Gvermi4218.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4218.t1
Unique NameGvermi4218.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length744
Homology
BLAST of Gvermi4218.t1 vs. uniprot
Match: A0A2V3J188_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J188_9FLOR)

HSP 1 Score: 348 bits (892), Expect = 4.930e-110
Identity = 197/337 (58.46%), Postives = 247/337 (73.29%), Query Frame = 0
Query:  414 YLSSSEPDRRHRRSASERSFDSQMQRYPRARSRDTDSA----KYDGRRRRTPSIEPSRSEGSRHSPALP-FKGARIGKRIRRRPQRWEGEGMDG-RSQRMGLARVKDETQIDMPTGESTMSMDSSASEPEIPVIDSPYADLRKAVASCDSQPSRRDMVEWFHAWQLRAVSKQAAQQKALHVFLKRKLRKRTTRSPEHDRMEQDALRNARFAI-RIDDKEGGIRTMKDLPPEFDLINEDFIVPNEIRLPLEAYMPRRMVANGETITREELLSIVPQPPQEPDNIRDERNQDPKGSWMILPTVLASAQWNSRKSNGRRRMHQNKQVQQTAT-VEDSTRS 742
            Y  S E DR+H+R  S+RS DS+M RY R R +DT S     +   RRRRTPS + S SE    S ALP F  +RIGKR+RRRPQRW+G+ +D  R+ R+G++RVKDE  +    GESTMS++SS+S+   P +DSP+ADL+KA+A+ D QPSRR+MV+WFH+WQLRAVSKQAAQQKALHVFLKR+LRKRTTRSPEHDRMEQ+ALRNAR A+ + ++K+ G  T +DLP +FD +NE+FIVPN+IRLPLEAYMPRRM ANG ++   ELL +VP  PQ P ++ +  NQ     W+ LPTV  SAQWNSRKSN RRR  Q+     T   +ED  RS
Sbjct:   37 YPPSPEVDRKHKRPLSDRSADSKMHRYHRGRGKDTHSTTSSRRDSSRRRRTPSNDRSHSEDGSRSSALPRFTASRIGKRVRRRPQRWDGDALDAVRAHRVGMSRVKDEALVS--DGESTMSLNSSSSDMLAPYVDSPFADLKKAIAASDLQPSRREMVDWFHSWQLRAVSKQAAQQKALHVFLKRRLRKRTTRSPEHDRMEQEALRNARLAVDQQNEKQNGRGTTEDLPADFDFVNENFIVPNKIRLPLEAYMPRRMAANGTSMGCGELLEMVPTAPQLPSDMHNGHNQK-DDKWLALPTVAVSAQWNSRKSNSRRRAVQSSNEPVTHNKIEDPVRS 370          
BLAST of Gvermi4218.t1 vs. uniprot
Match: R7Q9H5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9H5_CHOCR)

HSP 1 Score: 247 bits (630), Expect = 2.250e-67
Identity = 157/378 (41.53%), Postives = 208/378 (55.03%), Query Frame = 0
Query:    1 MSSPRTRSWLFHNQPPDSAHVIQSLLSAPLLLGYVFGS-HNPQQ-HDFPDIGDLNTVFTTDNHTLLGFHFGFQGIQPVIPMLFQVANDPILADPTVIVRRTAMLRYPAA--NCFFQIEMNWCKSGVLAVCTNVCPIHPSGSRPDGLTPFFDNAEFRVFKRCSAQRLAATAAIMADY-SPSASHAADPHPRYAH-----FFDPQDDCYALTICEPDDPVYHT----HLRPVSKRRKPSHPHTFTIQQHMP-------------PHEQSTCAHPSNS---------LSALPRHCDQGERASVAEPHTIALWTAFQNVVAQSRRLGIMHSMLEKRVGGRHGRRVQLFGREACYTFLSTSGINVRGRIHRLCAQIGIHYSGP 342
            +++PR R+WLF    P  AHV+Q+LLS+P+L+GYVF   H P + + FPDIGDL+TVF  D   LLGF FGFQG  PV+P+LFQV  DP+L +P VIVR+TA  R P    + +  IE NW +SG L V T++     + + P G   F   +E RVF R SA +L+A    MAD  SP  SHA+ PH    H     F DP DD + L + E DD  YH      L P SK +       F +                   H +ST  H SN          L     HC +G+ +SVAE  T+ LW  +Q  V + RR G + +ML  +VGGR  + V ++GR+A Y FLSTSG+NV GRI +L +Q+ I +  P
Sbjct:   38 LNTPRVRAWLFERTAPLKAHVVQALLSSPILVGYVFSDLHIPSRSYSFPDIGDLHTVFCRDGDALLGFSFGFQGRNPVMPLLFQVIRDPMLGNPNVIVRKTAKQRAPRPYQDYYLCIEFNWLESGALGVVTSITSSDSNENTPSGRCSFVLQSEHRVFNRRSAAKLSA----MADQLSPYISHASLPHLSPFHTLPPDFADPPDDYHMLIVKEYDDSDYHALDPLSLNPASKNQVFEVESDFAVPSTAANSXXXXXXXXTNISHTEST--HNSNPTELQGHTPFLGGALLHCHKGDGSSVAEAETVKLWRHYQGAVDKCRRTGNLMTMLGTKVGGRFAKEVPVYGRDARYRFLSTSGVNVHGRIQQLFSQLDIQFGSP 409          
BLAST of Gvermi4218.t1 vs. uniprot
Match: R7QA99_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA99_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 2.880e-42
Identity = 126/332 (37.95%), Postives = 186/332 (56.02%), Query Frame = 0
Query:  420 PDRRHRR-SASERSFD----SQMQRYPRARSRDTDSAK----YDGRRRRTPSIEPSRSEGS-------RHSPALP-FKGARIGKRIRRRPQRWEG--EGMDGRSQRMGLARVKDETQIDMPT----GESTMSMDSSASEPEIPVIDSPYADLRKAVASCDSQPSRRDMVEWFHAWQLRAVSKQAAQQKALHVFLKRKLRKRTTRSPEHDRMEQDALRNARFA-IRIDDKEGGIRTMK---------DLPPEFDLINEDFIVPNEIRLPLEAYMPRRMVANGETITREELLSIVPQPPQEPDNIRDERNQDPKGSWMILPTVLASAQWNSRKS 718
            PDR+ R+ SASE + +     +M+RY +AR RD +  +       +  +      SRS  S         SPA    + +R+GKR+RRRPQRWEG  E  + R+ R   A       +D+ +    GE T S  S   EPE P ID P A++ +A+A C ++   R +V+ FH WQL+AVSKQAAQQKALHVFLKRK RKR  R+PE  R+E +ALRNAR A +R   ++                +   E +   +   VP++IRLPLEAY+PRR+ A+   IT E++  ++P+P + P+  ++ER+++    W+ + TV   +  N +K+
Sbjct:   46 PDRKRRKLSASEHTRELGKEDRMERYAKARIRDANKNRTFEEVSSKPHKRGGRGSSRSRASVQVXXXXXXSPATSQLQPSRVGKRLRRRPQRWEGANERREQRTARSTAAASSRSRDMDLASRESDGEQTASDSSMHFEPEPPSIDDPIAEMARALARCSAEHGPRAVVDSFHTWQLQAVSKQAAQQKALHVFLKRKQRKRAARTPELARLESEALRNARTATVRAKAEKAXXXXXXXXXXXVKKPENASESEAEEDRCYVPSKIRLPLEAYLPRRVRADKIPITPEKVFELLPRPGRLPEGTKEERDEN---GWVHVETVKTPSLLNKQKA 374          
The following BLAST results are available for this feature:
BLAST of Gvermi4218.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J188_9FLOR4.930e-11058.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q9H5_CHOCR2.250e-6741.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QA99_CHOCR2.880e-4237.95Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 725..743
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 681..700
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 712..743
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..432
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..466
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..743
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:771022..776764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4218.t1Gvermi4218.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 771022..776764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4218.t1 ID=Gvermi4218.t1|Name=Gvermi4218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=744bp
MSSPRTRSWLFHNQPPDSAHVIQSLLSAPLLLGYVFGSHNPQQHDFPDIG
DLNTVFTTDNHTLLGFHFGFQGIQPVIPMLFQVANDPILADPTVIVRRTA
MLRYPAANCFFQIEMNWCKSGVLAVCTNVCPIHPSGSRPDGLTPFFDNAE
FRVFKRCSAQRLAATAAIMADYSPSASHAADPHPRYAHFFDPQDDCYALT
ICEPDDPVYHTHLRPVSKRRKPSHPHTFTIQQHMPPHEQSTCAHPSNSLS
ALPRHCDQGERASVAEPHTIALWTAFQNVVAQSRRLGIMHSMLEKRVGGR
HGRRVQLFGREACYTFLSTSGINVRGRIHRLCAQIGIHYSGPCTDRFLLQ
LSRAERDAPPPECARARAHGATQHIDLTEPLEDKVPVHDNAQRAHHAHHG
EGSDRERSHPTYHYLSSSEPDRRHRRSASERSFDSQMQRYPRARSRDTDS
AKYDGRRRRTPSIEPSRSEGSRHSPALPFKGARIGKRIRRRPQRWEGEGM
DGRSQRMGLARVKDETQIDMPTGESTMSMDSSASEPEIPVIDSPYADLRK
AVASCDSQPSRRDMVEWFHAWQLRAVSKQAAQQKALHVFLKRKLRKRTTR
SPEHDRMEQDALRNARFAIRIDDKEGGIRTMKDLPPEFDLINEDFIVPNE
IRLPLEAYMPRRMVANGETITREELLSIVPQPPQEPDNIRDERNQDPKGS
WMILPTVLASAQWNSRKSNGRRRMHQNKQVQQTATVEDSTRSQ*
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