Gvermi873.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi873.t1
Unique Name	Gvermi873.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	761

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:757751..760033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	8.73e-79
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi873	Gvermi873	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 757751..760033 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi873.t1.start1	Gvermi873.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 757751..757753 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi873.t1.CDS1	Gvermi873.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 757751..760033 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi873.t1.exon1	Gvermi873.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 757751..760033 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi873.t1.stop1	Gvermi873.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 760031..760033 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi873.t1	Gvermi873.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 757751..760033 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:757751..760033+
coding sequence from alignment at ScGOVlb_2952:757751..760033+

mRNA sequence

>Gvermi873.t1 ID=Gvermi873.t1|Name=Gvermi873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=761bp
MALDSATGGFLYGLGISVALGTVFTLVFCFLRTRVPDVYYHRRLLNTWKA
YDDYNGKRVGLTHPAPSDAFLGWLKPLFVTPERDVARNIGLDAVMFLRFI
RTCFTILLVVGTFSVVILMPVFGTGRVNSTLDDPSDPADPDRVEGLRLVS
LANVPPGSARLWVVVVTEFVVAAVAIYFMRADYKAYANYRREYRNSETPV
NYALAVLDIPEEARTEKHIRRRFELVVPGQIAQVIIMKQCANAVKIGNKL
EAAVTKRELAEYVKSVNGVSPETRPGFCGCIMCHKPKVDALEYWQSEQDR
LSTELLEAGNDAPITPSAILVLSNKRAASVLAQANVATSATSWNVSRAGE
PNNINWAAFSVPSYQVEIRSIAVTAFVVVFTLFWTIPATAIVGLFSLKKL
SEVEAFKWAGKIEDASPQLASLVEGLLPPVVMSVLISLIPTLFRFVVSKE
RIVSYSIVERKTRDYFYFFTVYGSFFVIVLGASFFQDAQAIIDDPVQVID
SLASEVPGNGIFFATFIVVQTFTSLPLLFSGIVRVIIRFIMVKLAKTERQ
QRKARTGGGIFQFFRYSGHAMLIMFLSLMYTSFSPLVPLCGIVYFGVAFL
AFKYMLLFSCYQPWEGGGDMYTGAYWGTFCGLILKQLVVIAVLGLKKAAA
PAIVCIIPTVATVLLSLIIAKRYQRISEHGSLHDMFESSSKLDEIPRCYD
GVYKQPGAQVPEFANLNGVEPAVDTYEDPDYGTMSEGLESEHPNEQVGYV
PDRAAKREEV*

spliced messenger RNA

>Gvermi873.t1 ID=Gvermi873.t1|Name=Gvermi873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2283bp|location=Sequence derived from alignment at ScGOVlb_2952:757751..760033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGACAGCGCCACGGGCGGCTTTCTGTACGGTCTCGGCATCTC
CGTCGCCCTCGGTACCGTCTTCACCCTCGTCTTCTGCTTCTTGCGCACCC
GCGTGCCGGACGTGTACTACCACCGCCGCCTGTTGAACACATGGAAGGCC
TACGACGACTACAACGGCAAACGCGTCGGCCTCACCCACCCCGCGCCCTC
GGACGCCTTCCTCGGCTGGCTCAAGCCGCTCTTCGTCACCCCGGAGCGCG
ACGTCGCGCGCAACATCGGCCTGGACGCCGTCATGTTTCTGCGCTTCATC
CGCACCTGCTTCACCATCCTCCTCGTCGTCGGCACCTTCTCCGTCGTCAT
TCTCATGCCCGTCTTCGGCACGGGCCGCGTCAACAGCACCCTCGACGACC
CCAGCGACCCCGCCGACCCCGACCGCGTCGAGGGGCTGCGCCTCGTCTCG
CTGGCCAACGTCCCGCCGGGCAGCGCCCGCCTGTGGgtcgtcgtcgtcac
cgagtttgtcgtcgccgccgtcgCCATCTACTTCATGCGCGCCGACTACA
AGGCCTACGCCAACTACCGCCGCGAGTACCGCAACTCCGAGACCCCGGTC
AACTACGCCCTGGCCGTGCTGGACATCCCCGAGGAGGCGCGCACCGAGAA
GCACATCCGCCGCCGCTTTGAGCTCGTCGTGCCGGGCCAAATCGCCCAGG
TCATCATCATGAAGCAGTGCGCCAACGCCGTCAAGATCGGCAACAAGCTG
GAGGCCGCCGTCACCAAGCGCGAGCTCGCCGAGTACGTCAAGTCCGTCAA
CGGCGTCAGCCCCGAGACCCGCCCGGGCTTCTGCGGCTGCATCATGTGCC
ACAAGCCCAAGGTCGACGCCCTCGAGTACTGGCAGTCCGAGCAGGACAGG
CTCAGCACCGAGCTCCTCGAGGCCGGAAACGACGCCCCCATCACCCCGTC
CGCCATCCTCGTCCTCAGCAACAAGCGCGCCGCCTCCGTGCTGGCGCAGG
CCAACGTCGCCACCAGCGCCACCTCGTGGAATGTTTCCCGCGCTGGCGAG
CCCAATAACATCAATTGGGCCGCCTTTTCGGTGCCCAGCTACCAAGTCGA
GATTCGATCCATCGCCGTGACCGCCTTTGTCGTCGTGTTCACGCTGTTTT
GGACGATTCCCGCCACTGCCATTGTGGGGCTGTTCAGCCTGAAGAAGCTC
AGCGAGGTGGAAGCGTTCAAGTGGGCCGGCAAAATCGAAGACGCCAGCCC
GCAGTTGGCATCGCTTGTTGAAGGCTTGCTCCCCCCGGTCGTCATGTCTG
TTCTTATCAGTCTCATCCCGACTCTGTTCCGTTTTGTTGTCAGCAAGGAG
CGTATTGTCTCGTACTCCATCGTGGAGAGGAAGACCAGGGACTACTTTTA
CTTTTTCACCGTGTATGGTTCGTTTTTTGTCATTGTGTTGGGTGCGTCCT
TCTTTCAGGATGCGCAAGCCATCATTGATGACCCGGTTCAGGTCATTGAC
AGTCTGGCAAGCGAAGTGCCCGGCAACGGTATTTTCTTTGCCACCTTCAT
CGTCGTTCAGACGTTCACATCGCTTCCGCTCTTGTTCAGTGGCATTGTTC
GCGTCATTATTCGCTTCATCATGGTGAAGCTTGCCAAAACCGAGCGTCAG
CAGCGAAAGGCGCGTACCGGAGGGGGTATTTTCCAGTTCTTCCGCTATTC
TGGACATGCGATGCTCATCATGTTCCTCTCGCTCATGTACACGTCCTTCT
CTCCGTTGGTCCCTCTGTGCGGCATTGTGTATTTCGGGGTCGCGTTTCTT
GCGTTCAAGTACATGCTGCTGTTCAGCTGCTACCAGCCGTGGGAGGGTGG
CGGTGACATGTACACCGGGGCCTACTGGGGTACATTCTGCGGCCTCATCC
TCAAGCAACTGGTGGTTATCGCTGTGCTTGGGCTCAAGAAGGCGGCCGCG
CCAGCGATTGTGTGTATCATCCCCACGGTAGCCACTGTGTTGTTGTCGCT
GATCATTGCCAAGCGATACCAGAGGATCTCGGAACATGGCAGCTTGCACG
ACATGTTTGAAAGCTCATCCAAGCTGGATGAAATCCCAAGATGTTATGAT
GGCGTCTACAAGCAGCCGGGGGCACAGGTCCCGGAGTTTGCAAACTTGAA
CGGTGTTGAGCCAGCTGTCGATACTTATGAAGACCCTGACTACGGCACAA
TGAGTGAGGGACTGGAGTCTGAACATCCCAATGAGCAAGTTGGGTACGTA
CCGGACCGGGCCGCGAAGCGGGAGGAAGTCTGA

