Gvermi3123.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi3123.t1
Unique NameGvermi3123.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length140
Homology
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BLAST of Gvermi3123.t1 vs. uniprot
Match: A0A2V3IGJ4_9FLOR (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGJ4_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 5.680e-28
Identity = 105/139 (75.54%), Postives = 121/139 (87.05%), Query Frame = 0 
Query:    1 MAFCASVITDHAKNYQAWEHCRFCAKLFVLEREREFTDTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWMVLTSTGTVEERGEEEMRFALNVMQRANKNEAVWNYIRALCGRGVGSELAL 139
            MA+CAS+IT+ AKNYQAWE+ RFCA  F  + EREF D +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRW+VLT TG +EERGEEEM+FAL+ M+ A++NEAVWN+I+AL  RG+G ELAL
Sbjct:  103 MAYCASIITNSAKNYQAWEYRRFCATKFGHQHEREFADIVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVVLTLTGALEERGEEEMQFALSQMKLADRNEAVWNFIQALYERGIGCELAL 241
The following BLAST results are available for this feature:
BLAST of Gvermi3123.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IGJ4_9FLOR5.680e-2875.54Protein farnesyltransferase/geranylgeranyltransfer... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002088Protein prenyltransferase, alpha subunitPFAMPF01239PPTAcoord: 2..25
e-value: 4.4E-5
score: 23.1
coord: 30..56
e-value: 3.6E-4
score: 20.2
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 29..63
score: 10.469528
NoneNo IPR availableGENE3D1.25.40.120Protein prenylyltransferasecoord: 1..137
e-value: 2.6E-32
score: 114.1
NoneNo IPR availablePANTHERPTHR11129PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITcoord: 1..131
NoneNo IPR availablePANTHERPTHR11129:SF1PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHAcoord: 1..131
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 1..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:118979..119398 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3123.t1Gvermi3123.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_41 118979..119398 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi3123.t1 ID=Gvermi3123.t1|Name=Gvermi3123.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=140bp
MAFCASVITDHAKNYQAWEHCRFCAKLFVLEREREFTDTILAEDGKKYHA
WAHRAWQVKQGLQEEDLHSTEWNVTRDLRNNSPWNHRWMVLTSTGTVEER
GEEEMRFALNVMQRANKNEAVWNYIRALCGRGVGSELAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a