Gvermi5335.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5335.t1
Unique NameGvermi5335.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length416
Homology
BLAST of Gvermi5335.t1 vs. uniprot
Match: R7QN20_CHOCR (GATA-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN20_CHOCR)

HSP 1 Score: 336 bits (862), Expect = 3.280e-108
Identity = 199/409 (48.66%), Postives = 259/409 (63.33%), Query Frame = 0
Query:    1 MVKIADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLLFKDDDGNLTAVQRHDALPVHIPPSSKKTSXXXXXXXXXXXX----------PDLSTKRSAIRKIPSEGTIAASFGKKPRSRSRRANAGQLPGRYATKTLPEAVSHLCRSPAASPRS-SPPPAXKRTPSNETQVPPLNFARVHTFN--EPPLSKFIDPEDESMFPDMASLGLDCSPSANNTV-VLQMPVDASCVEEFSFAFTGCGN--SLRIDAPDRREALRGLLVDRTRKVSRTYEATVAALAWLCEQRYHSAKAKQMDGKVSSVGDCRNFVRAFAHEQSCGYALDDDGLCSVD-EVAHMMSRSHSVGVMLAEKAAHCNAVNWFKALVDSSELEGFAEACMVELLAEDVIAALAQQGHAG 392
            M KIADP L L+CVHC +TETPLWRAGPDGPKTLCNACGVRYKKGKL +F+D DGNLTAV++ D LPVH+PP+ KK++                      P     R  +RK+P+EG   A+  KKPRSRSRR NAGQLPGRY++K+LP+ V+    SP  SP+S S  PA  ++P N+  V     AR  +    + PL    DP DE++FPD++ LG+D       TV +L M  D S  E+FSFAF   GN  S+ I  PDR +ALRGL++DRTRKVS  YE+TV  L  LCE+R   +     +G+  ++ DC+N+VR F+ EQ+ G+  + +  C+    ++       + G ML EK A+ +AV   KAL+DSSEL GFAEACM+ELL EDV AAL++   AG
Sbjct:   61 MGKIADPLLKLRCVHCGNTETPLWRAGPDGPKTLCNACGVRYKKGKLTIFRDKDGNLTAVKQEDTLPVHVPPAPKKSNKKLQQHHAPDPPSKSDHSHPSSPSEPAVRRPVRKVPTEGVFTAALAKKPRSRSRRTNAGQLPGRYSSKSLPDDVAQW-HSPLTSPKSFSSSPA--QSPRNDGGVC-FQLARGASALKIDDPLPYHCDPSDEALFPDVSCLGIDSGDDDRTTVKLLPMDADPSSAEQFSFAFGELGNNASVNIGLPDRVKALRGLVLDRTRKVSARYESTVVGLCRLCEERCLRS-CSNGNGQPWTLEDCKNYVRWFSQEQTVGFVANKNSSCNPGISLSDSDEMDITAGFMLPEKTAYTSAVENLKALMDSSELAGFAEACMIELLCEDVAAALSKGVFAG 464          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A2V3J663_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J663_9FLOR)

HSP 1 Score: 327 bits (837), Expect = 1.980e-107
Identity = 177/275 (64.36%), Postives = 207/275 (75.27%), Query Frame = 0
Query:  142 VSHLCRSPAASPRSSPPPAXKRTPSNETQ-VPPLNFARVHTFNEPPLSKFIDPEDESMFPDMASLGLDCSPSANNTVVLQMPVDASCVEEFSFAFTGCGNSLRIDAPDRREALRGLLVDRTRKVSRTYEATVAALAWLCEQRYHSAKAKQMDGKVSSVGDCRNFVRAFAHEQSCGYALDDDGLCSVDEVAHMMSRSHSVGVMLAEKAAHCNAVNWFKALVDSSELEGFAEACMVELLAEDVIAALAQQGHAGFDGEAGCRIGEAAVRAEAVATLA 415
            +SH  RSPA+SP+++    X          VPPL+  R+ T NEPPLSKFIDPE ESMFPDMA LGLDCSP ANNTV+L MP+DAS VE+FSFAF+GC NSL+IDAPDRREALRGL++DRTR+VSR YEATV ALA LCEQR+  A A+    K+S V DCRNFVRAFAHEQS G  L+ DG+   +E    MS    V +ML E+ AHCNA N FKAL+DSSELEGFAEACMVELLAEDVIA LAQQGH  F+ EA CRI +A + ++A+ T A
Sbjct:    1 MSHF-RSPASSPKTTXXXXXXXXXXXXXXXVPPLHVPRLFTVNEPPLSKFIDPEHESMFPDMACLGLDCSPRANNTVLLPMPIDASSVEQFSFAFSGCSNSLKIDAPDRREALRGLVLDRTRRVSRAYEATVVALARLCEQRHLRATARNTTVKLSCVDDCRNFVRAFAHEQSSGIGLEYDGMDVCEETTQRMSTGMGVAMMLPERTAHCNAANCFKALMDSSELEGFAEACMVELLAEDVIAMLAQQGHTDFELEAACRIADAPMASKAIPTPA 274          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A1X6P494_PORUM (GATA-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P494_PORUM)

HSP 1 Score: 80.9 bits (198), Expect = 1.270e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0
Query:   10 GLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLLF 50
            G +CVHC +T TPLWR+GPDGPKTLCNACGVR+KKG+L LF
Sbjct:    4 GYKCVHCSATATPLWRSGPDGPKTLCNACGVRHKKGRLALF 44          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A7N0TUP8_KALFE (GATA-type domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TUP8_KALFE)

HSP 1 Score: 73.2 bits (178), Expect = 3.580e-12
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    3 KIADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKL 47
            K      G +C HC S +TP WRAGPDGPKTLCNACGVRYK G+L
Sbjct:   70 KTTSGITGRKCKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGRL 114          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A166A9U1_DAUCS (GATA-type domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166A9U1_DAUCS)

HSP 1 Score: 72.0 bits (175), Expect = 3.980e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 MVKIADPSL-------GLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLL 48
            M++I + SL       G +C HC S +TP WRAGP GPKTLCNACGVRYK G+LL
Sbjct:    1 MMEIQEESLEDRNGQQGRRCTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRLL 55          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A6M2F356_9ROSI (GATA-type domain-containing protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2F356_9ROSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.140e-12
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    4 IADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLL 48
            ++   LG +C HC   +TP WRAGPDGPKTLCNACGVRYK G+L+
Sbjct:   43 VSVAKLGRKCQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRLV 87          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A2G9GS87_9LAMI (GATA-type domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GS87_9LAMI)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-11
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    2 VKIADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLL 48
            V+ +  S+G +C+HC + +TP WRAGP GPKTLCNACGVRYK G+LL
Sbjct:  199 VRSSGTSMGRRCLHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRLL 245          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A2V3IMZ4_9FLOR (GATA transcription factor 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMZ4_9FLOR)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-11
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 0
Query:   11 LQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKK 44
            ++CVHCH+TETPLWRAGP GPKTLCNACGVR+KK
Sbjct:    1 MRCVHCHTTETPLWRAGPAGPKTLCNACGVRWKK 34          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A6T6AV47_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6AV47_9RHOD)

HSP 1 Score: 77.4 bits (189), Expect = 1.060e-11
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MVKIADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLL 49
            M K ++P   L+C +C+ TETPLWR+GP+GPKTLCNACGVR+KKGKL+L
Sbjct:    1 MAKGSNPER-LRCSNCNKTETPLWRSGPEGPKTLCNACGVRWKKGKLVL 48          
BLAST of Gvermi5335.t1 vs. uniprot
Match: A0A5N5P347_9ROSI (GATA-type domain-containing protein n=2 Tax=Salix TaxID=40685 RepID=A0A5N5P347_9ROSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    4 IADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLL 48
            ++ P +G +C HC   +TP WRAGPDGPKTLCNACGVRYK G+L+
Sbjct:  170 VSVPKMGRKCQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRLV 214          
The following BLAST results are available for this feature:
BLAST of Gvermi5335.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QN20_CHOCR3.280e-10848.66GATA-type domain-containing protein n=1 Tax=Chondr... [more]
A0A2V3J663_9FLOR1.980e-10764.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P494_PORUM1.270e-1278.05GATA-type domain-containing protein n=1 Tax=Porphy... [more]
A0A7N0TUP8_KALFE3.580e-1266.67GATA-type domain-containing protein n=1 Tax=Kalanc... [more]
A0A166A9U1_DAUCS3.980e-1260.00GATA-type domain-containing protein n=2 Tax=Daucus... [more]
A0A6M2F356_9ROSI6.140e-1264.44GATA-type domain-containing protein n=1 Tax=Populu... [more]
A0A2G9GS87_9LAMI1.010e-1163.83GATA-type domain-containing protein n=1 Tax=Handro... [more]
A0A2V3IMZ4_9FLOR1.030e-1185.29GATA transcription factor 9 n=1 Tax=Gracilariopsis... [more]
A0A6T6AV47_9RHOD1.060e-1167.35Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5N5P347_9ROSI1.170e-1164.44GATA-type domain-containing protein n=2 Tax=Salix ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 7..67
e-value: 7.6E-18
score: 75.3
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 13..46
e-value: 8.4E-18
score: 63.7
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 13..38
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 7..43
score: 14.021747
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 12..44
e-value: 6.65592E-15
score: 66.6274
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 9..91
e-value: 1.2E-16
score: 62.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..94
NoneNo IPR availablePANTHERPTHR45658:SF37GATA ZINC FINGER FAMILY PROTEIN, EXPRESSEDcoord: 12..48
NoneNo IPR availablePANTHERPTHR45658GATA TRANSCRIPTION FACTORcoord: 12..48
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 5..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1289166..1290528 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5335.t1Gvermi5335.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1289166..1290528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5335.t1 ID=Gvermi5335.t1|Name=Gvermi5335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=416bp
MVKIADPSLGLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLLF
KDDDGNLTAVQRHDALPVHIPPSSKKTSRKPSSPASQPASPDLSTKRSAI
RKIPSEGTIAASFGKKPRSRSRRANAGQLPGRYATKTLPEAVSHLCRSPA
ASPRSSPPPAPKRTPSNETQVPPLNFARVHTFNEPPLSKFIDPEDESMFP
DMASLGLDCSPSANNTVVLQMPVDASCVEEFSFAFTGCGNSLRIDAPDRR
EALRGLLVDRTRKVSRTYEATVAALAWLCEQRYHSAKAKQMDGKVSSVGD
CRNFVRAFAHEQSCGYALDDDGLCSVDEVAHMMSRSHSVGVMLAEKAAHC
NAVNWFKALVDSSELEGFAEACMVELLAEDVIAALAQQGHAGFDGEAGCR
IGEAAVRAEAVATLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA