Gvermi4403.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4403.t1
Unique NameGvermi4403.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length446
Homology
BLAST of Gvermi4403.t1 vs. uniprot
Match: A0A2V3J1X8_9FLOR (PAPA-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1X8_9FLOR)

HSP 1 Score: 369 bits (948), Expect = 8.290e-122
Identity = 283/438 (64.61%), Postives = 305/438 (69.63%), Query Frame = 0
Query:    5 DSFSSDEVGKLPAVPRVRRSSGAKPPXXXXSRSAGKSNKRDSQVAEKRPIRQSARRRVARKNFREDSANSE-DDGNESFVAVRRTSRHAQKARKLIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNXXXXXXXDNDXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDNEGSEINKGQTDILAELEAEVGKDDSEDFKSESSEEPKLKKPRRLTSRQRALQGETVKLEYSKLGSPKTKKKDVQEEWDHDEEMEMKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKLTLATEARAAQVEVRLTQNEMRDGCMRYVSNKEGSTLSIPKDAVVPPYLKKSLKAVYPPLCKRDPKTGKRVFPCATTS 441
            +SFSSDEV KLPAVPRVRRSSGAKPP    SRSA KS+KR+S +AEKRPIRQSARRR+++++FREDS NSE +D +ES V VRRTSR  QK RK+I+XXXXXXXX                                                      G  XXXXXXXXXXXXXXXXXXXXXXXXX                            XXXXXXXXXXXXX       + EG EI KGQ DILA+LE E   +DSEDFKSESSEE K  K RRLTSRQRALQGE VKLEYSKL SPKTKKK+VQEEWDHDEEME+KRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKK TLATEARAAQVEVRL QNEMRDGCMRYVSNK G TLSIPKDA  P YL +SLKAVYPP C+RDPKTGKR+   +T S
Sbjct:    2 ESFSSDEVNKLPAVPRVRRSSGAKPPAPRSSRSASKSSKRESSIAEKRPIRQSARRRISKRSFREDSVNSEYEDNDESHVVVRRTSRRIQKTRKVIEXXXXXXXXIVHTEDKDD--------------------------------SETKEENESSPGIGDEXXXXXXXXXXXXXXXXXXXXXXXXXKSASIYSRRAKKRRKTIRESSSDGRGNSXXXXXXXXXXXXXDLGNESAEAEGVEIIKGQNDILAQLEEEGNDNDSEDFKSESSEEVKPMKSRRLTSRQRALQGENVKLEYSKLESPKTKKKEVQEEWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLAQNEMRDGCMRYVSNKNGITLSIPKDASTPSYLGRSLKAVYPPKCERDPKTGKRLLSLSTES 407          
BLAST of Gvermi4403.t1 vs. uniprot
Match: R7QG84_CHOCR (PAPA-1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG84_CHOCR)

HSP 1 Score: 207 bits (527), Expect = 4.050e-59
Identity = 120/195 (61.54%), Postives = 147/195 (75.38%), Query Frame = 0
Query:  244 EINKGQTDILAELEAEVGKDDSED--FKSESSEEPKLKKPRRLTSRQRALQGETVKLEYSKLGSPKTKKKDVQEE-WDHDEEMEMKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKLTLATEARAAQVEVRLTQNEMRDGCMRYVSNKEGSTLSIPKDAVVPPYLKKSLKAVYPPLCKRDPKTGKRVF 435
            ++N G+  ILAELE     DD  D     +S  E   KK  RLT RQRA+QGE VKLEY+KL SPK KK    EE W +DEE E+K+QQ+ARLRQM+ EKRN+EKRAAMVDKVLRGVTSKRKKLT+A+E R A+V  RL++NEMR GC+R+VSN  G++LSIP++   P YL++SLKAVYP  C RDP+TGKR+F
Sbjct:  185 KVNAGRDKILAELEEAEAMDDGSDPLDSDDSVVEKGTKKTERLTRRQRAMQGENVKLEYTKLESPKAKKAAPPEEAWSNDEEAELKKQQRARLRQMIHEKRNKEKRAAMVDKVLRGVTSKRKKLTMASEERVAKVGTRLSKNEMRKGCIRFVSNPTGTSLSIPEEDDAPAYLQESLKAVYPKPCLRDPRTGKRIF 379          
BLAST of Gvermi4403.t1 vs. uniprot
Match: A0A1X6PFD6_PORUM (PAPA-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFD6_PORUM)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-14
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 0
Query:  321 EEMEMKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKLTLATEARAAQVEVRLTQNEMRDGCMRYVSNKEGSTLSIPKDAVVPPYLKKSLKAVYPPL-CKRDPKTGKRVF 435
            EE  ++++Q ARLR++  EK+ +EKR A +++VLRGVT+KRKK   A+EA  A     L  N  R G +R++SN+ G +LS      +PP +   L    PP  C  DPKTGKRVF
Sbjct:  257 EEAVLRKEQVARLRRITHEKKRQEKRVATIERVLRGVTTKRKKAVAASEAVVADARDSLAVNRPRPGAVRHISNRGGESLSFVAGDALPPLVAVGLPRRAPPRPCTWDPKTGKRVF 372          
BLAST of Gvermi4403.t1 vs. uniprot
Match: A0A7S0T9H4_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T9H4_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 9.810e-7
Identity = 62/179 (34.64%), Postives = 90/179 (50.28%), Query Frame = 0
Query:  284 LTSRQRALQG----ETVKLE--YSKLGSPKTKKKDVQEEWDHD--EEMEMKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKLTLATEARAAQVEVRLTQNEMRDGCMRYVSNKEGSTLSIPKD---AVVPPYLKKSLK------AVYPPLCKRDPKTGKRVFPCATTSAAAI 445
            +T+RQRA+ G    E V L   Y+  G    K+   Q E D +  E  E KR Q +RLR + SEK+ +E++ A ++KVLRG + ++++     E R  + E     + +     R  + K+GS L +  D       PYL   LK         PP+C RDPKTGKR+ P  TT+   I
Sbjct:   66 MTARQRAMAGHEAPELVDLSHFYATQGIGAGKQ---QRELDPERKERRERKRLQASRLRAINSEKKRQERQEATIEKVLRGASRRQRQ---GEETRKLRQEQASNVDTIAPRHARLWAQKDGSQLVVFPDYSEIQTDPYLSHFLKYETAPNVPRPPVCARDPKTGKRILPVTTTAPPPI 238          
The following BLAST results are available for this feature:
BLAST of Gvermi4403.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1X8_9FLOR8.290e-12264.61PAPA-1 domain-containing protein n=1 Tax=Gracilari... [more]
R7QG84_CHOCR4.050e-5961.54PAPA-1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1X6PFD6_PORUM1.180e-1444.83PAPA-1 domain-containing protein n=1 Tax=Porphyra ... [more]
A0A7S0T9H4_9RHOD9.810e-734.64Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..157
NoneNo IPR availableCOILSCoilCoilcoord: 323..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..313
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..118
IPR006880INO80 complex subunit B-like conserved regionSMARTSM01406PAPA_1_2coord: 322..406
e-value: 1.4E-6
score: 37.9
IPR006880INO80 complex subunit B-like conserved regionPFAMPF04795PAPA-1coord: 322..405
e-value: 4.5E-12
score: 46.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1546129..1547466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4403.t1Gvermi4403.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1546129..1547466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4403.t1 ID=Gvermi4403.t1|Name=Gvermi4403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=446bp
MSPPDSFSSDEVGKLPAVPRVRRSSGAKPPVPRPSRSAGKSNKRDSQVAE
KRPIRQSARRRVARKNFREDSANSEDDGNESFVAVRRTSRHAQKARKLID
DDDDYEEDDDDDEAVPDTESKDDFYVKDENESSADMMEEDEEDEEDEEDM
NEEKDDDDDNDDGNEDDNGDEDGDDEGDGDLDMEDDDDVSKGMSVSRSKK
RRKTIRESSSDSRDANQDDDNGNRDGNDESNDFTNDSGDNEGSEINKGQT
DILAELEAEVGKDDSEDFKSESSEEPKLKKPRRLTSRQRALQGETVKLEY
SKLGSPKTKKKDVQEEWDHDEEMEMKRQQKARLRQMVSEKRNREKRAAMV
DKVLRGVTSKRKKLTLATEARAAQVEVRLTQNEMRDGCMRYVSNKEGSTL
SIPKDAVVPPYLKKSLKAVYPPLCKRDPKTGKRVFPCATTSAAAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006880INO80B_C