Gvermi12236.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12236.t1
Unique NameGvermi12236.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length267
Homology
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BLAST of Gvermi12236.t1 vs. uniprot
Match: A0A2V3J0C9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0C9_9FLOR)

HSP 1 Score: 342 bits (877), Expect = 5.860e-116
Identity = 171/266 (64.29%), Postives = 210/266 (78.95%), Query Frame = 0 
Query:    1 MDSVTPQAPDRLPPPPHFWGPFRPLFGGHTLFEAATSTILPTFLVFVWRFLFACFLVTVLVYYAVLDEYRFESLGVWIHIGLALSFFLLSMCSFLFLMQKHHPPHPSALSFCSILLYQVFATGALFFAVAYWVFLHDYALDLSFSQVVQNAATVVMLLLDIVLTLRVQFKLVYSMCFVAFVLAYVIFVWARFAITHMFVYDLLDYRQQSNGVTVACYIGGLAWALLASFFVFLLSRLSRLPCVKVRSTYSKEGSPASHRNRYFAFV 266
            M +  PQAPD LPP P FWGPFRPLFGGHTLFEAATS  LPTF+VFVWRF+F+CFL+T LVY+AV   Y+F+   VW+HIGLA+SFF LSMCSF+FL+QK H P  S L+F SILLYQ+FAT  LF  V +W  LH+Y    SF+ VVQ+AA + M+++D++L LR+QFKL+Y +CFV F L Y+ F+W RFA+T  FVYD  DYRQ +  +TVA YIG +AWA  A+F +FL+SRLSR+P VKVRST+SK+GSPASHRNRYFAFV
Sbjct:    1 MANALPQAPDDLPPAPKFWGPFRPLFGGHTLFEAATSCFLPTFVVFVWRFVFSCFLLTTLVYFAVTGVYQFQFYSVWVHIGLAISFFALSMCSFVFLLQKEHRPESSRLAFASILLYQIFATATLFLDVVFWALLHEYDEAPSFAVVVQHAANLAMVVVDLLLALRIQFKLIYCVCFVLFTLTYLAFMWIRFAVTDSFVYDFTDYRQHAAAITVAYYIGTVAWAFAAAFVMFLISRLSRVPFVKVRSTFSKDGSPASHRNRYFAFV 266
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BLAST of Gvermi12236.t1 vs. uniprot
Match: R7QCV6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCV6_CHOCR)

HSP 1 Score: 141 bits (355), Expect = 7.390e-38
Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 0 
Query:   58 TVLVYYAVLDEYRFESLGVWIHIGLALSFFLLSMCSFLFLM-QKHHPPHPSALSFCSILLYQVFATGALFFAVAYWVFLHDYALDLSFSQVVQNAATVVMLLLDIVLTLRVQFKLVYSMCFVAFVLAYVIFVWARFAITHMFVYDLLDYRQQSNGVTVACYIGGLAWALLASFFVFLLSRLSRLPCVKVR 246
            T L+ Y++   Y ++   +W HIG+A++F L +  S L+L  Q     + + L+F   L +QVFA  ALF  V +W  L D+    +F+Q+ Q+A  +V +LLD++L+ R+QFKL+Y + F+A+ + Y+ F W RFAIT  +VY  LDY  QS G+TVA Y G L WA +A+F + L+S+LSR PCV  R
Sbjct:    3 TTLIVYSIRGVYTYQFYSIWCHIGIAIAFTLNASASALYLFSQSPRRDNITFLAFFIFLWFQVFAIAALFLDVVFWTILFDFDGSPTFAQLSQHAVNLVFVLLDLLLSARMQFKLLYGVVFIAYTIGYLTFAWIRFAITDDWVYGFLDYTDQSAGLTVAYYFGVLLWAFVAAFIMILVSKLSRCPCVTAR 192
The following BLAST results are available for this feature:
BLAST of Gvermi12236.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J0C9_9FLOR5.860e-11664.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QCV6_CHOCR7.390e-3842.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 33..238
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 193..211
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 136..146
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..234
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..266
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 166..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..165
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..97
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..75
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 171..193
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 33..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3942271..3943071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12236.t1Gvermi12236.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3942271..3943071 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12236.t1 ID=Gvermi12236.t1|Name=Gvermi12236.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=267bp
MDSVTPQAPDRLPPPPHFWGPFRPLFGGHTLFEAATSTILPTFLVFVWRF
LFACFLVTVLVYYAVLDEYRFESLGVWIHIGLALSFFLLSMCSFLFLMQK
HHPPHPSALSFCSILLYQVFATGALFFAVAYWVFLHDYALDLSFSQVVQN
AATVVMLLLDIVLTLRVQFKLVYSMCFVAFVLAYVIFVWARFAITHMFVY
DLLDYRQQSNGVTVACYIGGLAWALLASFFVFLLSRLSRLPCVKVRSTYS
KEGSPASHRNRYFAFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039860Rost