q + VRYACRKRIAMVRPRVNGRFATKEEVEEC+R+
Sbjct:  187 ANAAAMNPGMAGLLPFACAMPSPMG-HMLPPPGAMHYQGRPVAFVTGANGTEIIPMDMFAQATALQYGAA-AQAAMSRMMHPVAGQGPVPPRPAPHFEAIGGSRKRRRRQLLERSGCTEEQARQNRAHALTRLRQKKTLRSQQSKVRYACRKRIAMVRPRVNGRFATKEEVEECKRS 361          
The following BLAST results are available for this feature:
BLAST of Gvermi5420.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IW98_9FLOR1.040e-15962.75Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracil... [more]
R7Q4Q6_CHOCR2.090e-4055.37CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 379..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..377
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..191
IPR010402CCT domainPFAMPF06203CCTcoord: 386..428
e-value: 3.9E-9
score: 36.5
IPR010402CCT domainPROSITEPS51017CCTcoord: 386..428
score: 11.677238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1789621..1790940 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5420.t1Gvermi5420.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1789621..1790940 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5420.t1 ID=Gvermi5420.t1|Name=Gvermi5420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=440bp
MVDPSNLRFMRMTPNLRDIVSGLSHPTPDPTTHINDILASPDPAPFYNSL
TFASPTFRDLYSSPNPVGSSALTPATTSPYESSHNRMQRIAGTRAQMNAL
FNPPNPFSLDAENHSDSNHDGVISLMSTPDLRHATPHLPLSDPSPFLRTK
PQAEMAHTQSHSQPRESQSSSVTPPPDTSVLSPTTSPEITSKVHLVKPLE
DANTPAPNASSSKESHSKPPSLKPKQSATTEQNKQKNEPQNTKTPVSSST
SLSSALPAPAVHPLHANTIPFNPAMAGLIPYAIPAHFSSQMLANAVSAQY
SGRPVAFMPGASPNDFLQYNMLAHATAYHLGTAQAMQAAGRALQAGMSPT
TPPAKRPEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMR
TQGTAVRYACRKRIAMVRPRVNGRFATKEEVEECRRAQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain