Gvermi8858.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8858.t1
Unique NameGvermi8858.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:284297..286117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9483.ENSCJAP00000024059
Preferred nameNDOR1
PFAMsFAD_binding_1,Flavodoxin_1,NAD_binding_1
Max annot lvl33208|Metazoa
KEGG koko:K15014
KEGG TC2.A.57.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0010033,GO:0010181,GO:0016491,GO:0032553,GO:0035690,GO:0036094,GO:0036245,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045111,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071310,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901654,GO:1901655,GO:1901700,GO:1901701
Evalue1.77e-113
EggNOG OGsCOG0369@1|root,KOG1159@2759|Eukaryota,38DM1@33154|Opisthokonta,3BE84@33208|Metazoa,3CRQ3@33213|Bilateria,489XM@7711|Chordata,48VQ1@7742|Vertebrata,3JDBG@40674|Mammalia,35JH4@314146|Euarchontoglires,4MHXK@9443|Primates
DescriptionComponent of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe S cluster of CIAPIN1
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8858Gvermi8858Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 284297..286117 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8858.t1.stop1Gvermi8858.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 284297..284299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8858.t1.CDS1Gvermi8858.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 284297..286117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8858.t1.exon1Gvermi8858.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 284297..286117 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8858.t1.start1Gvermi8858.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 286115..286117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8858.t1Gvermi8858.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 284297..286117 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8858.t1 ID=Gvermi8858.t1|Name=Gvermi8858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=607bp
MAGTSIICHVLYATATGTAEDVSQQLAQQLVERGVQLKSLSAVDEYPLAN
LPSDASRGHKFIFIVSTCGDGHVPITMRTFWAFIRRANLPPTVLSHLNFA
MFGLGDRAYVKFNAAARKLCTRLIDLGASLITPLALGDDSEQGGYDTQLL
PWMESILDALTPNSTSTLVNDFESVPRVEVQRLGLSREHSSASQKWKPGE
ARRRPSAATNPLHDSVVDRVQVLTNPDALTDDKEVLHVQLDVAGCAPETQ
LLTYKPGDIIHIMPRNSESAVNAFFELTGFDGDELVDVSVRASKRQFGDL
HFNIKMPCTLRQLASAQLDLSATPRRRLFKQLAPFATLEMEREKLLHFAS
REGTDDLTQYAYREKRTILLVLRDFPSARPPLDSLIDMIPLLRPRAFSIA
SSAEAHHGSIHICASIVKYVTPLRFMRVGVCSSFLKSLSKGECVPVFLEN
GTSLRFNGERPSVLVGPGTGVAPMRSYTSTRKRQITSNILFFGCRVKDGD
FLYKNDFEAYLRDGRLTELITAFSRSDPSRKTYVQHRLEEHGKQIWDLIH
YKGAYVYLAGAAGSMPKSVRLALVAVVKKFGGLDEEASELYVKRMEAESR
LQMECW*
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spliced messenger RNA

>Gvermi8858.t1 ID=Gvermi8858.t1|Name=Gvermi8858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_2241:284297..286117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGAACATCCATCATCTGTCATGTGCTTTATGCGACCGCCACCGG
AACCGCAGAGGATGTTTCTCAACAACTGGCTCAGCAGCTTGTAGAACGCG
GTGTACAGTTGAAGTCTTTGAGCGCTGTTGATGAATACCCGCTGGCCAAT
CTTCCTAGCGATGCGTCTCGTGGTCACAAGTTCATTTTCATTGTTTCAAC
ATGTGGAGATGGCCATGTGCCCATCACCATGCGAACCTTCTGGGCCTTCA
TCCGACGTGCCAACCTTCCTCCAACGGTGCTTTCGCACCTCAACTTCGCG
ATGTTTGGATTGGGTGACAGAGCCTATGTCAAGTTCAATGCAGCCGCCAG
GAAGCTCTGCACTCGACTAATAGACCTCGGTGCTTCTTTGATCACTCCGC
TCGCTCTTGGCGACGATAGTGAGCAGGGTGGCTATGATACCCAACTTCTT
CCGTGGATGGAATCTATTCTTGATGCTCTGACTCCTAACTCAACTTCAAC
GCTTGTAAATGATTTTGAAAGTGTTCCGCGTGTCGAAGTGCAGCGCCTTG
GACTCAGCAGAGAGCACTCGAGCGCGAGCCAAAAGTGGAAACCGGGCGAA
GCCAGGCGAAGGCCATCGGCGGCAACCAATCCGCTCCACGATTCGGTTGT
GGATCGGGTGCAAGTCCTGACAAACCCTGATGCCCTGACTGATGACAAAG
AAGTGCTGCACGTCCAGCTCGACGTCGCGGGTTGCGCCCCTGAAACTCAG
TTGCTAACTTACAAACCTGGAGACATCATTCACATCATGCCGAGGAACAG
TGAATCAGCTGTGAACGCTTTTTTCGAGCTAACCGGTTTCGATGGGGATG
AGTTGGTGGACGTTTCAGTGCGGGCGAGCAAACGCCAATTCGGGGACCTG
CATTTCAACATAAAAATGCCGTGCACTTTGCGACAATTGGCATCTGCACA
ACTTGATCTTAGCGCAACGCCGCGTCGAAGGTTATTTAAGCAGCTTGCAC
CGTTTGCGACTTTGGAGATGGAAAGAGAGAAGCTTTTGCACTTTGCGTCA
AGGGAAGGGACAGACGATTTAACCCAATATGCATATCGTGAGAAGCGAAC
TATTCTGTTGGTCTTGAGAGATTTTCCTTCAGCCCGTCCACCGCTCGACT
CTTTGATTGATATGATTCCATTGTTACGGCCTCGGGCATTTTCGATTGCC
TCTTCTGCGGAGGCCCATCACGGTTCGATTCACATATGCGCATCTATTGT
GAAGTATGTAACTCCACTACGTTTTATGCGGGTTGGGGTGTGTTCTAGTT
TTTTAAAGTCGTTGAGTAAGGGGGAATGTGTGCCAGTTTTTCTTGAAAAT
GGGACGTCTCTAAGGTTCAATGGCGAGCGACCATCTGTTCTTGTAGGCCC
TGGGACAGGCGTAGCGCCTATGAGGTCGTACACGAGTACACGAAAGCGAC
AGATTACGTCCAATATTCTTTTCTTTGGATGTCGTGTGAAGGATGGAGAC
TTTTTATACAAGAACGACTTTGAAGCGTACCTTAGAGACGGAAGACTAAC
CGAGCTCATAACTGCGTTTTCTCGGAGCGACCCGTCTCGCAAAACATACG
TGCAACACCGGTTGGAGGAACATGGAAAGCAGATTTGGGACTTGATACAT
TACAAAGGTGCTTATGTATACCTAGCCGGCGCTGCTGGATCAATGCCAAA
ATCAGTGCGGCTAGCCCTCGTTGCCGTCGTCAAAAAGTTTGGTGGTCTGG
ATGAAGAGGCCTCAGAGCTGTATGTGAAGAGAATGGAAGCGGAATCTCGT
CTTCAAATGGAATGCTGGTGA
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protein sequence of Gvermi8858.t1

>Gvermi8858.t1 ID=Gvermi8858.t1|Name=Gvermi8858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=607bp
MAGTSIICHVLYATATGTAEDVSQQLAQQLVERGVQLKSLSAVDEYPLAN
LPSDASRGHKFIFIVSTCGDGHVPITMRTFWAFIRRANLPPTVLSHLNFA
MFGLGDRAYVKFNAAARKLCTRLIDLGASLITPLALGDDSEQGGYDTQLL
PWMESILDALTPNSTSTLVNDFESVPRVEVQRLGLSREHSSASQKWKPGE
ARRRPSAATNPLHDSVVDRVQVLTNPDALTDDKEVLHVQLDVAGCAPETQ
LLTYKPGDIIHIMPRNSESAVNAFFELTGFDGDELVDVSVRASKRQFGDL
HFNIKMPCTLRQLASAQLDLSATPRRRLFKQLAPFATLEMEREKLLHFAS
REGTDDLTQYAYREKRTILLVLRDFPSARPPLDSLIDMIPLLRPRAFSIA
SSAEAHHGSIHICASIVKYVTPLRFMRVGVCSSFLKSLSKGECVPVFLEN
GTSLRFNGERPSVLVGPGTGVAPMRSYTSTRKRQITSNILFFGCRVKDGD
FLYKNDFEAYLRDGRLTELITAFSRSDPSRKTYVQHRLEEHGKQIWDLIH
YKGAYVYLAGAAGSMPKSVRLALVAVVKKFGGLDEEASELYVKRMEAESR
LQMECW*
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mRNA from alignment at ScGOVlb_2241:284297..286117-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8858.t1 ID=Gvermi8858.t1|Name=Gvermi8858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_2241:284297..286117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGAACATCCATCATCTGTCATGTGCTTTATGCGACCGCCACCGG
AACCGCAGAGGATGTTTCTCAACAACTGGCTCAGCAGCTTGTAGAACGCG
GTGTACAGTTGAAGTCTTTGAGCGCTGTTGATGAATACCCGCTGGCCAAT
CTTCCTAGCGATGCGTCTCGTGGTCACAAGTTCATTTTCATTGTTTCAAC
ATGTGGAGATGGCCATGTGCCCATCACCATGCGAACCTTCTGGGCCTTCA
TCCGACGTGCCAACCTTCCTCCAACGGTGCTTTCGCACCTCAACTTCGCG
ATGTTTGGATTGGGTGACAGAGCCTATGTCAAGTTCAATGCAGCCGCCAG
GAAGCTCTGCACTCGACTAATAGACCTCGGTGCTTCTTTGATCACTCCGC
TCGCTCTTGGCGACGATAGTGAGCAGGGTGGCTATGATACCCAACTTCTT
CCGTGGATGGAATCTATTCTTGATGCTCTGACTCCTAACTCAACTTCAAC
GCTTGTAAATGATTTTGAAAGTGTTCCGCGTGTCGAAGTGCAGCGCCTTG
GACTCAGCAGAGAGCACTCGAGCGCGAGCCAAAAGTGGAAACCGGGCGAA
GCCAGGCGAAGGCCATCGGCGGCAACCAATCCGCTCCACGATTCGGTTGT
GGATCGGGTGCAAGTCCTGACAAACCCTGATGCCCTGACTGATGACAAAG
AAGTGCTGCACGTCCAGCTCGACGTCGCGGGTTGCGCCCCTGAAACTCAG
TTGCTAACTTACAAACCTGGAGACATCATTCACATCATGCCGAGGAACAG
TGAATCAGCTGTGAACGCTTTTTTCGAGCTAACCGGTTTCGATGGGGATG
AGTTGGTGGACGTTTCAGTGCGGGCGAGCAAACGCCAATTCGGGGACCTG
CATTTCAACATAAAAATGCCGTGCACTTTGCGACAATTGGCATCTGCACA
ACTTGATCTTAGCGCAACGCCGCGTCGAAGGTTATTTAAGCAGCTTGCAC
CGTTTGCGACTTTGGAGATGGAAAGAGAGAAGCTTTTGCACTTTGCGTCA
AGGGAAGGGACAGACGATTTAACCCAATATGCATATCGTGAGAAGCGAAC
TATTCTGTTGGTCTTGAGAGATTTTCCTTCAGCCCGTCCACCGCTCGACT
CTTTGATTGATATGATTCCATTGTTACGGCCTCGGGCATTTTCGATTGCC
TCTTCTGCGGAGGCCCATCACGGTTCGATTCACATATGCGCATCTATTGT
GAAGTATGTAACTCCACTACGTTTTATGCGGGTTGGGGTGTGTTCTAGTT
TTTTAAAGTCGTTGAGTAAGGGGGAATGTGTGCCAGTTTTTCTTGAAAAT
GGGACGTCTCTAAGGTTCAATGGCGAGCGACCATCTGTTCTTGTAGGCCC
TGGGACAGGCGTAGCGCCTATGAGGTCGTACACGAGTACACGAAAGCGAC
AGATTACGTCCAATATTCTTTTCTTTGGATGTCGTGTGAAGGATGGAGAC
TTTTTATACAAGAACGACTTTGAAGCGTACCTTAGAGACGGAAGACTAAC
CGAGCTCATAACTGCGTTTTCTCGGAGCGACCCGTCTCGCAAAACATACG
TGCAACACCGGTTGGAGGAACATGGAAAGCAGATTTGGGACTTGATACAT
TACAAAGGTGCTTATGTATACCTAGCCGGCGCTGCTGGATCAATGCCAAA
ATCAGTGCGGCTAGCCCTCGTTGCCGTCGTCAAAAAGTTTGGTGGTCTGG
ATGAAGAGGCCTCAGAGCTGTATGTGAAGAGAATGGAAGCGGAATCTCGT
CTTCAAATGGAATGCTGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:284297..286117-

>Gvermi8858.t1 ID=Gvermi8858.t1|Name=Gvermi8858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1821bp|location=Sequence derived from alignment at ScGOVlb_2241:284297..286117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGAACATCCATCATCTGTCATGTGCTTTATGCGACCGCCACCGG
AACCGCAGAGGATGTTTCTCAACAACTGGCTCAGCAGCTTGTAGAACGCG
GTGTACAGTTGAAGTCTTTGAGCGCTGTTGATGAATACCCGCTGGCCAAT
CTTCCTAGCGATGCGTCTCGTGGTCACAAGTTCATTTTCATTGTTTCAAC
ATGTGGAGATGGCCATGTGCCCATCACCATGCGAACCTTCTGGGCCTTCA
TCCGACGTGCCAACCTTCCTCCAACGGTGCTTTCGCACCTCAACTTCGCG
ATGTTTGGATTGGGTGACAGAGCCTATGTCAAGTTCAATGCAGCCGCCAG
GAAGCTCTGCACTCGACTAATAGACCTCGGTGCTTCTTTGATCACTCCGC
TCGCTCTTGGCGACGATAGTGAGCAGGGTGGCTATGATACCCAACTTCTT
CCGTGGATGGAATCTATTCTTGATGCTCTGACTCCTAACTCAACTTCAAC
GCTTGTAAATGATTTTGAAAGTGTTCCGCGTGTCGAAGTGCAGCGCCTTG
GACTCAGCAGAGAGCACTCGAGCGCGAGCCAAAAGTGGAAACCGGGCGAA
GCCAGGCGAAGGCCATCGGCGGCAACCAATCCGCTCCACGATTCGGTTGT
GGATCGGGTGCAAGTCCTGACAAACCCTGATGCCCTGACTGATGACAAAG
AAGTGCTGCACGTCCAGCTCGACGTCGCGGGTTGCGCCCCTGAAACTCAG
TTGCTAACTTACAAACCTGGAGACATCATTCACATCATGCCGAGGAACAG
TGAATCAGCTGTGAACGCTTTTTTCGAGCTAACCGGTTTCGATGGGGATG
AGTTGGTGGACGTTTCAGTGCGGGCGAGCAAACGCCAATTCGGGGACCTG
CATTTCAACATAAAAATGCCGTGCACTTTGCGACAATTGGCATCTGCACA
ACTTGATCTTAGCGCAACGCCGCGTCGAAGGTTATTTAAGCAGCTTGCAC
CGTTTGCGACTTTGGAGATGGAAAGAGAGAAGCTTTTGCACTTTGCGTCA
AGGGAAGGGACAGACGATTTAACCCAATATGCATATCGTGAGAAGCGAAC
TATTCTGTTGGTCTTGAGAGATTTTCCTTCAGCCCGTCCACCGCTCGACT
CTTTGATTGATATGATTCCATTGTTACGGCCTCGGGCATTTTCGATTGCC
TCTTCTGCGGAGGCCCATCACGGTTCGATTCACATATGCGCATCTATTGT
GAAGTATGTAACTCCACTACGTTTTATGCGGGTTGGGGTGTGTTCTAGTT
TTTTAAAGTCGTTGAGTAAGGGGGAATGTGTGCCAGTTTTTCTTGAAAAT
GGGACGTCTCTAAGGTTCAATGGCGAGCGACCATCTGTTCTTGTAGGCCC
TGGGACAGGCGTAGCGCCTATGAGGTCGTACACGAGTACACGAAAGCGAC
AGATTACGTCCAATATTCTTTTCTTTGGATGTCGTGTGAAGGATGGAGAC
TTTTTATACAAGAACGACTTTGAAGCGTACCTTAGAGACGGAAGACTAAC
CGAGCTCATAACTGCGTTTTCTCGGAGCGACCCGTCTCGCAAAACATACG
TGCAACACCGGTTGGAGGAACATGGAAAGCAGATTTGGGACTTGATACAT
TACAAAGGTGCTTATGTATACCTAGCCGGCGCTGCTGGATCAATGCCAAA
ATCAGTGCGGCTAGCCCTCGTTGCCGTCGTCAAAAAGTTTGGTGGTCTGG
ATGAAGAGGCCTCAGAGCTGTATGTGAAGAGAATGGAAGCGGAATCTCGT
CTTCAAATGGAATGCTGGTGA
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