Gvermi13761.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi13761.t1
Unique NameGvermi13761.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Homology
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A2V3IQ46_9FLOR (Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ46_9FLOR)

HSP 1 Score: 281 bits (718), Expect = 9.560e-94
Identity = 136/166 (81.93%), Postives = 149/166 (89.76%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 167
            TSRKG WSDLL VGDYYYEL VRIIEVCVATRPTNGGIISL ELV+ALR RR TYTENVSSDDVERAL KL+VL GGFK+M++GHRKVVQSVP+ELS+DHT ALA  EETGY +ASAL+ KL W+ +RI  TLRFLLEHEIAWLDLQT+EP+YWILGLMSGSSTFT
Sbjct:   82 TSRKGKWSDLLGVGDYYYELAVRIIEVCVATRPTNGGIISLRELVSALRIRRTTYTENVSSDDVERALAKLNVLEGGFKVMMIGHRKVVQSVPVELSVDHTNALAISEETGYISASALREKLKWEKERIMTTLRFLLEHEIAWLDLQTSEPTYWILGLMSGSSTFT 247          
BLAST of Gvermi13761.t1 vs. uniprot
Match: R7Q541_CHOCR (Vacuolar sorting protein SNF8 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q541_CHOCR)

HSP 1 Score: 238 bits (606), Expect = 9.790e-78
Identity = 111/166 (66.87%), Postives = 139/166 (83.73%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 167
            TS+KGVWSDLL VGD+YYEL VRIIE+CVATRP NGGI+SL EL+  L+T+R+TYTE +SSDDVERA+ KLDVLG GFKIM VG+ ++V+SVP+EL+ DHT+AL AC   GYT AS L+   NWD  R R TL+FLL++EIAWLD Q++EP+YWILGL++G+S+ T
Sbjct:   11 TSKKGVWSDLLGVGDFYYELAVRIIEICVATRPINGGIMSLRELLPVLQTKRITYTEKISSDDVERAVAKLDVLGSGFKIMDVGNNRLVRSVPVELNPDHTKALTACGTKGYTNASELQRLTNWDAYRTRTTLQFLLQNEIAWLDAQSSEPTYWILGLVAGASSQT 176          
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A7S0ZAI5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAI5_9RHOD)

HSP 1 Score: 187 bits (476), Expect = 4.650e-57
Identity = 83/163 (50.92%), Postives = 114/163 (69.94%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSS 164
            TS KGVWS++L VG+YYYEL +R  E+C+ TR  NGG++ ++E    L  +R TYTE+VS DD+ERA+ KL VL GGF I+ +G + V+QS+P+ELS DHT  L   E TG+ T S+  N L W   R+R+   + L+HEIAW+D QT E +YW LGL+ G++
Sbjct:   80 TSTKGVWSEVLGVGNYYYELAIRTAEICINTRVLNGGMLEVSECKKRLEQKRFTYTEHVSEDDIERAVKKLKVLQGGFDIVRLGKKSVIQSIPMELSPDHTTILRLAENTGFLTLSSTVNALKWQENRVRDAFEYFLQHEIAWIDTQTKESTYWFLGLVKGAA 242          
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A5J4Z4U0_PORPP (Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4U0_PORPP)

HSP 1 Score: 171 bits (433), Expect = 1.760e-50
Identity = 79/165 (47.88%), Postives = 112/165 (67.88%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTA--EPSYWILGLMSGSS 164
             S KGVW+  L VGDYYYEL VR  E+C+ TR  NGGI+ + E    L+ +R T+TE++S DDV RA+ KL VL GGF+++ +  + V+QS+P+ELS D   A+  CE+ G    S L +K  W  +R+   ++FLL++E+ WLDLQ A  EP+YWILGL+ G++
Sbjct:   80 VSSKGVWASTLGVGDYYYELAVRTAEICITTRVLNGGILDVEECRQRLKRKRFTFTEDISHDDVLRAVEKLKVLQGGFRLVQLDKKTVIQSMPVELSRDQVTAMQLCEDNGILLKSKLASKTGWKKERVDAAVKFLLDYEMCWLDLQYAGGEPAYWILGLVKGAA 244          
BLAST of Gvermi13761.t1 vs. uniprot
Match: F2U2T5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2T5_SALR5)

HSP 1 Score: 162 bits (409), Expect = 6.580e-47
Identity = 76/163 (46.63%), Postives = 107/163 (65.64%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSS 164
             S KG WS LL VGD+YYELGV+++E C+ATR  NGG+I + EL+ A+ TRR ++ + V++ DVE A+ +L VLG GF+++ V +R+VV S P EL+ DH       ++ GY TA AL   L W   R +  L  L++  +AW+D Q A   YW+ GLM+GSS
Sbjct:   81 ASNKGFWSQLLGVGDFYYELGVQVVEACMATRGLNGGVIDIAELLNAVNTRRGSHVQRVATGDVEEAVARLQVLGSGFRVVKVDNRRVVVSQPKELNADHMAIFNRAKDCGYVTAEALCADLKWTNDRAQTALGELVQRGVAWVDEQAAPHEYWVPGLMAGSS 243          
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A7K8XDF9_9PICI (Vacuolar-sorting protein SNF8 (Fragment) n=2 Tax=Aves TaxID=8782 RepID=A0A7K8XDF9_9PICI)

HSP 1 Score: 159 bits (403), Expect = 8.300e-47
Identity = 77/161 (47.83%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 161
            T+ KG WS++L VGD+YYELGV+IIEVC+A +  NGG+I+L EL   +   R  + ++VS DD+ RA+ KL VLG GF I+ VG   ++QSVP EL++DHT  L   E+ GY T S ++  L W+ +R +  L  LL+  +AWLD Q A EP YW+  L +
Sbjct:    5 TAGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLLRAIKKLKVLGNGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKKGYVTVSEIRTSLKWETERAKQVLEHLLKEGMAWLDTQAAGEPQYWLPALFT 165          
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A8J4PYB5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYB5_9MYCE)

HSP 1 Score: 161 bits (408), Expect = 9.050e-47
Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGS 163
             S KG WS +L VGD+YYELGV+IIEVC+  R +NGG+I +N L+  +R  R   +  +S DD+E A+ KL VLG GF I+ +  +K+VQSVP EL+ DHT  L   ++ G+TT S ++++L W+ +R  + L FLL+  IAW+D Q+ E  YW   L   S
Sbjct:   80 ASGKGFWSQVLGVGDFYYELGVQIIEVCLKYRSSNGGLIEMNLLLEYIRKMRGKNSIEISCDDIESAIGKLKVLGNGFNILKIDSKKIVQSVPCELNKDHTDVLVVAQQKGFTTVSIIQSELKWNLERTNSVLNFLLQEGIAWIDDQSTEVMYWFPSLWGNS 241          
BLAST of Gvermi13761.t1 vs. uniprot
Match: B3RR27_TRIAD (Vacuolar-sorting protein SNF8 n=2 Tax=Trichoplax TaxID=10227 RepID=B3RR27_TRIAD)

HSP 1 Score: 160 bits (406), Expect = 1.870e-46
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 161
             S KG W++LLNVGD+YYELGV++IEVC+ATRP NGGII L EL   L        E+V+ DD+ RA+ KL  LG GFK++ VG +++VQSVP+ELS+D+T  L +  +TGY +   L ++  W   R R +L  L++  + W+D Q A E  YW  GL +
Sbjct:   82 ASSKGFWAELLNVGDFYYELGVQVIEVCMATRPRNGGIIPLEELRVRLTKAHGKTREDVTVDDLSRAIKKLSTLGNGFKVIAVGSQRLVQSVPVELSMDNTAVLQSAMDTGYASIKTLCDEFQWPTDRARRSLEQLIKEGMVWIDSQNASEDLYWFPGLFN 242          
BLAST of Gvermi13761.t1 vs. uniprot
Match: A0A401P2N1_SCYTO (Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranchii TaxID=7778 RepID=A0A401P2N1_SCYTO)

