Gvermi12201.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12201.t1
Unique NameGvermi12201.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length377
Homology
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BLAST of Gvermi12201.t1 vs. uniprot
Match: A0A2V3IY53_9FLOR (FA_FANCE domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY53_9FLOR)

HSP 1 Score: 343 bits (880), Expect = 1.220e-112
Identity = 187/369 (50.68%), Postives = 255/369 (69.11%), Query Frame = 0 
Query:    1 MSPNAQENLKAICRAFEVTLGGIESHGWGLWTHGADELDDWEKGILEIKQKRVS---LEVSEIIQTPDTSGAKKPEIENQTVKDGVPQTMNIS--GDSRQPKQVNALDTKNDRADGTHPEKTINGDETKELDPEEKKNAELIKNWALLSPHKDPPQKAIEQVLRSVQTSRILQYIVPIDSNPLMRAAVISSFTEKIGSTAANVIMAETIIPYVETLKAPAPREVMTAVVNFCKFHWRAAVALYVHFAHSDQRVNGATAELLGRVAAETSPEAALLALNEYSTCTWGEDGIKVIEALMAKATDRAGVIGAIVPSLEKNVIGMEKSVRFGKLLFTMIKDFPVVENEYEQVLEAVATRSQVFLAKRALSFMK 364
            +SPNAQ+NLKA+CRA E + GGI+  GW LW   A ++++W+K I  IKQK +     ++SE+ Q P   G K+    + + K+G+    N++   D    K  +  DT  D      P +  N    + +  EE+K+AE I+NWA +S H  PPQ AI+ + +S    +ILQ +VP D +PL+RAAVIS FT+KIG+T AN++M  TI+PYV+TL++PAPREVM +VV FC FHWR+A+ LY HFA  +QRVNGA AELL RV +E   EAAL AL EY T  WGEDGI+V+E L+++  ++  V+  ++PSLEKNVIGMEKSVRFGKLLFT++KD P +EN+Y Q+ E+VA RS+VFLAKRALS ++
Sbjct:   38 LSPNAQKNLKALCRALETSFGGIQDDGWDLWKDAAHDINEWDKAIEIIKQKPLEPGQYDLSEV-QLPQDMGKKEATF-SISGKNGLSDARNLADGSDISTSKPSSMKDT--DAIMSKRPAREKN----ESISAEERKSAERIRNWAQVSSHTTPPQDAIDLLSKSTDLLQILQIMVPHDVSPLVRAAVISCFTDKIGTTMANLLMNATILPYVQTLESPAPREVMKSVVRFCSFHWRSAITLYKHFAQGNQRVNGAVAELLSRVGSELKAEAALSALKEYRTGVWGEDGIRVVETLLSRCKEQPDVLELLMPSLEKNVIGMEKSVRFGKLLFTIVKDLPGIENQYAQLFESVAERSKVFLAKRALSLLR 398
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BLAST of Gvermi12201.t1 vs. uniprot
Match: R7QA35_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA35_CHOCR)

HSP 1 Score: 132 bits (333), Expect = 4.280e-34
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 0 
Query:  220 MTAVVNFCKFHWRAAVALYVHFAHSDQRVNGATAELLGRVAAETSPEAALLALNEYSTCTWGEDGIKVIEALMAKATDRAGVIGAIVPSLEKNVIGMEKSVRFGKLLFTMIKDFPVVENEYEQVLEAVATRSQVFLAKRALSFMKDK 366
            M A+V F + HWR AV LY      +  V+GA AE+L R A   +P  AL  L  +   TWGEDGI+V+EAL+ K  +       +V +LEKNV+G+EKSVRFGKLLFT+++D P V + + + +E++ +RS VFLAKRAL+ ++ K
Sbjct:    1 MQALVAFAERHWRVAVRLY-RVCAEESPVSGAVAEVLVRTAPVVAPAGALKGLRAWCEATWGEDGIRVVEALLGKCKNEEDAARLVVLALEKNVVGLEKSVRFGKLLFTVVRDLPGVADNFREQMESICSRSNVFLAKRALTVLRAK 146
The following BLAST results are available for this feature:
BLAST of Gvermi12201.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IY53_9FLOR1.220e-11250.68FA_FANCE domain-containing protein n=1 Tax=Gracila... [more]
R7QA35_CHOCR4.280e-3446.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021025Fanconi Anaemia group E protein, C-terminalPFAMPF11510FA_FANCEcoord: 188..357
e-value: 5.0E-8
score: 32.6
NoneNo IPR availableGENE3D1.25.40.480coord: 131..365
e-value: 2.8E-25
score: 91.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3834610..3835740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12201.t1Gvermi12201.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3834610..3835740 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12201.t1 ID=Gvermi12201.t1|Name=Gvermi12201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=377bp
MSPNAQENLKAICRAFEVTLGGIESHGWGLWTHGADELDDWEKGILEIKQ
KRVSLEVSEIIQTPDTSGAKKPEIENQTVKDGVPQTMNISGDSRQPKQVN
ALDTKNDRADGTHPEKTINGDETKELDPEEKKNAELIKNWALLSPHKDPP
QKAIEQVLRSVQTSRILQYIVPIDSNPLMRAAVISSFTEKIGSTAANVIM
AETIIPYVETLKAPAPREVMTAVVNFCKFHWRAAVALYVHFAHSDQRVNG
ATAELLGRVAAETSPEAALLALNEYSTCTWGEDGIKVIEALMAKATDRAG
VIGAIVPSLEKNVIGMEKSVRFGKLLFTMIKDFPVVENEYEQVLEAVATR
SQVFLAKRALSFMKDKQQQQQKQYKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021025Fanconi_anaemia_gr_E_prot_C