Gvermi5247.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5247.t1
Unique NameGvermi5247.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length486
Homology
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BLAST of Gvermi5247.t1 vs. uniprot
Match: A0A2V3J6A9_9FLOR (Luc7-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6A9_9FLOR)

HSP 1 Score: 259 bits (661), Expect = 3.770e-76
Identity = 198/406 (48.77%), Postives = 227/406 (55.91%), Query Frame = 0 
Query:   23 SLFCKHYLLGFCPNDLYIKQRSEPGSCRLEHSEAAKSAFEKDHAEGRVREEDKFRWMRALLNECRTIVAEEDRKIRGQARRLQESYGCGGTLAGLMIRNFDTLKKLGM--------------------------------------------------------PRRTRIQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGFGLIKVIPAGDAPEEKFENLKEKGSEMIEKAADAAPTNASISDNSSSFKKEETVIKVEQAAGKGKKGEPVFKNSSD-LKLVYVSKENDNKDHFISKNDMETDVK-NSSPEGTRAIETKNLNGENLKPNNGGKSYLSKMKPVD-----NKQENNVMDKFYETGIGPDGLLMLDRKQSKRVCACCGGYISLVDAEARLLSHYG 365
            S +CKH+LLGFCPNDLYIKQRSEPGSCR EHSEAAK AF++D  +GRVREE K RWMR LLNEC+ IV+EEDRKIRGQARRLQESYGCGG L  LMIRNFDTLKKLGM                                                        P    + E       XXXXXXXXXXXXXXXXXXXXXXXLDGFGLIKVIPA D P  K  +     +      ++A        ++S S   +     V+      K  E   K  SD           D K   +S N   TD + N++ +     + K     N    N  +   S  KP +     N++ +NVMDKFYE G+GPDGLLMLDRKQSKRVCACCGGYISLVDAE+RLLSHYG
Sbjct:   36 SKYCKHFLLGFCPNDLYIKQRSEPGSCRCEHSEAAKQAFDEDDQKGRVREE-KSRWMRLLLNECQNIVSEEDRKIRGQARRLQESYGCGGDLTALMIRNFDTLKKLGMVSQNAKIRILSEIDDDEIMSNDDATLPHTSMDPSADGSQDVQQLLKLGNNVKQPDHPSVNAVDENKANQNPXXXXXXXXXXXXXXXXXXXXXXXLDGFGLIKVIPASDTPVNKAGDADASKASQPPHQSNADTKVVPSKESSQSLADD-----VKAPVSDKKPPEEQDKQDSDKXXXXXXXXXXDTKPLGVSSNPSITDHEPNTTEQFPNEKDGKTETHTNDVKTNAFEVEKSDDKPAEQESNTNEETDNVMDKFYEAGVGPDGLLMLDRKQSKRVCACCGGYISLVDAESRLLSHYG 435
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BLAST of Gvermi5247.t1 vs. uniprot
Match: R7Q4L4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4L4_CHOCR)

HSP 1 Score: 84.7 bits (208), Expect = 3.390e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:  319 MDKFYETGIGPDGLLMLDRKQSKRVCACCGGYISLVDAEARLLSHYG 365
            M++FY+ G GPDGLLML RKQS RVCACCGG+ISLVDAE+RLLSHYG
Sbjct:  185 MEEFYKKGTGPDGLLMLTRKQSLRVCACCGGFISLVDAESRLLSHYG 231
The following BLAST results are available for this feature:
BLAST of Gvermi5247.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6A9_9FLOR3.770e-7648.77Luc7-like protein n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q4L4_CHOCR3.390e-1480.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004882Luc7-relatedPFAMPF03194LUC7coord: 24..107
e-value: 3.9E-15
score: 56.2
IPR004882Luc7-relatedPANTHERPTHR12375RNA-BINDING PROTEIN LUC7-RELATEDcoord: 25..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:776230..778212 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5247.t1Gvermi5247.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 776230..778212 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5247.t1 ID=Gvermi5247.t1|Name=Gvermi5247.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=486bp
LPRLSLKSSKARSALCAHRVHLSLFCKHYLLGFCPNDLYIKQRSEPGSCR
LEHSEAAKSAFEKDHAEGRVREEDKFRWMRALLNECRTIVAEEDRKIRGQ
ARRLQESYGCGGTLAGLMIRNFDTLKKLGMPRRTRIQEQENNDSGSDSQK
ESGEQDDDDDDDDDDDDDLDGFGLIKVIPAGDAPEEKFENLKEKGSEMIE
KAADAAPTNASISDNSSSFKKEETVIKVEQAAGKGKKGEPVFKNSSDLKL
VYVSKENDNKDHFISKNDMETDVKNSSPEGTRAIETKNLNGENLKPNNGG
KSYLSKMKPVDNKQENNVMDKFYETGIGPDGLLMLDRKQSKRVCACCGGY
ISLVDAEARLLSHYGEDMDVTMNEIMVAPETMTIGGHAGIIAVESDGVVM
MTGTVVPSRVGISTILKEGKVVVRNIQALETYTATAGESVIVLHPHTVGL
GVGEDTTKWDSCLLSCQEAHIRVGPSIHASGFYLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004882Luc7-rel