protein sequence of Gvermi873.t1

>Gvermi873.t1 ID=Gvermi873.t1|Name=Gvermi873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=761bp
MALDSATGGFLYGLGISVALGTVFTLVFCFLRTRVPDVYYHRRLLNTWKA
YDDYNGKRVGLTHPAPSDAFLGWLKPLFVTPERDVARNIGLDAVMFLRFI
RTCFTILLVVGTFSVVILMPVFGTGRVNSTLDDPSDPADPDRVEGLRLVS
LANVPPGSARLWVVVVTEFVVAAVAIYFMRADYKAYANYRREYRNSETPV
NYALAVLDIPEEARTEKHIRRRFELVVPGQIAQVIIMKQCANAVKIGNKL
EAAVTKRELAEYVKSVNGVSPETRPGFCGCIMCHKPKVDALEYWQSEQDR
LSTELLEAGNDAPITPSAILVLSNKRAASVLAQANVATSATSWNVSRAGE
PNNINWAAFSVPSYQVEIRSIAVTAFVVVFTLFWTIPATAIVGLFSLKKL
SEVEAFKWAGKIEDASPQLASLVEGLLPPVVMSVLISLIPTLFRFVVSKE
RIVSYSIVERKTRDYFYFFTVYGSFFVIVLGASFFQDAQAIIDDPVQVID
SLASEVPGNGIFFATFIVVQTFTSLPLLFSGIVRVIIRFIMVKLAKTERQ
QRKARTGGGIFQFFRYSGHAMLIMFLSLMYTSFSPLVPLCGIVYFGVAFL
AFKYMLLFSCYQPWEGGGDMYTGAYWGTFCGLILKQLVVIAVLGLKKAAA
PAIVCIIPTVATVLLSLIIAKRYQRISEHGSLHDMFESSSKLDEIPRCYD
GVYKQPGAQVPEFANLNGVEPAVDTYEDPDYGTMSEGLESEHPNEQVGYV
PDRAAKREEV*

mRNA from alignment at ScGOVlb_2952:757751..760033+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi873.t1 ID=Gvermi873.t1|Name=Gvermi873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2283bp|location=Sequence derived from alignment at ScGOVlb_2952:757751..760033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGACAGCGCCACGGGCGGCTTTCTGTACGGTCTCGGCATCTC
CGTCGCCCTCGGTACCGTCTTCACCCTCGTCTTCTGCTTCTTGCGCACCC
GCGTGCCGGACGTGTACTACCACCGCCGCCTGTTGAACACATGGAAGGCC
TACGACGACTACAACGGCAAACGCGTCGGCCTCACCCACCCCGCGCCCTC
GGACGCCTTCCTCGGCTGGCTCAAGCCGCTCTTCGTCACCCCGGAGCGCG
ACGTCGCGCGCAACATCGGCCTGGACGCCGTCATGTTTCTGCGCTTCATC
CGCACCTGCTTCACCATCCTCCTCGTCGTCGGCACCTTCTCCGTCGTCAT
TCTCATGCCCGTCTTCGGCACGGGCCGCGTCAACAGCACCCTCGACGACC
CCAGCGACCCCGCCGACCCCGACCGCGTCGAGGGGCTGCGCCTCGTCTCG
CTGGCCAACGTCCCGCCGGGCAGCGCCCGCCTGTGGgtcgtcgtcgtcac
cgagtttgtcgtcgccgccgtcgCCATCTACTTCATGCGCGCCGACTACA
AGGCCTACGCCAACTACCGCCGCGAGTACCGCAACTCCGAGACCCCGGTC
AACTACGCCCTGGCCGTGCTGGACATCCCCGAGGAGGCGCGCACCGAGAA
GCACATCCGCCGCCGCTTTGAGCTCGTCGTGCCGGGCCAAATCGCCCAGG
TCATCATCATGAAGCAGTGCGCCAACGCCGTCAAGATCGGCAACAAGCTG
GAGGCCGCCGTCACCAAGCGCGAGCTCGCCGAGTACGTCAAGTCCGTCAA
CGGCGTCAGCCCCGAGACCCGCCCGGGCTTCTGCGGCTGCATCATGTGCC
ACAAGCCCAAGGTCGACGCCCTCGAGTACTGGCAGTCCGAGCAGGACAGG
CTCAGCACCGAGCTCCTCGAGGCCGGAAACGACGCCCCCATCACCCCGTC
CGCCATCCTCGTCCTCAGCAACAAGCGCGCCGCCTCCGTGCTGGCGCAGG
CCAACGTCGCCACCAGCGCCACCTCGTGGAATGTTTCCCGCGCTGGCGAG
CCCAATAACATCAATTGGGCCGCCTTTTCGGTGCCCAGCTACCAAGTCGA
GATTCGATCCATCGCCGTGACCGCCTTTGTCGTCGTGTTCACGCTGTTTT
GGACGATTCCCGCCACTGCCATTGTGGGGCTGTTCAGCCTGAAGAAGCTC
AGCGAGGTGGAAGCGTTCAAGTGGGCCGGCAAAATCGAAGACGCCAGCCC
GCAGTTGGCATCGCTTGTTGAAGGCTTGCTCCCCCCGGTCGTCATGTCTG
TTCTTATCAGTCTCATCCCGACTCTGTTCCGTTTTGTTGTCAGCAAGGAG
CGTATTGTCTCGTACTCCATCGTGGAGAGGAAGACCAGGGACTACTTTTA
CTTTTTCACCGTGTATGGTTCGTTTTTTGTCATTGTGTTGGGTGCGTCCT
TCTTTCAGGATGCGCAAGCCATCATTGATGACCCGGTTCAGGTCATTGAC
AGTCTGGCAAGCGAAGTGCCCGGCAACGGTATTTTCTTTGCCACCTTCAT
CGTCGTTCAGACGTTCACATCGCTTCCGCTCTTGTTCAGTGGCATTGTTC
GCGTCATTATTCGCTTCATCATGGTGAAGCTTGCCAAAACCGAGCGTCAG
CAGCGAAAGGCGCGTACCGGAGGGGGTATTTTCCAGTTCTTCCGCTATTC
TGGACATGCGATGCTCATCATGTTCCTCTCGCTCATGTACACGTCCTTCT
CTCCGTTGGTCCCTCTGTGCGGCATTGTGTATTTCGGGGTCGCGTTTCTT
GCGTTCAAGTACATGCTGCTGTTCAGCTGCTACCAGCCGTGGGAGGGTGG
CGGTGACATGTACACCGGGGCCTACTGGGGTACATTCTGCGGCCTCATCC
TCAAGCAACTGGTGGTTATCGCTGTGCTTGGGCTCAAGAAGGCGGCCGCG
CCAGCGATTGTGTGTATCATCCCCACGGTAGCCACTGTGTTGTTGTCGCT
GATCATTGCCAAGCGATACCAGAGGATCTCGGAACATGGCAGCTTGCACG
ACATGTTTGAAAGCTCATCCAAGCTGGATGAAATCCCAAGATGTTATGAT
GGCGTCTACAAGCAGCCGGGGGCACAGGTCCCGGAGTTTGCAAACTTGAA
CGGTGTTGAGCCAGCTGTCGATACTTATGAAGACCCTGACTACGGCACAA
TGAGTGAGGGACTGGAGTCTGAACATCCCAATGAGCAAGTTGGGTACGTA
CCGGACCGGGCCGCGAAGCGGGAGGAAGTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_2952:757751..760033+