HSP 1 Score: 161 bits (407), Expect = 1.900e-46
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAE-PSYWILGLMS 161
             S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+I+L+EL   +   R  + ++VS DD+ RA+ KL  LG GF I+ VG R +VQSVP EL++DHT  L   E+ GY T S +K+ L WD +R    L  LL+  +AW+D Q  E P YW+  L S
Sbjct:   81 ASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLDELHQRVLKGRGKFAQDVSQDDLIRAIKKLKSLGNGFSIIPVGGRYLVQSVPAELNMDHTVVLQIAEKNGYVTVSEIKSSLKWDTERTNQVLEHLLKEGLAWVDKQAPEEPQYWLPALFS 241          
BLAST of Gvermi13761.t1 vs. uniprot
Match: UPI0001FE5E72 (vacuolar-sorting protein SNF8 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE5E72)

HSP 1 Score: 160 bits (405), Expect = 2.430e-46
Identity = 78/162 (48.15%), Postives = 105/162 (64.81%), Query Frame = 0
Query:    2 TSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLDHTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGS 163
             S KG WS+LL VGD+YYEL V+++EVC+ATR +NGG I++ EL+  L  RR    + +S DD+ERA+ KL  LG GF I++VG +++V+SVP EL+ D T  LAA +  GY T S+L +   W  +RI   L  LL   I W+D Q +E SYW L L   S
Sbjct:   80 ASTKGFWSELLGVGDFYYELSVQVVEVCLATRASNGGFITMQELMTRLTKRRGAKAQAISEDDIERAIKKLKTLGRGFDILVVGKQRLVRSVPTELNADQTVVLAAAQTLGYVTESSLVSTHGWSAERISAALNQLLREGIVWVDDQGSERSYWPLSLQQTS 241          
The following BLAST results are available for this feature:
BLAST of Gvermi13761.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ46_9FLOR9.560e-9481.93Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariops... [more]
R7Q541_CHOCR9.790e-7866.87Vacuolar sorting protein SNF8 n=1 Tax=Chondrus cri... [more]
A0A7S0ZAI5_9RHOD4.650e-5750.92Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z4U0_PORPP1.760e-5047.88Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium... [more]
F2U2T5_SALR56.580e-4746.63Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7K8XDF9_9PICI8.300e-4747.83Vacuolar-sorting protein SNF8 (Fragment) n=2 Tax=A... [more]
A0A8J4PYB5_9MYCE9.050e-4746.30Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
B3RR27_TRIAD1.870e-4647.83Vacuolar-sorting protein SNF8 n=2 Tax=Trichoplax T... [more]
A0A401P2N1_SCYTO1.900e-4649.07Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranch... [more]
UPI0001FE5E722.430e-4648.15vacuolar-sorting protein SNF8 n=2 Tax=Capsaspora o... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 13..93
e-value: 1.6E-28
score: 100.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 94..166
e-value: 3.7E-18
score: 67.2
IPR040608Snf8/Vps36 familyPFAMPF04157EAP30coord: 3..146
e-value: 7.5E-39
score: 133.4
IPR016689ESCRT-2 complex, Snf8PANTHERPTHR12806EAP30 SUBUNIT OF ELL COMPLEXcoord: 3..163
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 3..96
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 97..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7778contigScGOVlb_7778:2..586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13761.t1Gvermi13761.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_7778 2..586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi13761.t1 ID=Gvermi13761.t1|Name=Gvermi13761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
XTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLNELVAALR
TRRMTYTENVSSDDVERALMKLDVLGGGFKIMLVGHRKVVQSVPIELSLD
HTRALAACEETGYTTASALKNKLNWDYQRIRNTLRFLLEHEIAWLDLQTA
EPSYWILGLMSGSSTFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR040608Snf8/Vps36
IPR016689ESCRT-2_cplx_Snf8
IPR036390WH_DNA-bd_sf