Gvermi4237.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4237.t1
Unique NameGvermi4237.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length565
Homology
BLAST of Gvermi4237.t1 vs. uniprot
Match: A0A2V3J199_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J199_9FLOR)

HSP 1 Score: 357 bits (915), Expect = 3.420e-113
Identity = 262/574 (45.64%), Postives = 332/574 (57.84%), Query Frame = 0
Query:    1 MTALNEALSDADTQEPVKEPVKTELDSRRIPESDDDDIVMIRVKGTENESEKKPAEQKGAAKSKRVVEPI-TDSDHSDDEQQSEAAVDFGEEXXXDEVAGAPAKSNAQ--KPKQSEDPDFVEIENDDVGRDKSSGAGKDYNKEVQNKKKETGT-SAALXXXXXXXXXXXXXXXXXXXSKVDVKVKSKTTKAKQQTA-----VKKTSLAIKANEKASNKSTSPPSESISSVPKGEKLSKKTAKGKALVRKAVKPAPKTGKASSIKEKPLKAKKVIDKEEVTKEKKSPVRKNGSSTTAATTYSKKAKKVAGKSSATPAKEKTKSEITAALKKKKAGTKEVKETRKKKGREYSE---SDSNGQVDYESDNEGSVSDCDSMTDELAKTPSSKLPILGNLACSSRDQNAEALLDHAVQQLGRYNIVSYNAESNIKLAAYIIGSGTKRGWGLLQALVSGVPLISDNWLSGSISEGKWLPMSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEKDASSIRKIVRLCGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEAGVPLDYDEYLVG 562
            MTALNE+LSDADTQEPVK    +EL+SR +P+SDDD + M  VK             K + K+   +EPI +DSDHSDDE+ ++  VDFGEE   D+ A    K N    +PKQ ED   ++ + D+ G   SS    D ++  +++KK  G+ S   XXXXXXXXXX          K+D K K K  K+KQ  +                                           T+K K L+RKA KP+ K G ++  K K LK KK IDK++ TKEKKSP  K G                                                                D + Q++ +S+N+  VS+ DS  +E  +TPS K+ +LGNLACSSRDQN +ALL+HAVQQL RYNIVSYNAE++  L AYIIG  T+RGWG+LQALVSGV L+SDNWLS SISEGKW+PM  FRSD+FGQSPRSV   A    KLLDGLR+RV+S +KDA+SIRK+VRLCGARLA+TRVD+VI+D+K+K+E  CP V+KKWLADSIE+GVPLDY+ YL+G
Sbjct:    1 MTALNESLSDADTQEPVK----SELNSRHVPDSDDDSVDMAPVK-------------KSSEKAAAAIEPIHSDSDHSDDERTNDPPVDFGEEEEEDDFAPQNEKKNKSPVRPKQ-EDDSKLKGDADEKGNPCSS----DTHRTKRHQKKSDGSRSPXXXXXXXXXXXXLSPSKAIKKVKLDSKTKPKPVKSKQPPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPANTSKTKPLLRKASKPSQKAGTSAQQKSKSLKVKKAIDKDDATKEKKSPTSKKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDESAQMEIDSENDEPVSENDSCDEETVRTPSFKMQLLGNLACSSRDQNTQALLEHAVQQLRRYNIVSYNAETSSPLIAYIIGKETRRGWGVLQALVSGVALVSDNWLSSSISEGKWVPMDDFRSDRFGQSPRSVNSAAEGPAKLLDGLRVRVISNDKDAASIRKVVRLCGARLAETRVDVVINDSKKKVEG-CPNVQKKWLADSIESGVPLDYEPYLIG 551          
BLAST of Gvermi4237.t1 vs. uniprot
Match: R7QDD6_CHOCR (BRCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD6_CHOCR)

HSP 1 Score: 242 bits (618), Expect = 1.700e-73
Identity = 123/214 (57.48%), Postives = 163/214 (76.17%), Query Frame = 0
Query:  348 QVDYESDNEGSVSDCDSMTDELAKTPSSKLPILGNLACSSRDQNAEALLDHAVQQLGRYNIVSYNAESNIKLAAYIIGSGTKRGWGLLQALVSGVPLISDNWLSGSISEGKWLPMSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEKDASSIRKIVRLCGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEAGVPLDYDEYLV 561
            QV    D++   SD D    E+A+TP+ K  ILG LACSSRD NA ALL+HAVQQLG+Y I+SY  ES  ++ AYI+G  TKRGWGLLQA+  GVPL+S++WLS SISEGKW  M+ FRSD+FGQSPRSVE  A +  ++L+G RI+++S++KDA+SIRK+V+LCG R+A+TR+D+VI+D    +   C  VEKKWLADS+EAG  +D++ Y+V
Sbjct:    2 QVPDSEDDQECSSDSDEEMGEVARTPA-KQAILGRLACSSRDGNASALLEHAVQQLGKYEIISYGPESEGEIKAYIVGKETKRGWGLLQAIACGVPLVSEDWLSSSISEGKWKAMNVFRSDQFGQSPRSVEAGATT-VRILEGQRIKILSDKKDAASIRKLVKLCGGRIAETRMDVVINDGAHVLGG-CANVEKKWLADSVEAGEVMDFEGYIV 212          
The following BLAST results are available for this feature:
BLAST of Gvermi4237.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J199_9FLOR3.420e-11345.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDD6_CHOCR1.700e-7357.48BRCT domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 382..474
e-value: 7.5E-6
score: 28.3
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 482..560
e-value: 5.1E-6
score: 28.4
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 427..562
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..359
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..224
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 483..561
score: 10.36286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:867872..869566 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4237.t1Gvermi4237.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 867872..869566 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4237.t1 ID=Gvermi4237.t1|Name=Gvermi4237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=565bp
MTALNEALSDADTQEPVKEPVKTELDSRRIPESDDDDIVMIRVKGTENES
EKKPAEQKGAAKSKRVVEPITDSDHSDDEQQSEAAVDFGEEEEEDEVAGA
PAKSNAQKPKQSEDPDFVEIENDDVGRDKSSGAGKDYNKEVQNKKKETGT
SAALKKTKKTKSKELSPSKTIKKSKVDVKVKSKTTKAKQQTAVKKTSLAI
KANEKASNKSTSPPSESISSVPKGEKLSKKTAKGKALVRKAVKPAPKTGK
ASSIKEKPLKAKKVIDKEEVTKEKKSPVRKNGSSTTAATTYSKKAKKVAG
KSSATPAKEKTKSEITAALKKKKAGTKEVKETRKKKGREYSESDSNGQVD
YESDNEGSVSDCDSMTDELAKTPSSKLPILGNLACSSRDQNAEALLDHAV
QQLGRYNIVSYNAESNIKLAAYIIGSGTKRGWGLLQALVSGVPLISDNWL
SGSISEGKWLPMSAFRSDKFGQSPRSVEGPANSGGKLLDGLRIRVVSEEK
DASSIRKIVRLCGARLAQTRVDLVIHDTKRKIENTCPQVEKKWLADSIEA
GVPLDYDEYLVGRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom