Gvermi5185.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5185.t1
Unique NameGvermi5185.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length225
Homology
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A2V3J6V5_9FLOR (Transcription elongation factor TFIIS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V5_9FLOR)

HSP 1 Score: 315 bits (806), Expect = 1.950e-106
Identity = 167/231 (72.29%), Postives = 189/231 (81.82%), Query Frame = 0
Query:    1 MADLNKKLSATKTIDKKARASTTPRKQIPAQGA-----DKPPS--SSPKSVDHAESSKEYNVKHPTGDKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            MAD+ KKLSATKTIDKK R  TTP+    A        D  PS  S P   DH     +Y+VKHPTGDKMRDKVR+LL+DAL+ KDE  V SKD+AQ+VA+AIE AMF+KFDG+G +YKQKYRS+SFN KD KNGKLRS VL+R I P ELLDMSST+LAND+LRK+RA+V+EKMTRDAMPYTQQ ASTDRFKCGKC++RKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF
Sbjct:    1 MADVKKKLSATKTIDKKTRPPTTPKILSSAXXXXXXPLDVSPSTVSVPPPPDH---DSQYDVKHPTGDKMRDKVRSLLADALFKKDEKHVSSKDDAQLVANAIEHAMFIKFDGNGQSYKQKYRSISFNLKDPKNGKLRSLVLTRQINPQELLDMSSTELANDELRKRRAEVQEKMTRDAMPYTQQAASTDRFKCGKCKQRKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 228          
BLAST of Gvermi5185.t1 vs. uniprot
Match: R7QEZ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEZ4_CHOCR)

HSP 1 Score: 266 bits (680), Expect = 3.460e-87
Identity = 138/230 (60.00%), Postives = 178/230 (77.39%), Query Frame = 0
Query:    4 LNKKLSATKTIDKKARAS-TTPRKQIPAQGAD--------KPPSSSPKSVDHAESSKEYNVKHPTGDKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            L KKLSA+K I+KKAR+   +P     A  AD        +   S+    + +E   EY+V HPT +K+RDK+R+LL+DAL+ KDE+FVK +++AQ+VA+AIE A++ K DG+G+ YK KYR++SFN KD KN KLR A+L RH+ PSELL+MS+ DLAND+LRK R +VR KMTRDAMP+++QEASTD FKCGKC++RKCTYYQMQTRSADEPLTTFV+CV+C NRWRF
Sbjct:    5 LEKKLSASKVINKKARSGDVSPHVSRDALKADAAAAATGERKDDSTQNETNSSEFDAEYDVPHPTNEKIRDKIRSLLTDALFKKDEDFVKDRNDAQIVANAIEAALYDKMDGNGAPYKNKYRNISFNIKDPKNAKLRMALLYRHLPPSELLNMSNHDLANDELRKNREEVRAKMTRDAMPFSKQEASTDMFKCGKCKQRKCTYYQMQTRSADEPLTTFVSCVHCGNRWRF 234          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A7S2ZFF0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFF0_9RHOD)

HSP 1 Score: 162 bits (411), Expect = 7.440e-47
Identity = 80/165 (48.48%), Postives = 117/165 (70.91%), Query Frame = 0
Query:   61 DKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPY--TQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 223
            D +R +V+ +L++ALY + E  V+S ++A  +A  +E  M+  F G+  AYK K+R+L+FN KD KN +LRS V+S  + P  L+ MSS +LAN + R+   ++ +   R+A  Y  ++  A+TD FKCGKC++RKCTYYQ+QTRSADEPLT+FVTC+ CNNRW+
Sbjct:   39 DPVRKRVKEMLANALYKESEGHVESLEKAMEIAVKLELEMYTVFHGTNQAYKDKFRTLNFNLKDEKNERLRSLVVSGAVGPERLITMSSQELANPERRESNTKIEKNNMREAQLYNPSKHAATTDLFKCGKCKQRKCTYYQLQTRSADEPLTSFVTCMVCNNRWK 203          
BLAST of Gvermi5185.t1 vs. uniprot
Match: C1NA42_MICPC (Transcription elongation factor n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1NA42_MICPC)

HSP 1 Score: 166 bits (420), Expect = 9.490e-47
Identity = 85/167 (50.90%), Postives = 115/167 (68.86%), Query Frame = 0
Query:   60 GDKMRDKVRNLLSDALY--IKDENFVKSKDEAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            GD +RD+ R LL++A+   I   +   S ++    A AIE AM  ++  +G  YK K+R LSFN KD KN  LR +V    I P+ LLD+S  +L +D+ R   A++RE  T +A+   ++EASTD FKCGKC++RKCTYYQ+QTRSADEP+TTFVTCVNC+NRW+F
Sbjct:  158 GDPLRDRTRELLAEAIAQAIGAPDVYASVEDVAQTAIAIENAMHAQWSDTGKEYKAKFRQLSFNLKDPKNPDLRRSVADGLISPAVLLDLSPEELGSDERRNSNAKIREHATNEAVRGQKKEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVNCDNRWKF 324          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A1X6P3X2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3X2_PORUM)

HSP 1 Score: 157 bits (397), Expect = 2.770e-45
Identity = 82/162 (50.62%), Postives = 107/162 (66.05%), Query Frame = 0
Query:   63 MRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDGS-GSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 223
            MRDKVR+L++ ALY   +  V     A+  A A+E AMF       G AYK KYR LSFN KD KN  LRS VL   + P+ L+ MS+ +LAN++ +  R +V E M R+A P     A+TD F+CGKC++R+ TY+QMQTRSADEP+TTFV C+ C NRW+
Sbjct:    1 MRDKVRSLIASALYKDTDGLVADLAGAEPAAAAVEAAMFTATGTDVGGAYKSKYRQLSFNLKDAKNVALRSRVLRGDLTPAVLVGMSNEELANEETKAYRKEVAETMLREAQPGGNARATTDMFRCGKCKQRRTTYHQMQTRSADEPMTTFVCCLECGNRWK 162          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A7J7PD88_9CHLO (Transcription elongation factor n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PD88_9CHLO)

HSP 1 Score: 156 bits (394), Expect = 1.100e-43
Identity = 79/167 (47.31%), Postives = 113/167 (67.66%), Query Frame = 0
Query:   59 TGDKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDG-SGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            TGD  RD++R LL D L +  ++    +D  +V A  +E A++ +F+  +G  Y  K RSLSFN KD  N  LR+ VL   + P EL+DM   +LA+D  R++  ++R++   +A+    Q+ASTD FKCG+C+++KCTYYQMQTRSADEP+TTFVTCVNC  +W+F
Sbjct:   87 TGDGKRDRIRQLLCDGLCLVPDDQRSGQDPGEVAAE-VEAAIYARFNQHTGPEYGAKVRSLSFNLKDPANPDLRARVLQGQVDPQELVDMPPEELASDSKRRENHKIRQEAAAEAVRGQTQQASTDMFKCGRCKQKKCTYYQMQTRSADEPMTTFVTCVNCGQKWKF 252          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A7S0RUH1_9CHLO (Transcription elongation factor n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUH1_9CHLO)

HSP 1 Score: 157 bits (396), Expect = 1.830e-43
Identity = 87/173 (50.29%), Postives = 108/173 (62.43%), Query Frame = 0
Query:   55 VKHPTGDKMRDKVRNLLSDALYIKDENFVKSKD---EAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
             K  TGD  RDK+   L +AL +      +  D   E  +V  +IE AMF KF G    YK KYRS+SFN KD +N  LR  VLS  I P  LL +SS +L +D  R+    +R+ M R+       ++STD+FKCGKC +RK  YYQMQTRSADEP+TTFVTCVNCNNRW+F
Sbjct:  125 AKPNTGDPQRDKLAVSLCEALAVVLGEVGEDADGLAEPSLVGISIEAAMFRKFGGMTKEYKAKYRSISFNLKDSRNPDLRRKVLSGDISPYTLLTLSSEELGSDSKREANEAIRQHMMRECERGQTTQSSTDQFKCGKCGQRKTIYYQMQTRSADEPMTTFVTCVNCNNRWKF 297          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A834Z4H7_9MAGN (Transcription elongation factor n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Z4H7_9MAGN)

HSP 1 Score: 158 bits (399), Expect = 5.070e-43
Identity = 85/170 (50.00%), Postives = 110/170 (64.71%), Query Frame = 0
Query:   61 DKMRDKVRNLLSDALY-IKDENFVKSKDEAQV-----VAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            D MRDKVR LLS+A   +  E     +DEA       VA  +E AMF K+  S  A K KYRS+ FN KD  N  LR  VL  H+ P  LL M+  ++A+D  +++  Q++EK   D     Q +A+TD+F+CG+C +RKCTYYQMQTRSADEP+TT+VTCVNCNN W+F
Sbjct:  215 DAMRDKVRELLSEAFSKVSSEADEDIRDEANACDPIRVAVTVESAMFEKWGRSNGAQKFKYRSIMFNIKDPNNPDLRRKVLLGHVKPERLLSMTPDEMASDQRQRENNQIKEKALFDCERGGQAKATTDQFRCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKF 384          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A2P6TNC7_CHLSO (Transcription elongation factor n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNC7_CHLSO)

