Gvermi864.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi864.t1
Unique NameGvermi864.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:725751..726686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi864Gvermi864Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 725751..726686 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi864.t1.stop1Gvermi864.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 725751..725753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi864.t1.CDS1Gvermi864.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 725751..726686 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi864.t1.exon1Gvermi864.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 725751..726686 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi864.t1.start1Gvermi864.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 726684..726686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi864.t1Gvermi864.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 725751..726686 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi864.t1 ID=Gvermi864.t1|Name=Gvermi864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
MDWNHGEDIGSAHAFLSLEEVRNRRVSVQEGDHVQYDDSGRYANNHTRLH
SYIFSSSQGSDCPTAKKLNFRFGKGIKNVKIQVVGLVDCAVKYGGETVKS
TGRFASCFKSYIITEASSCFNPKGVRIRSGLMAKNSGNAPPLKDVPLVPA
QISRNDSDLGQKANEEKLIERVKSKLPSQEPVPSVESGFVKRAIQSYKFN
VLNEGKAESSVNVDTGLEKTSDSSSPGLRDYSFSEHVEHSVLSSQSELPA
SEVRVKEMTANSKKEHESRIQVSDDFKNGFVARIAESLDYFIDHEQHESL
HSLRPISPMST*
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spliced messenger RNA

>Gvermi864.t1 ID=Gvermi864.t1|Name=Gvermi864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_2952:725751..726686- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTGGAATCATGGAGAAGATATTGGAAGCGCCCATGCTTTCCTGAG
TCTGGAAGAAGTTCGGAATCGAAGGGTTTCCGTGCAGGAGGGAGACCATG
TTCAATACGACGACAGTGGTCGATATGCTAACAATCACACTAGGCTACAC
TCGTACATTTTTTCCTCCAGTCAAGGATCAGACTGTCCCACAGCAAAGAA
ACTGAACTTCCGATTCGGCAAAGGCATTAAAAACGTCAAAATTCAGGTCG
TTGGTCTTGTTGACTGCGCAGTCAAATACGGGGGGGAAACAGTGAAAAGT
ACAGGGCGCTTTGCCTCGTGCTTCAAATCATATATAATCACTGAAGCCAG
TTCTTGCTTCAATCCAAAAGGTGTCAGAATTCGTTCAGGGCTGATGGCGA
AAAACTCTGGCAATGCTCCACCTTTGAAAGACGTTCCGCTTGTACCTGCC
CAAATCTCGAGGAATGATTCTGATTTAGGGCAAAAAGCAAATGAAGAAAA
ACTTATTGAACGTGTGAAGAGCAAGCTTCCAAGCCAAGAACCAGTCCCCA
GTGTGGAATCAGGTTTTGTCAAACGAGCGATTCAGTCATACAAATTTAAT
GTTCTCAATGAAGGAAAAGCGGAATCCTCCGTCAATGTGGATACGGGACT
GGAAAAAACTTCCGACTCGTCATCCCCTGGACTCCGAGACTACAGTTTTT
CAGAGCATGTTGAACATTCAGTCCTATCAAGTCAAAGTGAATTACCTGCA
TCAGAAGTGAGAGTGAAAGAGATGACGGCCAATTCGAAGAAAGAACATGA
ATCTAGAATCCAAGTCTCCGATGATTTCAAGAACGGCTTTGTGGCGCGCA
TAGCAGAGTCGCTTGACTACTTCATTGACCATGAGCAACATGAAAGCCTC
CACAGCCTGCGTCCGATAAGTCCAATGTCCACCTGA
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protein sequence of Gvermi864.t1

>Gvermi864.t1 ID=Gvermi864.t1|Name=Gvermi864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MDWNHGEDIGSAHAFLSLEEVRNRRVSVQEGDHVQYDDSGRYANNHTRLH
SYIFSSSQGSDCPTAKKLNFRFGKGIKNVKIQVVGLVDCAVKYGGETVKS
TGRFASCFKSYIITEASSCFNPKGVRIRSGLMAKNSGNAPPLKDVPLVPA
QISRNDSDLGQKANEEKLIERVKSKLPSQEPVPSVESGFVKRAIQSYKFN
VLNEGKAESSVNVDTGLEKTSDSSSPGLRDYSFSEHVEHSVLSSQSELPA
SEVRVKEMTANSKKEHESRIQVSDDFKNGFVARIAESLDYFIDHEQHESL
HSLRPISPMST*
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mRNA from alignment at ScGOVlb_2952:725751..726686-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi864.t1 ID=Gvermi864.t1|Name=Gvermi864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_2952:725751..726686- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTGGAATCATGGAGAAGATATTGGAAGCGCCCATGCTTTCCTGAG
TCTGGAAGAAGTTCGGAATCGAAGGGTTTCCGTGCAGGAGGGAGACCATG
TTCAATACGACGACAGTGGTCGATATGCTAACAATCACACTAGGCTACAC
TCGTACATTTTTTCCTCCAGTCAAGGATCAGACTGTCCCACAGCAAAGAA
ACTGAACTTCCGATTCGGCAAAGGCATTAAAAACGTCAAAATTCAGGTCG
TTGGTCTTGTTGACTGCGCAGTCAAATACGGGGGGGAAACAGTGAAAAGT
ACAGGGCGCTTTGCCTCGTGCTTCAAATCATATATAATCACTGAAGCCAG
TTCTTGCTTCAATCCAAAAGGTGTCAGAATTCGTTCAGGGCTGATGGCGA
AAAACTCTGGCAATGCTCCACCTTTGAAAGACGTTCCGCTTGTACCTGCC
CAAATCTCGAGGAATGATTCTGATTTAGGGCAAAAAGCAAATGAAGAAAA
ACTTATTGAACGTGTGAAGAGCAAGCTTCCAAGCCAAGAACCAGTCCCCA
GTGTGGAATCAGGTTTTGTCAAACGAGCGATTCAGTCATACAAATTTAAT
GTTCTCAATGAAGGAAAAGCGGAATCCTCCGTCAATGTGGATACGGGACT
GGAAAAAACTTCCGACTCGTCATCCCCTGGACTCCGAGACTACAGTTTTT
CAGAGCATGTTGAACATTCAGTCCTATCAAGTCAAAGTGAATTACCTGCA
TCAGAAGTGAGAGTGAAAGAGATGACGGCCAATTCGAAGAAAGAACATGA
ATCTAGAATCCAAGTCTCCGATGATTTCAAGAACGGCTTTGTGGCGCGCA
TAGCAGAGTCGCTTGACTACTTCATTGACCATGAGCAACATGAAAGCCTC
CACAGCCTGCGTCCGATAAGTCCAATGTCCACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:725751..726686-

>Gvermi864.t1 ID=Gvermi864.t1|Name=Gvermi864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_2952:725751..726686- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTGGAATCATGGAGAAGATATTGGAAGCGCCCATGCTTTCCTGAG
TCTGGAAGAAGTTCGGAATCGAAGGGTTTCCGTGCAGGAGGGAGACCATG
TTCAATACGACGACAGTGGTCGATATGCTAACAATCACACTAGGCTACAC
TCGTACATTTTTTCCTCCAGTCAAGGATCAGACTGTCCCACAGCAAAGAA
ACTGAACTTCCGATTCGGCAAAGGCATTAAAAACGTCAAAATTCAGGTCG
TTGGTCTTGTTGACTGCGCAGTCAAATACGGGGGGGAAACAGTGAAAAGT
ACAGGGCGCTTTGCCTCGTGCTTCAAATCATATATAATCACTGAAGCCAG
TTCTTGCTTCAATCCAAAAGGTGTCAGAATTCGTTCAGGGCTGATGGCGA
AAAACTCTGGCAATGCTCCACCTTTGAAAGACGTTCCGCTTGTACCTGCC
CAAATCTCGAGGAATGATTCTGATTTAGGGCAAAAAGCAAATGAAGAAAA
ACTTATTGAACGTGTGAAGAGCAAGCTTCCAAGCCAAGAACCAGTCCCCA
GTGTGGAATCAGGTTTTGTCAAACGAGCGATTCAGTCATACAAATTTAAT
GTTCTCAATGAAGGAAAAGCGGAATCCTCCGTCAATGTGGATACGGGACT
GGAAAAAACTTCCGACTCGTCATCCCCTGGACTCCGAGACTACAGTTTTT
CAGAGCATGTTGAACATTCAGTCCTATCAAGTCAAAGTGAATTACCTGCA
TCAGAAGTGAGAGTGAAAGAGATGACGGCCAATTCGAAGAAAGAACATGA
ATCTAGAATCCAAGTCTCCGATGATTTCAAGAACGGCTTTGTGGCGCGCA
TAGCAGAGTCGCTTGACTACTTCATTGACCATGAGCAACATGAAAGCCTC
CACAGCCTGCGTCCGATAAGTCCAATGTCCACCTGA
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