Gvermi5244.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5244.t1
Unique NameGvermi5244.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length180
Homology
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A2V3J699_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J699_9FLOR)

HSP 1 Score: 130 bits (327), Expect = 2.880e-36
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 0
Query:   88 MPSAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKRLE 175
            MP APHG DC+ALQ F+RLYS RVL ESGF  +AYWDES+T+VIA + FM +AKK ERNN  LRK+RVDA AA+LILQDVLDAMK LE
Sbjct:    1 MPQAPHGGDCKALQTFIRLYSERVLHESGFHGLAYWDESYTSVIATETFMTNAKKSERNNHRLRKRRVDASAASLILQDVLDAMKSLE 88          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A3M2EJP1_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EJP1_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 2.350e-15
Identity = 57/149 (38.26%), Postives = 79/149 (53.02%), Query Frame = 0
Query:   29 GGPLVGMDVGTRHIGVALSDDARLISFPHSAYRR-RSVLSDVHRLRLLAAETQAHCAVVGMP---SAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKR 173
            G PL+G+D GTR IGVA+SD  R I+ P +  RR R +  D+  +  LAA   A   V+G+P       GA C +++ F R      LA    R I  WDE  +TV A     A+  + +R     R++ VD  AAA IL D L+A++R
Sbjct:   19 GAPLIGLDHGTRMIGVAVSDSRRSIASPLTTLRRSRRLTPDLQAIEALAAARGAAAFVLGLPRNMDGSEGARCDSVRSFARS-----LARVSPRPILLWDERLSTVAAHAVLDATDARADR-----RRRLVDRLAAAHILADALEALRR 157          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A7C6LH06_9FIRM (Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6LH06_9FIRM)

HSP 1 Score: 77.8 bits (190), Expect = 5.160e-15
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 0
Query:   32 LVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLD 169
            L+G+D+G R IG+A+SDD  L + P   Y R     D+  L  LA E  A   V G+P    G +     + VR ++ ++  +SG   + + DE FTTVIA +  +A+   RER     R+Q VD  AAALILQ  LD
Sbjct:    7 LIGIDIGERRIGLAVSDDLWLTAQPRGVYHRSGEAKDIDYLVALAREEGAVAFVAGLPKRTTGEEGPEAAK-VRAFTRKLEEKSGL-PVRFADERFTTVIAHNLLLAADTSRER-----RRQVVDKLAAALILQTFLD 137          
BLAST of Gvermi5244.t1 vs. uniprot
Match: UPI000DD2EA7F (Holliday junction resolvase RuvX n=1 Tax=Oceanibium sediminis TaxID=2026339 RepID=UPI000DD2EA7F)

HSP 1 Score: 77.8 bits (190), Expect = 7.130e-15
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   30 GPLVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKRL 174
            GPL+ +D+GT+ IG+ALSD  R I+ PH+  +RR    D   L  L AE      V+G+P    G++    Q   R ++ R LA  G  A  +WDE  +TV A+   + +   R+R     R + +D+ AA++ILQ +LD +  L
Sbjct:   17 GPLLALDLGTKTIGLALSDVRRTIASPHATLKRRKFTLDAEALDKLIAERGVVGIVLGLPRNMDGSEGPRAQS-TRAFA-RNLAARGVPAQLFWDERLSTVAAERALLEADASRKR-----RAEIIDSVAASVILQGLLDRLGHL 154          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A847FLX5_9CHLR (Putative pre-16S rRNA nuclease n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A847FLX5_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 7.790e-15
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 0
Query:   32 LVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHG---ADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMK 172
            L+G+DVG R IGVA+SD   LI+ P     R S + D  R+  L  E QA   VVG P    G   A  + ++++V   +  + AE     I +WDE F+T  A +E +A + +R R     R+  +DA AAA+ILQD LD  +
Sbjct:    3 LLGLDVGDRRIGVAVSDATGLIATPLEIVHRTSRVQDFRRIASLLREQQAGGLVVGHPLNDDGSASAQAQRIERYVATLAEALRAEGLDVPIIFWDERFSTQRA-EEAVALSGRRSRQ----RRGHIDAVAAAVILQDYLDEQR 141          
BLAST of Gvermi5244.t1 vs. uniprot
Match: UPI00166DBCB2 (Holliday junction resolvase RuvX n=1 Tax=Aureimonas endophytica TaxID=2027858 RepID=UPI00166DBCB2)

HSP 1 Score: 77.4 bits (189), Expect = 8.160e-15
Identity = 54/146 (36.99%), Postives = 74/146 (50.68%), Query Frame = 0
Query:   32 LVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMP---SAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKRL 174
            L G+D+GT+ IGVALSD +     P S  RR    +D   L+ L  +TQA   V+G+P       G   ++ + FVR Y      +   R IA+WDE  +TV A    ++    R +     R +RVDA AAA ILQ  LD +  L
Sbjct:   19 LAGLDLGTKTIGVALSDLSWAFGQPRSVIRRTKFTADATALKALLDDTQAGGIVIGLPLNMDGTEGPRVQSTRAFVRNY-----LKFDDRQIAFWDERLSTVAATRAMISMDVSRAK-----RAERVDAAAAAFILQGALDRLASL 154          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A3E0KPE6_9FIRM (Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3E0KPE6_9FIRM)

HSP 1 Score: 77.4 bits (189), Expect = 9.360e-15
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 0
Query:   29 GGPLVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGA---DCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKR 173
            GG  +G+DVG R IGVA+SD+    +   +   RRS+  DV RL  L  E   +  V+G+P    G    +  A+Q F      R L  S    + YWDE F+T  A+   +A+  +R R     RKQ +D  AA++ILQ  LD  +R
Sbjct:   13 GGRTLGLDVGQRRIGVAVSDELGWTAQGLTVIERRSLAEDVRRLVALVKEYGCNGIVIGLPRRTDGRLGPEAEAVQAF-----GRQLEASAGVPVVYWDERFSTAQAEHTLLAAGVRRAR-----RKQVIDQLAASVILQAYLDRRRR 150          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A537QZR6_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QZR6_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 56/145 (38.62%), Postives = 74/145 (51.03%), Query Frame = 0
Query:   29 GGPLVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKR 173
            G  L+G+DVGT+ IG+ALSD   +I+ P    RRR    DV  L  L    +    V+G+P +  G D    Q  VR ++  +LA      +A+WDE  +T     E +A    R+R     R Q VD  AAA ILQ  LDAM R
Sbjct:   16 GRRLMGLDVGTKTIGLALSDTRLVIASPLETIRRRRFREDVAALFALIDRHEVGGLVIGLPLSMDGGDSSRTQS-VRQFARNLLAVRDM-PVAFWDERLSTAAVTREMIAHDMTRKR-----RAQIVDRVAAAYILQGFLDAMGR 153          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A1Y3QP20_9FIRM (Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes bacterium ZCTH02-B6 TaxID=1861639 RepID=A0A1Y3QP20_9FIRM)

HSP 1 Score: 76.3 bits (186), Expect = 2.590e-14
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 0
Query:   26 RQTGGPLVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGA---DCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKR 173
            R  GG  +G+DVG R IGVA+SD+    +   +   RRS+  DV RL  LA +      VVG+P    G    + +A+Q F      R L  +    + YWDE F+T  A+   + +  +R+R     R+Q +D  AA++ILQ  LD  +R
Sbjct:   10 RAAGGRALGLDVGQRRIGVAVSDELGWTAQGVTVIERRSLREDVRRLAALAKQYGCARIVVGLPRRTDGRLGPEAQAVQAF-----GRQLESATGLPVEYWDERFSTAQARHTLLEAGVRRDR-----RRQVIDQLAASVILQAYLDRRRR 150          
BLAST of Gvermi5244.t1 vs. uniprot
Match: A0A3A0ERK8_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0ERK8_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 2.650e-14
Identity = 57/167 (34.13%), Postives = 84/167 (50.30%), Query Frame = 0
Query:   14 MRSELQRFKLHVRQTGGPLVGMDVGTRHIGVALSDDARLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMP---SAPHGADCRALQQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITLRKQRVDAGAAALILQDVLDAMKRLENG 177
            M  ELQ F   +    G L+G+DVGT+ IGVA+SD  R I+ P    +R+ +  D+ RL  LAAE Q    V+G+P       G   ++++QF +    R+        IA WDE ++T     + +A    R++     R + VD  AAA ILQ  LD ++    G
Sbjct:    5 MIMELQDFATML-PPAGRLMGLDVGTKTIGVAVSDATRFIATPLETIQRKKLSPDLDRLAALAAERQVAGIVIGLPVNMDGTMGPRVQSVRQFAKDCGQRLALP-----IALWDERWSTAAVTRQLIAEDASRKK-----RAEVVDRMAAAYILQGALDYLRGQAGG 160          
The following BLAST results are available for this feature:
BLAST of Gvermi5244.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J699_9FLOR2.880e-3672.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A3M2EJP1_9PROT2.350e-1538.26Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo... [more]
A0A7C6LH06_9FIRM5.160e-1539.13Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes ... [more]
UPI000DD2EA7F7.130e-1535.86Holliday junction resolvase RuvX n=1 Tax=Oceanibiu... [more]
A0A847FLX5_9CHLR7.790e-1538.19Putative pre-16S rRNA nuclease n=1 Tax=Anaerolinea... [more]
UPI00166DBCB28.160e-1536.99Holliday junction resolvase RuvX n=1 Tax=Aureimona... [more]
A0A3E0KPE6_9FIRM9.360e-1536.49Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes ... [more]
A0A537QZR6_9PROT1.260e-1438.62Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo... [more]
A0A1Y3QP20_9FIRM2.590e-1435.10Putative pre-16S rRNA nuclease n=1 Tax=Firmicutes ... [more]
A0A3A0ERK8_9PROT2.650e-1434.13Putative pre-16S rRNA nuclease n=1 Tax=Proteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 30..132
e-value: 4.4E-6
score: 36.2
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 34..169
e-value: 2.6E-15
score: 54.6
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 32..169
e-value: 8.4E-23
score: 81.3
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 27..175
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 30..172
score: 16.480608
IPR005227Putative pre-16S rRNA nucleaseCDDcd16964YqgFcoord: 32..170
e-value: 1.16062E-28
score: 101.41
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 31..177
e-value: 8.0E-26
score: 92.6
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 27..175
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 32..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:767660..768315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5244.t1Gvermi5244.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 767660..768315 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5244.t1 ID=Gvermi5244.t1|Name=Gvermi5244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=180bp
MKAFNLIGETHGMMRSELQRFKLHVRQTGGPLVGMDVGTRHIGVALSDDA
RLISFPHSAYRRRSVLSDVHRLRLLAAETQAHCAVVGMPSAPHGADCRAL
QQFVRLYSWRVLAESGFRAIAYWDESFTTVIAKDEFMASAKKRERNNITL
RKQRVDAGAAALILQDVLDAMKRLENGDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf