Gvermi4237.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4237.t2
Unique NameGvermi4237.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length104
Homology
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BLAST of Gvermi4237.t2 vs. uniprot
Match: A0A2V3J199_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J199_9FLOR)

HSP 1 Score: 150 bits (379), Expect = 7.900e-41
Identity = 71/101 (70.30%), Postives = 87/101 (86.14%), Query Frame = 0 
Query:    1 MSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEKDASSIRKIVRLCGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEAGVPLDYDEYLVG 101
            M  FRSD+FGQSPRSV   A    KLLDGLR+RV+S +KDA+SIRK+VRLCGARLA+TRVD+VI+D+K+K+E  CP V+KKWLADSIE+GVPLDY+ YL+G
Sbjct:  452 MDDFRSDRFGQSPRSVNSAAEGPAKLLDGLRVRVISNDKDAASIRKVVRLCGARLAETRVDVVINDSKKKVEG-CPNVQKKWLADSIESGVPLDYEPYLIG 551
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BLAST of Gvermi4237.t2 vs. uniprot
Match: R7QDD6_CHOCR (BRCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD6_CHOCR)

HSP 1 Score: 114 bits (284), Expect = 1.730e-29
Identity = 55/100 (55.00%), Postives = 80/100 (80.00%), Query Frame = 0 
Query:    1 MSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEKDASSIRKIVRLCGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEAGVPLDYDEYLV 100
            M+ FRSD+FGQSPRSVE  A +  ++L+G RI+++S++KDA+SIRK+V+LCG R+A+TR+D+VI+D    +   C  VEKKWLADS+EAG  +D++ Y+V
Sbjct:  115 MNVFRSDQFGQSPRSVEAGATT-VRILEGQRIKILSDKKDAASIRKLVKLCGGRIAETRMDVVINDGAHVLGG-CANVEKKWLADSVEAGEVMDFEGYIV 212
The following BLAST results are available for this feature:
BLAST of Gvermi4237.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J199_9FLOR7.900e-4170.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDD6_CHOCR1.730e-2955.00BRCT domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 20..99
e-value: 1.5E-7
score: 33.3
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 25..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 22..100
score: 10.36286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:867872..868183 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4237.t2Gvermi4237.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 867872..868183 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4237.t2 ID=Gvermi4237.t2|Name=Gvermi4237.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=104bp
MSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEKDASSIRKIVRL
CGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEAGVPLDYDEYLV
GRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom