Gvermi880.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi880.t1
Unique NameGvermi880.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:789533..790549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi880Gvermi880Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 789533..790549 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi880.t1.start1Gvermi880.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 789533..789535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi880.t1.CDS1Gvermi880.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 789533..790549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi880.t1.exon1Gvermi880.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 789533..790549 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi880.t1.stop1Gvermi880.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 790547..790549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi880.t1Gvermi880.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 789533..790549 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi880.t1 ID=Gvermi880.t1|Name=Gvermi880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=339bp
MCRARTPTLPLDVWHNVATHLPPAALANLSLTSAELSPIATATLQRKLWH
SVFPAAPFDAPQAHALVRILSLLSAAPSLRPKRVAAQVALLCRFGGKCSD
LVLPISACFSKSNATRFLRVDACHLSKLPLAKVTTRSSTSHFPSPNLPHV
HSFFDSDRKGPLYPLASILRAALATHTDLNNLIPHLKKALVEDERRFQRA
CIAHDFVQKLAADNRLVLERLDYCLDACAQVREFRRGTWDKKFEEYAPLV
ARLVALHSALEPCYRFLLKTDGNARLKAKRLITKLMRVRAFSVAAFARTL
EANLWWARSDENLRKMRKEMRLLHVSRSRASTVCRTSR*
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spliced messenger RNA

>Gvermi880.t1 ID=Gvermi880.t1|Name=Gvermi880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at ScGOVlb_2952:789533..790549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCGGGCGCGTACGCCCACGCTTCCGCTGGACGTATGGCACAACGT
CGCCACCCACTTGCCGCCCGCCGCGCTGGCCAACCTGTCGCTCACTTCCG
CCGAGCTGTCGCCCATCGCCACCGCCACACTGCAGCGCAAGCTGTGGCAC
TCCGTGTTCCCCGCCGCGCCGTTTGACGCCCCTCAAGCGCACGCGCTCGT
GCGCATTCTCTCGCTGTTGTCCGCCGCGCCGTCGCTGCGCCCCAAGCGCG
TGGCCGCTCAAGTGGCGCTTTTGTGCCGCTTCGGAGGCAAGTGCAGCGAC
CTGGTGCTGCCCATCTCCGCGTGCTTCTCCAAGAGCAACGCCACGCGCTT
CCTGCGCGTGGATGCGTGCCATTTGTCCAAATTGCCGTTGGCCAAGGTCA
CCACGCGCTCGTCAACCTCGCACTTTCCCTCGCCAAACCTCCCTCACGTT
CACTCTTTCTTCGACAGCGACCGCAAGGGCCCGCTGTACCCGCTGGCCTC
CATCCTGCGCGCGGCGCTCGCCACGCACACCGACCTCAACAACCTCATCC
CGCACCTCAAAAAGGCGCTCGTCGAGGACGAGCGCCGCTTTCAGCGCGCG
TGCATCGCGCACGACTTTGTACAGAAGCTGGCCGCGGACAACCGGCTGGT
GCTCGAGCGGCTGGACTACTGCTTGGACGCGTGTGCGCAGGTGAGGGAGT
TTCGGCGCGGCACGTGGGACAAGAAATTCGAGGAGTACGCGCCGCTGGTG
GCGCGGCTGGTGGCGCTGCACTCGGCACTGGAGCCGTGCTACCGCTTCCT
GCTCAAGACGGATGGCAACGCGCGACTCAAGGCCAAGCGGCTGATCACCA
AGCTGATGCGCGTGAGGGCGTTCAGCGTTGCGGCGTTTGCCCGCACGCTT
GAGGCTAACCTTTGGTGGGCTAGAAGCGACGAGAACCTGCGCAAGATGCG
GAAAGAGATGCGCTTGCTGCATGTGTCGCGCAGTCGAGCGTCTACAGTGT
GCAGGACATCGCGGTAG
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protein sequence of Gvermi880.t1

>Gvermi880.t1 ID=Gvermi880.t1|Name=Gvermi880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=339bp
MCRARTPTLPLDVWHNVATHLPPAALANLSLTSAELSPIATATLQRKLWH
SVFPAAPFDAPQAHALVRILSLLSAAPSLRPKRVAAQVALLCRFGGKCSD
LVLPISACFSKSNATRFLRVDACHLSKLPLAKVTTRSSTSHFPSPNLPHV
HSFFDSDRKGPLYPLASILRAALATHTDLNNLIPHLKKALVEDERRFQRA
CIAHDFVQKLAADNRLVLERLDYCLDACAQVREFRRGTWDKKFEEYAPLV
ARLVALHSALEPCYRFLLKTDGNARLKAKRLITKLMRVRAFSVAAFARTL
EANLWWARSDENLRKMRKEMRLLHVSRSRASTVCRTSR*
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mRNA from alignment at ScGOVlb_2952:789533..790549+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi880.t1 ID=Gvermi880.t1|Name=Gvermi880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at ScGOVlb_2952:789533..790549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTCGGGCGCGTACGCCCACGCTTCCGCTGGACGTATGGCACAACGT
CGCCACCCACTTGCCGCCCGCCGCGCTGGCCAACCTGTCGCTCACTTCCG
CCGAGCTGTCGCCCATCGCCACCGCCACACTGCAGCGCAAGCTGTGGCAC
TCCGTGTTCCCCGCCGCGCCGTTTGACGCCCCTCAAGCGCACGCGCTCGT
GCGCATTCTCTCGCTGTTGTCCGCCGCGCCGTCGCTGCGCCCCAAGCGCG
TGGCCGCTCAAGTGGCGCTTTTGTGCCGCTTCGGAGGCAAGTGCAGCGAC
CTGGTGCTGCCCATCTCCGCGTGCTTCTCCAAGAGCAACGCCACGCGCTT
CCTGCGCGTGGATGCGTGCCATTTGTCCAAATTGCCGTTGGCCAAGGTCA
CCACGCGCTCGTCAACCTCGCACTTTCCCTCGCCAAACCTCCCTCACGTT
CACTCTTTCTTCGACAGCGACCGCAAGGGCCCGCTGTACCCGCTGGCCTC
CATCCTGCGCGCGGCGCTCGCCACGCACACCGACCTCAACAACCTCATCC
CGCACCTCAAAAAGGCGCTCGTCGAGGACGAGCGCCGCTTTCAGCGCGCG
TGCATCGCGCACGACTTTGTACAGAAGCTGGCCGCGGACAACCGGCTGGT
GCTCGAGCGGCTGGACTACTGCTTGGACGCGTGTGCGCAGGTGAGGGAGT
TTCGGCGCGGCACGTGGGACAAGAAATTCGAGGAGTACGCGCCGCTGGTG
GCGCGGCTGGTGGCGCTGCACTCGGCACTGGAGCCGTGCTACCGCTTCCT
GCTCAAGACGGATGGCAACGCGCGACTCAAGGCCAAGCGGCTGATCACCA
AGCTGATGCGCGTGAGGGCGTTCAGCGTTGCGGCGTTTGCCCGCACGCTT
GAGGCTAACCTTTGGTGGGCTAGAAGCGACGAGAACCTGCGCAAGATGCG
GAAAGAGATGCGCTTGCTGCATGTGTCGCGCAGTCGAGCGTCTACAGTGT
GCAGGACATCGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:789533..790549+

>Gvermi880.t1 ID=Gvermi880.t1|Name=Gvermi880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1017bp|location=Sequence derived from alignment at ScGOVlb_2952:789533..790549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTCGGGCGCGTACGCCCACGCTTCCGCTGGACGTATGGCACAACGT
CGCCACCCACTTGCCGCCCGCCGCGCTGGCCAACCTGTCGCTCACTTCCG
CCGAGCTGTCGCCCATCGCCACCGCCACACTGCAGCGCAAGCTGTGGCAC
TCCGTGTTCCCCGCCGCGCCGTTTGACGCCCCTCAAGCGCACGCGCTCGT
GCGCATTCTCTCGCTGTTGTCCGCCGCGCCGTCGCTGCGCCCCAAGCGCG
TGGCCGCTCAAGTGGCGCTTTTGTGCCGCTTCGGAGGCAAGTGCAGCGAC
CTGGTGCTGCCCATCTCCGCGTGCTTCTCCAAGAGCAACGCCACGCGCTT
CCTGCGCGTGGATGCGTGCCATTTGTCCAAATTGCCGTTGGCCAAGGTCA
CCACGCGCTCGTCAACCTCGCACTTTCCCTCGCCAAACCTCCCTCACGTT
CACTCTTTCTTCGACAGCGACCGCAAGGGCCCGCTGTACCCGCTGGCCTC
CATCCTGCGCGCGGCGCTCGCCACGCACACCGACCTCAACAACCTCATCC
CGCACCTCAAAAAGGCGCTCGTCGAGGACGAGCGCCGCTTTCAGCGCGCG
TGCATCGCGCACGACTTTGTACAGAAGCTGGCCGCGGACAACCGGCTGGT
GCTCGAGCGGCTGGACTACTGCTTGGACGCGTGTGCGCAGGTGAGGGAGT
TTCGGCGCGGCACGTGGGACAAGAAATTCGAGGAGTACGCGCCGCTGGTG
GCGCGGCTGGTGGCGCTGCACTCGGCACTGGAGCCGTGCTACCGCTTCCT
GCTCAAGACGGATGGCAACGCGCGACTCAAGGCCAAGCGGCTGATCACCA
AGCTGATGCGCGTGAGGGCGTTCAGCGTTGCGGCGTTTGCCCGCACGCTT
GAGGCTAACCTTTGGTGGGCTAGAAGCGACGAGAACCTGCGCAAGATGCG
GAAAGAGATGCGCTTGCTGCATGTGTCGCGCAGTCGAGCGTCTACAGTGT
GCAGGACATCGCGGTAG
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