HSP 1 Score: 153 bits (386), Expect = 1.240e-41
Identity = 80/166 (48.19%), Postives = 109/166 (65.66%), Query Frame = 0
Query:   59 TGDKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            TGD +RDK R  L+ A +      V    +  V   A+E  ++ +  G   AYK K+R L FN KD  N  LR  VLS  I P  L ++   +LA+D  R++ A++REK   DA P + ++A+TD+F+CGKC++RKCTYYQMQTRSADEP+TTFV+C+NCNNRW+F
Sbjct:  166 TGDSIRDKCRQNLAQAFHQAVLEGVAG--DPLVCGVAVENEIYNQNGGVSQAYKAKFRQLHFNLKDAANPDLRRKVLSGEIAPDVLHNLPPEELASDAKREENARIREKKLFDAAPSSAKQATTDQFQCGKCKQRKCTYYQMQTRSADEPMTTFVSCMNCNNRWKF 329          
BLAST of Gvermi5185.t1 vs. uniprot
Match: A0A087SIQ6_AUXPR (Transcription elongation factor A protein 2 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIQ6_AUXPR)

HSP 1 Score: 151 bits (381), Expect = 1.850e-41
Identity = 83/173 (47.98%), Postives = 111/173 (64.16%), Query Frame = 0
Query:   59 TGDKMRDKVRNLLSDALYIKDENF--VKSKDEAQ-----VVAHAIEQAMFLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSSTDLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            TGDK+RD  R   + AL +  E      S DE        +A A+E+ +  +  G    YK K+RSLSFN KD KN  LR  VL+  I P  L+ ++   LA+D  R++ A++REK   D+ P   ++ +TD+F+CGKCR+RK TYYQMQTRSADEP+TTFVTC+NCNNRW+F
Sbjct:  104 TGDKVRDLCRTTFAAALCLAVEELRAAPSPDEEACATPGALAVAMEEELRRQHGGVTEGYKAKFRSLSFNLKDRKNPDLRRKVLTGRIAPDLLVTLAPEALASDAQREENARIREKKLFDSAPSAAKQPTTDQFQCGKCRQRKTTYYQMQTRSADEPMTTFVTCLNCNNRWKF 276          
The following BLAST results are available for this feature:
BLAST of Gvermi5185.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V5_9FLOR1.950e-10672.29Transcription elongation factor TFIIS n=1 Tax=Grac... [more]
R7QEZ4_CHOCR3.460e-8760.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZFF0_9RHOD7.440e-4748.48Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
C1NA42_MICPC9.490e-4750.90Transcription elongation factor n=1 Tax=Micromonas... [more]
A0A1X6P3X2_PORUM2.770e-4550.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7J7PD88_9CHLO1.100e-4347.31Transcription elongation factor n=1 Tax=Scenedesmu... [more]
A0A7S0RUH1_9CHLO1.830e-4350.29Transcription elongation factor n=1 Tax=Pyramimona... [more]
A0A834Z4H7_9MAGN5.070e-4350.00Transcription elongation factor n=1 Tax=Tetracentr... [more]
A0A2P6TNC7_CHLSO1.240e-4148.19Transcription elongation factor n=1 Tax=Chlorella ... [more]
A0A087SIQ6_AUXPR1.850e-4147.98Transcription elongation factor A protein 2 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 61..163
e-value: 3.8E-23
score: 92.9
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 59..171
e-value: 7.1E-28
score: 97.3
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 63..180
score: 26.196566
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 185..224
e-value: 3.7E-20
score: 82.9
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 185..223
e-value: 2.2E-18
score: 65.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 187..222
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 183..223
score: 14.028257
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 42..153
e-value: 3.3E-25
score: 90.5
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 43..156
NoneNo IPR availableGENE3D2.20.25.10coord: 154..224
e-value: 1.7E-25
score: 90.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..61
NoneNo IPR availablePANTHERPTHR11477:SF36TRANSCRIPTION ELONGATION FACTOR TFIIScoord: 26..224
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 26..224
NoneNo IPR availableCDDcd13749Zn-ribbon_TFIIScoord: 178..224
e-value: 5.04305E-29
score: 101.143
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 164..223
IPR035100Transcription elongation factor, IIS-typePIRSFPIRSF006704TFIIScoord: 2..224
e-value: 4.4E-62
score: 207.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:548522..549196 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5185.t1Gvermi5185.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 548522..549196 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5185.t1 ID=Gvermi5185.t1|Name=Gvermi5185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=225bp
MADLNKKLSATKTIDKKARASTTPRKQIPAQGADKPPSSSPKSVDHAESS
KEYNVKHPTGDKMRDKVRNLLSDALYIKDENFVKSKDEAQVVAHAIEQAM
FLKFDGSGSAYKQKYRSLSFNFKDLKNGKLRSAVLSRHILPSELLDMSST
DLANDDLRKKRAQVREKMTRDAMPYTQQEASTDRFKCGKCRERKCTYYQM
QTRSADEPLTTFVTCVNCNNRWRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR001222Znf_TFIIS
IPR036575TFIIS_cen_dom_sf
IPR035100TF_IIS-typ