Gvermi3734.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi3734.t1
Unique NameGvermi3734.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length185
Homology
BLAST of Gvermi3734.t1 vs. uniprot
Match: A0A2V3IX19_9FLOR (SRP_SPB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX19_9FLOR)

HSP 1 Score: 223 bits (569), Expect = 9.240e-72
Identity = 116/181 (64.09%), Postives = 142/181 (78.45%), Query Frame = 0
Query:    4 VKSVYEEARGSTEEKRSQKIFEKQLSYLRSKDMMNPQLFHSLLQEIKAAAGLSGIREHLPWVQNNPALGEFKEQERILSAMSPAERKDAFSIKISDIKRIARETDTTADSVEALITQIMQMRRIQKWLSKREQAGLPIPSSPIELERMISGSGGVKKGKGSNKMPNPGIPEKKNRRRRQLW 184
            +KS Y EA+ S EEKRS+K+F+ Q+ YLR K+MM P +F S LQ++K AAGLSG++EHLPWVQNNPALGEFK+QE I++AM+P+E+KDAFSI ISD KRI R  D   ++VEAL+TQI QMRRIQKW+ KRE+ GLPIP S  ELERMI  SGGVK  +  +K PNPG+PEK  R RR  W
Sbjct:    1 MKSAYGEAQTSAEEKRSKKMFQIQMGYLRGKEMMTPNVFLSALQKMKQAAGLSGVKEHLPWVQNNPALGEFKQQESIIAAMTPSEKKDAFSITISDKKRIMRAADAPMEAVEALVTQITQMRRIQKWMWKREKEGLPIPRSADELERMIVASGGVKGAREHHKYPNPGVPEK-GRTRRWAW 180          
BLAST of Gvermi3734.t1 vs. uniprot
Match: R7Q4P9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4P9_CHOCR)

HSP 1 Score: 152 bits (383), Expect = 1.690e-40
Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = 0
Query:    1 MDNVKSVYEEARGSTEEKRSQKIFEKQLSYLRSKDMMNPQLFHSLLQEIKAAAGLSGIREHLPWVQNNPALGEFKEQERILSAMSPAERKDAFSIKISDIKRIARETDTTADSVEALITQIMQMRRIQKWLSKREQAGLPIPSSPIELERMISGSG-GVKKGKGSNKMPNPGI 172
            MDN++S Y++A   +E KR  K+FE Q+  L +   ++   F  L+QE+K A+GL G++EHLPWV+NNPA GEFK+QE +L A +PAER + F I IS +KR+AR+ +T    VE L+ Q+  M  IQKW+ KR+ +G  +P S  E++ M+   G G+ +  G  +  NPGI
Sbjct:  291 MDNMRSAYDKALQGSESKRESKVFEAQMKLLTADKRIDANSFLDLVQEMKMASGLGGVKEHLPWVRNNPATGEFKKQEEMLRAFTPAERANVFGIGISGLKRVARQANTDLHQVEGLVGQVKSMISIQKWMKKRKDSGEKLPESSREMQDMLLRPGSGISRKAGKGQKLNPGI 463          
BLAST of Gvermi3734.t1 vs. uniprot
Match: A0A1X6P497_PORUM (SRP_SPB domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P497_PORUM)

HSP 1 Score: 88.6 bits (218), Expect = 5.330e-19
Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 0
Query:   37 MNPQLFHSLLQEIKAAAGLSGIREHLPWVQNNPALGEFKEQERILSAMSPAERKDAFSIKISDIKRIARETDTTADSVEALITQIMQMRRIQKWLSKREQAGLPIPSSPIELERMISGSG 156
            M+   + S++Q  KAAAGL G R  LPWV ++ A+ E  E E++++AM+PAER+    +  +  +R+A  +   AD V+ L+  +  M  +QKWL KR+ AG  +P +  EL+ M++  G
Sbjct:   28 MDADAYLSIVQAGKAAAGLDGWRASLPWVASSAAVAEVTEVEKMIAAMTPAERRQVRLLGGAATRRVAATSGVGADKVDGLVRNVQTMAVLQKWLRKRKAAGRALPKTRKELQVMMAAPG 147          
The following BLAST results are available for this feature:
BLAST of Gvermi3734.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IX19_9FLOR9.240e-7264.09SRP_SPB domain-containing protein n=1 Tax=Gracilar... [more]
R7Q4P9_CHOCR1.690e-4044.51Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P497_PORUM5.330e-1937.50SRP_SPB domain-containing protein n=1 Tax=Porphyra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 42..126
e-value: 5.7E-8
score: 33.3
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 37..139
e-value: 4.3E-13
score: 51.5
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 4..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4115741..4116295 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3734.t1Gvermi3734.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_41 4115741..4116295 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi3734.t1 ID=Gvermi3734.t1|Name=Gvermi3734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=185bp
MDNVKSVYEEARGSTEEKRSQKIFEKQLSYLRSKDMMNPQLFHSLLQEIK
AAAGLSGIREHLPWVQNNPALGEFKEQERILSAMSPAERKDAFSIKISDI
KRIARETDTTADSVEALITQIMQMRRIQKWLSKREQAGLPIPSSPIELER
MISGSGGVKKGKGSNKMPNPGIPEKKNRRRRQLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf