Gvermi5241.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5241.t1
Unique NameGvermi5241.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length100
Homology
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BLAST of Gvermi5241.t1 vs. uniprot
Match: A0A2V3J767_9FLOR (Cyclin-F n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J767_9FLOR)

HSP 1 Score: 169 bits (428), Expect = 2.850e-52
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 0 
Query:    1 LPDDVLLSIFERLSRASDIAAVRRVCFSWRALVDGTSSIWRSLVFELPRCPTSARYAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPVLPSPPFAV 99
            LPD+VLLSIFERLSR  DIAAVR VC SWRALVD  S+IWRS+VFELPRC +SARYAELWYRKAADYGNAQAQFLLALLYTYGYGRPS+P LP+ P  V
Sbjct:   46 LPDEVLLSIFERLSRVKDIAAVRSVCTSWRALVDTNSAIWRSIVFELPRCRSSARYAELWYRKAADYGNAQAQFLLALLYTYGYGRPSRPALPTHPVIV 144
The following BLAST results are available for this feature:
BLAST of Gvermi5241.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J767_9FLOR2.850e-5282.83Cyclin-F n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 1..42
e-value: 1.9E-6
score: 37.4
IPR001810F-box domainPFAMPF12937F-box-likecoord: 1..45
e-value: 4.4E-11
score: 42.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 1..43
score: 11.670011
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 46..92
e-value: 3.8E-7
score: 32.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..43
e-value: 5.1E-9
score: 37.9
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 56..87
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 1..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:758736..759155 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5241.t1Gvermi5241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 758736..759155 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5241.t1 ID=Gvermi5241.t1|Name=Gvermi5241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=100bp
LPDDVLLSIFERLSRASDIAAVRRVCFSWRALVDGTSSIWRSLVFELPRC
PTSARYAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPVLPSPPFAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR011990TPR-like_helical_dom_sf
IPR036047F-box-like_dom_sf