>Gvermi873.t1 ID=Gvermi873.t1|Name=Gvermi873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2283bp|location=Sequence derived from alignment at ScGOVlb_2952:757751..760033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGACAGCGCCACGGGCGGCTTTCTGTACGGTCTCGGCATCTC
CGTCGCCCTCGGTACCGTCTTCACCCTCGTCTTCTGCTTCTTGCGCACCC
GCGTGCCGGACGTGTACTACCACCGCCGCCTGTTGAACACATGGAAGGCC
TACGACGACTACAACGGCAAACGCGTCGGCCTCACCCACCCCGCGCCCTC
GGACGCCTTCCTCGGCTGGCTCAAGCCGCTCTTCGTCACCCCGGAGCGCG
ACGTCGCGCGCAACATCGGCCTGGACGCCGTCATGTTTCTGCGCTTCATC
CGCACCTGCTTCACCATCCTCCTCGTCGTCGGCACCTTCTCCGTCGTCAT
TCTCATGCCCGTCTTCGGCACGGGCCGCGTCAACAGCACCCTCGACGACC
CCAGCGACCCCGCCGACCCCGACCGCGTCGAGGGGCTGCGCCTCGTCTCG
CTGGCCAACGTCCCGCCGGGCAGCGCCCGCCTGTGGgtcgtcgtcgtcac
cgagtttgtcgtcgccgccgtcgCCATCTACTTCATGCGCGCCGACTACA
AGGCCTACGCCAACTACCGCCGCGAGTACCGCAACTCCGAGACCCCGGTC
AACTACGCCCTGGCCGTGCTGGACATCCCCGAGGAGGCGCGCACCGAGAA
GCACATCCGCCGCCGCTTTGAGCTCGTCGTGCCGGGCCAAATCGCCCAGG
TCATCATCATGAAGCAGTGCGCCAACGCCGTCAAGATCGGCAACAAGCTG
GAGGCCGCCGTCACCAAGCGCGAGCTCGCCGAGTACGTCAAGTCCGTCAA
CGGCGTCAGCCCCGAGACCCGCCCGGGCTTCTGCGGCTGCATCATGTGCC
ACAAGCCCAAGGTCGACGCCCTCGAGTACTGGCAGTCCGAGCAGGACAGG
CTCAGCACCGAGCTCCTCGAGGCCGGAAACGACGCCCCCATCACCCCGTC
CGCCATCCTCGTCCTCAGCAACAAGCGCGCCGCCTCCGTGCTGGCGCAGG
CCAACGTCGCCACCAGCGCCACCTCGTGGAATGTTTCCCGCGCTGGCGAG
CCCAATAACATCAATTGGGCCGCCTTTTCGGTGCCCAGCTACCAAGTCGA
GATTCGATCCATCGCCGTGACCGCCTTTGTCGTCGTGTTCACGCTGTTTT
GGACGATTCCCGCCACTGCCATTGTGGGGCTGTTCAGCCTGAAGAAGCTC
AGCGAGGTGGAAGCGTTCAAGTGGGCCGGCAAAATCGAAGACGCCAGCCC
GCAGTTGGCATCGCTTGTTGAAGGCTTGCTCCCCCCGGTCGTCATGTCTG
TTCTTATCAGTCTCATCCCGACTCTGTTCCGTTTTGTTGTCAGCAAGGAG
CGTATTGTCTCGTACTCCATCGTGGAGAGGAAGACCAGGGACTACTTTTA
CTTTTTCACCGTGTATGGTTCGTTTTTTGTCATTGTGTTGGGTGCGTCCT
TCTTTCAGGATGCGCAAGCCATCATTGATGACCCGGTTCAGGTCATTGAC
AGTCTGGCAAGCGAAGTGCCCGGCAACGGTATTTTCTTTGCCACCTTCAT
CGTCGTTCAGACGTTCACATCGCTTCCGCTCTTGTTCAGTGGCATTGTTC
GCGTCATTATTCGCTTCATCATGGTGAAGCTTGCCAAAACCGAGCGTCAG
CAGCGAAAGGCGCGTACCGGAGGGGGTATTTTCCAGTTCTTCCGCTATTC
TGGACATGCGATGCTCATCATGTTCCTCTCGCTCATGTACACGTCCTTCT
CTCCGTTGGTCCCTCTGTGCGGCATTGTGTATTTCGGGGTCGCGTTTCTT
GCGTTCAAGTACATGCTGCTGTTCAGCTGCTACCAGCCGTGGGAGGGTGG
CGGTGACATGTACACCGGGGCCTACTGGGGTACATTCTGCGGCCTCATCC
TCAAGCAACTGGTGGTTATCGCTGTGCTTGGGCTCAAGAAGGCGGCCGCG
CCAGCGATTGTGTGTATCATCCCCACGGTAGCCACTGTGTTGTTGTCGCT
GATCATTGCCAAGCGATACCAGAGGATCTCGGAACATGGCAGCTTGCACG
ACATGTTTGAAAGCTCATCCAAGCTGGATGAAATCCCAAGATGTTATGAT
GGCGTCTACAAGCAGCCGGGGGCACAGGTCCCGGAGTTTGCAAACTTGAA
CGGTGTTGAGCCAGCTGTCGATACTTATGAAGACCCTGACTACGGCACAA
TGAGTGAGGGACTGGAGTCTGAACATCCCAATGAGCAAGTTGGGTACGTA
CCGGACCGGGCCGCGAAGCGGGAGGAAGTCTGA