Gvermi9499.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi9499.t1
Unique NameGvermi9499.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24230contigScGOVlb_24230:1079822..1080682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9499Gvermi9499Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24230 1079822..1080682 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi9499.t1.stop1Gvermi9499.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24230 1079822..1079824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi9499.t1.CDS1Gvermi9499.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24230 1079822..1080682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi9499.t1.exon1Gvermi9499.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24230 1079822..1080682 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi9499.t1.start1Gvermi9499.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24230 1080680..1080682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi9499.t1Gvermi9499.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24230 1079822..1080682 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi9499.t1 ID=Gvermi9499.t1|Name=Gvermi9499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
MKKHSFSGEDPISVLNFLTRFRSACNTNGVHEGAAVWCLQFYPTGQAHSL
VQPRLTGESTIVDDPGTEILTTYPEVVNFLLKRYATDEVIADTDAEVTSY
RQNTGMTETEFSQKLWTKALRCGNVYSERRLKSLFVKGLLPSIRARVRNH
LTTHPKTTYTELARFAESYGDTHRAARRSHAPLSDKPAALRTRRASALTL
DSSTLEEVDELTLVGEQEALALTYASSQEAPSKTRTPSSPTSYASAGSFK
SVRFANTRGYAPPCRICLSREPVQCTTLTPAMRAAC*
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spliced messenger RNA

>Gvermi9499.t1 ID=Gvermi9499.t1|Name=Gvermi9499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_24230:1079822..1080682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGCACTCCTTCTCAGGCGAAGACCCCATCTCGGTGTTGAATTT
TCTCACGCGCTTCCGTTCGGCGTGTAACACAAATGGTGTCCATGAAGGTG
CCGCCGTATGGTGCTTACAGTTCTACCCCACAGGCCAAGCGCATTCATTG
GTGCAGCCACGCCTCACGGGAGAGAGCACCATTGTGGATGATCCTGGAAC
GGAGATCTTGACGACGTACCCAGAGGTAGTCAATTTCCTCCTTAAAAGGT
ACGCCACGGACGAGGTGATAGCCGATACCGATGCTGAAGTCACCTCCTAC
AGGCAGAACACCGGAATGACCGAGACAGAGTTCTCACAGAAGCTGTGGAC
GAAGGCTCTGCGGTGTGGGAATGTGTACTCCGAACGGCGGTTGAAGTCGC
TGTTTGTCAAGGGACTCCTTCCCTCGATACGCGCGAGGGTGCGTAATCAC
TTGACCACGCACCCAAAGACGACCTATACGGAGTTAGCACGTTTTGCGGA
ATCCTATGGGGATACCCACCGTGCCGCTCGCCGCAGCCATGCTCCACTTT
CGGACAAACCGGCCGCATTAAGGACCCGTCGGGCATCCGCCCTGACGTTG
GACTCCAGCACCTTGGAGGAAGTCGATGAGCTCACGCTCGTAGGAGAGCA
AGAGGCCCTTGCCCTTACATACGCCTCCTCTCAGGAAGCCCCGTCTAAAA
CGAGGACACCCTCGTCTCCCACTTCGTACGCCTCGGCAGGATCTTTCAAA
AGCGTCAGATTTGCGAACACTCGAGGCTATGCGCCGCCTTGCAGGATTTG
CTTGTCACGAGAGCCCGTACAATGTACGACTCTCACCCCGGCAATGAGGG
CCGCCTGTTGA
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protein sequence of Gvermi9499.t1

>Gvermi9499.t1 ID=Gvermi9499.t1|Name=Gvermi9499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MKKHSFSGEDPISVLNFLTRFRSACNTNGVHEGAAVWCLQFYPTGQAHSL
VQPRLTGESTIVDDPGTEILTTYPEVVNFLLKRYATDEVIADTDAEVTSY
RQNTGMTETEFSQKLWTKALRCGNVYSERRLKSLFVKGLLPSIRARVRNH
LTTHPKTTYTELARFAESYGDTHRAARRSHAPLSDKPAALRTRRASALTL
DSSTLEEVDELTLVGEQEALALTYASSQEAPSKTRTPSSPTSYASAGSFK
SVRFANTRGYAPPCRICLSREPVQCTTLTPAMRAAC*
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mRNA from alignment at ScGOVlb_24230:1079822..1080682-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi9499.t1 ID=Gvermi9499.t1|Name=Gvermi9499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_24230:1079822..1080682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGCACTCCTTCTCAGGCGAAGACCCCATCTCGGTGTTGAATTT
TCTCACGCGCTTCCGTTCGGCGTGTAACACAAATGGTGTCCATGAAGGTG
CCGCCGTATGGTGCTTACAGTTCTACCCCACAGGCCAAGCGCATTCATTG
GTGCAGCCACGCCTCACGGGAGAGAGCACCATTGTGGATGATCCTGGAAC
GGAGATCTTGACGACGTACCCAGAGGTAGTCAATTTCCTCCTTAAAAGGT
ACGCCACGGACGAGGTGATAGCCGATACCGATGCTGAAGTCACCTCCTAC
AGGCAGAACACCGGAATGACCGAGACAGAGTTCTCACAGAAGCTGTGGAC
GAAGGCTCTGCGGTGTGGGAATGTGTACTCCGAACGGCGGTTGAAGTCGC
TGTTTGTCAAGGGACTCCTTCCCTCGATACGCGCGAGGGTGCGTAATCAC
TTGACCACGCACCCAAAGACGACCTATACGGAGTTAGCACGTTTTGCGGA
ATCCTATGGGGATACCCACCGTGCCGCTCGCCGCAGCCATGCTCCACTTT
CGGACAAACCGGCCGCATTAAGGACCCGTCGGGCATCCGCCCTGACGTTG
GACTCCAGCACCTTGGAGGAAGTCGATGAGCTCACGCTCGTAGGAGAGCA
AGAGGCCCTTGCCCTTACATACGCCTCCTCTCAGGAAGCCCCGTCTAAAA
CGAGGACACCCTCGTCTCCCACTTCGTACGCCTCGGCAGGATCTTTCAAA
AGCGTCAGATTTGCGAACACTCGAGGCTATGCGCCGCCTTGCAGGATTTG
CTTGTCACGAGAGCCCGTACAATGTACGACTCTCACCCCGGCAATGAGGG
CCGCCTGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24230:1079822..1080682-

>Gvermi9499.t1 ID=Gvermi9499.t1|Name=Gvermi9499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=861bp|location=Sequence derived from alignment at ScGOVlb_24230:1079822..1080682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGCACTCCTTCTCAGGCGAAGACCCCATCTCGGTGTTGAATTT
TCTCACGCGCTTCCGTTCGGCGTGTAACACAAATGGTGTCCATGAAGGTG
CCGCCGTATGGTGCTTACAGTTCTACCCCACAGGCCAAGCGCATTCATTG
GTGCAGCCACGCCTCACGGGAGAGAGCACCATTGTGGATGATCCTGGAAC
GGAGATCTTGACGACGTACCCAGAGGTAGTCAATTTCCTCCTTAAAAGGT
ACGCCACGGACGAGGTGATAGCCGATACCGATGCTGAAGTCACCTCCTAC
AGGCAGAACACCGGAATGACCGAGACAGAGTTCTCACAGAAGCTGTGGAC
GAAGGCTCTGCGGTGTGGGAATGTGTACTCCGAACGGCGGTTGAAGTCGC
TGTTTGTCAAGGGACTCCTTCCCTCGATACGCGCGAGGGTGCGTAATCAC
TTGACCACGCACCCAAAGACGACCTATACGGAGTTAGCACGTTTTGCGGA
ATCCTATGGGGATACCCACCGTGCCGCTCGCCGCAGCCATGCTCCACTTT
CGGACAAACCGGCCGCATTAAGGACCCGTCGGGCATCCGCCCTGACGTTG
GACTCCAGCACCTTGGAGGAAGTCGATGAGCTCACGCTCGTAGGAGAGCA
AGAGGCCCTTGCCCTTACATACGCCTCCTCTCAGGAAGCCCCGTCTAAAA
CGAGGACACCCTCGTCTCCCACTTCGTACGCCTCGGCAGGATCTTTCAAA
AGCGTCAGATTTGCGAACACTCGAGGCTATGCGCCGCCTTGCAGGATTTG
CTTGTCACGAGAGCCCGTACAATGTACGACTCTCACCCCGGCAATGAGGG
CCGCCTGTTGA
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