Gvermi3712.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi3712.t1
Unique NameGvermi3712.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length276
Homology
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BLAST of Gvermi3712.t1 vs. uniprot
Match: R7QBM8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBM8_CHOCR)

HSP 1 Score: 180 bits (457), Expect = 3.450e-52
Identity = 89/201 (44.28%), Postives = 123/201 (61.19%), Query Frame = 0 
Query:   48 PDSSVRTHSRRVSFQTGESLSNSTPSPSLLTLLDMVVRAFETHGITYWLMPGLNLLPLSSEESIGRVLGKISPWHEGIDLGVFQSDLMNVIEAQTKLQEYGIVAVESYFGLRIFSEVGHEDSRYDFRRPFIDVVYFDEEEGHIVSGCCECVPNTVGACTKKTCDCMFCVAEIDDVFPLAKVKIDGVQSVLKAPRRTETLML 248
            P+    T  +R        ++   P P+L  LL  +  A +   +T+WL+PGL LLP       GR     +PW EG+DLGVFQ DL++VI AQ+ LQ  GIV VESYFGLR+F   GH D+RYDFR PF+D+VY  +E+G +VS CC+C P ++ +CTK TC CM CVA   + +PL  V ++GV+  ++ P     L+L
Sbjct:   62 PEWKAGTQRQRPPLSPQSQITPDNP-PTLPELLATICDALDAVNVTHWLLPGLGLLPPRRAGFDGR----FTPWQEGVDLGVFQRDLLHVILAQSSLQALGIVPVESYFGLRLFHIGGHGDARYDFRAPFVDLVYMRDEQGLVVSHCCDCAPVSISSCTKTTCGCMVCVAAGGETWPLRDVHVEGVRRSVRGPSEKGRLLL 257
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BLAST of Gvermi3712.t1 vs. uniprot
Match: A0A7S1XAJ9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAJ9_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 2.810e-25
Identity = 56/168 (33.33%), Postives = 90/168 (53.57%), Query Frame = 0 
Query:   88 ETHGITYWLMPGLNLLPLSSEESIGRVLGKISPWHEGIDLGVFQSDLMNVIEAQTKLQEYGIVAVESYFGLRIFSEVGHEDSRYDFRRPFIDVVYFDEEEGH-----IVSGCCECVPNTVGACTKKTCDCMFCVAEIDDVFPLAKVKIDGVQSVLKAPRRTETLMLHD 250
            E  G+  W+ PG  LL    E          SP+ EG+DLGV+  +   V    T L+E G   VE+YFG+RI +  G  D R+    PFID++YF E         +V+ CC+C    + +C+KKTC C+ C ++ +D+FPL ++++  ++  L  P    ++++ D
Sbjct:    4 EREGVEVWVRPGAGLLAKEGEMLTW------SPFQEGMDLGVWHKESTKVGLVLTSLREKGYDVVETYFGMRISNRNGWVDDRFLGSVPFIDILYFSEITARWGGVLVVNYCCDCAGVVISSCSKKTCGCLICASDREDIFPLRRMRVGDME--LPLPSNISSVIVPD 163
The following BLAST results are available for this feature:
BLAST of Gvermi3712.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QBM8_CHOCR3.450e-5244.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XAJ9_9RHOD2.810e-2533.33Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..275
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4059443..4060270 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3712.t1Gvermi3712.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_41 4059443..4060270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi3712.t1 ID=Gvermi3712.t1|Name=Gvermi3712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MSPHDEPPNVNAKNRLDAVLLGALSATQFSLLLVLSVVILLSLKGDIPDS
SVRTHSRRVSFQTGESLSNSTPSPSLLTLLDMVVRAFETHGITYWLMPGL
NLLPLSSEESIGRVLGKISPWHEGIDLGVFQSDLMNVIEAQTKLQEYGIV
AVESYFGLRIFSEVGHEDSRYDFRRPFIDVVYFDEEEGHIVSGCCECVPN
TVGACTKKTCDCMFCVAEIDDVFPLAKVKIDGVQSVLKAPRRTETLMLHD
TSCSVHPALRTLLERGDVAHARCER*
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