Gvermi8215.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8215.t1
Unique NameGvermi8215.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1594939..1596405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001746819.1
Preferred nameUMPS
PFAMsOMPdecase,Pribosyltran
Max annot lvl33154|Opisthokonta
KEGG rclassRC00063,RC00409,RC00611
KEGG koko:K01591,ko:K13421
KEGG ReactionR00965,R01870,R08231
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000909,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004588,GO:0004590,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006996,GO:0007033,GO:0007040,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009314,GO:0009405,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0014070,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016763,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019860,GO:0019953,GO:0022414,GO:0022610,GO:0030447,GO:0030582,GO:0030584,GO:0031012,GO:0032501,GO:0032502,GO:0032504,GO:0034404,GO:0034641,GO:0034654,GO:0035239,GO:0035295,GO:0040007,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0042221,GO:0042455,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044182,GO:0044205,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045927,GO:0046049,GO:0046107,GO:0046108,GO:0046109,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0048513,GO:0048518,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048598,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051179,GO:0051239,GO:0051240,GO:0051674,GO:0051704,GO:0055086,GO:0055123,GO:0060378,GO:0061458,GO:0062039,GO:0062040,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0075259,GO:0080171,GO:0090407,GO:0090727,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue3.23e-167
EggNOG OGsCOG0461@1|root,KOG1377@2759|Eukaryota,38EAF@33154|Opisthokonta
EC2.4.2.10,4.1.1.23
Descriptionorotidine-5'-phosphate decarboxylase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8215Gvermi8215Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1594939..1596405 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8215.t1.stop1Gvermi8215.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1594939..1594941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8215.t1.CDS1Gvermi8215.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1594939..1596405 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8215.t1.exon1Gvermi8215.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1594939..1596405 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8215.t1.start1Gvermi8215.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1596403..1596405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8215.t1Gvermi8215.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1594939..1596405 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8215.t1 ID=Gvermi8215.t1|Name=Gvermi8215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp
MTVQGSKAGALLRQKNIILKLFEVDAFKFGEFTLKSGIKSPIYIDLRVSV
SYPDLLSQIAEELLHTVSTVEYDLLCGVPYTALPFATAMSLSSSRPMVMR
RKEVKTYGTKKIIEGKFLKDQRCLIVEDLVTSGMSVQETVHPLVQEGLKV
TDVVVLLDRQQGALENLKSKGLTLHSAFSLTNVLDILLEEKKIVSDVKDM
VMKFIKANQVSAKPTPSPAAPISSISYEEKAAKMQNLVGRRLLELMVSKK
TNLAVSADVTSKAELFELAETVGPEICLLKTHADIIEDWDQNTGAALMEI
AKRLNFMLFEDRKFADIGNTVHFQAAGGIHKICRWADVINAHSVPGPGLI
SGLEKACDSVREDRKASLGLLLLAEMSSKGNLASGLPEYTNKTVEMAKDS
KSFVFGFISMGKVADDSFVYMTPGVKLAPGVDGLGQQYLTPEVVITEKSS
DVIIVGRGIYQADDRLKAAKAYRLAGWKAYEKRCSGVK*
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spliced messenger RNA

>Gvermi8215.t1 ID=Gvermi8215.t1|Name=Gvermi8215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_24226:1594939..1596405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTACAAGGATCCAAAGCAGGTGCTCTTCTCCGACAAAAGAACAT
AATACTCAAACTTTTTGAAGTGGATGCTTTCAAGTTTGGGGAATTTACCC
TCAAGTCCGGGATAAAGTCCCCGATCTACATTGATTTGCGAGTTTCTGTG
TCGTATCCAGACTTACTATCCCAGATAGCCGAAGAGCTGCTACACACCGT
TTCTACTGTCGAATATGACTTGCTTTGCGGAGTGCCGTATACAGCTCTTC
CATTTGCCACAGCAATGAGTCTTTCCTCCTCAAGGCCAATGGTTATGCGC
CGAAAAGAGGTCAAGACCTATGGCACAAAGAAAATTATAGAAGGAAAATT
TCTCAAGGATCAGCGGTGTCTCATTGTTGAAGATTTAGTCACCAGCGGAA
TGAGTGTTCAGGAAACTGTACATCCTCTTGTCCAAGAAGGATTAAAGGTG
ACTGATGTTGTCGTGCTTCTGGATCGTCAGCAAGGCGCACTCGAGAATCT
GAAGTCCAAGGGTCTGACGCTACATTCAGCTTTCTCTCTCACTAATGTTT
TGGATATTCTTTTGGAAGAGAAAAAGATCGTTTCTGACGTGAAAGACATG
GTCATGAAGTTCATCAAAGCAAATCAAGTTTCCGCAAAACCCACACCTTC
TCCGGCGGCACCAATTAGTAGTATTTCGTATGAAGAAAAGGCTGCTAAGA
TGCAAAACCTTGTTGGTCGTCGTTTATTAGAACTCATGGTTTCGAAGAAG
ACAAATCTTGCGGTCTCGGCCGATGTTACCTCCAAGGCTGAATTGTTTGA
ACTCGCAGAAACAGTGGGTCCCGAAATCTGTCTTTTGAAAACACATGCCG
ACATTATTGAAGACTGGGATCAAAATACTGGTGCTGCTCTCATGGAAATA
GCGAAGAGGTTGAACTTCATGCTCTTCGAAGATAGAAAATTTGCTGACAT
TGGTAATACTGTTCATTTCCAGGCCGCAGGTGGAATCCACAAAATATGTA
GATGGGCAGATGTTATTAACGCGCACTCCGTTCCTGGTCCGGGCCTGATA
TCCGGATTAGAGAAAGCCTGTGACTCCGTCCGCGAAGATAGGAAAGCATC
TTTGGGCTTGCTCTTGCTGGCGGAAATGAGCAGTAAGGGGAATTTGGCTT
CTGGTCTGCCAGAGTACACAAACAAAACTGTTGAAATGGCGAAGGATTCC
AAAAGCTTTGTGTTTGGGTTTATTAGTATGGGAAAAGTGGCGGATGACAG
TTTTGTGTACATGACTCCAGGAGTAAAGCTTGCGCCTGGTGTTGACGGAC
TTGGACAACAATATTTGACGCCAGAAGTGGTCATTACCGAGAAGAGTTCT
GATGTTATTATTGTTGGACGTGGTATATACCAGGCTGACGACAGGTTGAA
GGCTGCGAAGGCGTATCGTCTTGCTGGGTGGAAAGCATACGAGAAACGCT
GCAGTGGCGTGAAATAA
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protein sequence of Gvermi8215.t1

>Gvermi8215.t1 ID=Gvermi8215.t1|Name=Gvermi8215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=489bp
MTVQGSKAGALLRQKNIILKLFEVDAFKFGEFTLKSGIKSPIYIDLRVSV
SYPDLLSQIAEELLHTVSTVEYDLLCGVPYTALPFATAMSLSSSRPMVMR
RKEVKTYGTKKIIEGKFLKDQRCLIVEDLVTSGMSVQETVHPLVQEGLKV
TDVVVLLDRQQGALENLKSKGLTLHSAFSLTNVLDILLEEKKIVSDVKDM
VMKFIKANQVSAKPTPSPAAPISSISYEEKAAKMQNLVGRRLLELMVSKK
TNLAVSADVTSKAELFELAETVGPEICLLKTHADIIEDWDQNTGAALMEI
AKRLNFMLFEDRKFADIGNTVHFQAAGGIHKICRWADVINAHSVPGPGLI
SGLEKACDSVREDRKASLGLLLLAEMSSKGNLASGLPEYTNKTVEMAKDS
KSFVFGFISMGKVADDSFVYMTPGVKLAPGVDGLGQQYLTPEVVITEKSS
DVIIVGRGIYQADDRLKAAKAYRLAGWKAYEKRCSGVK*
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mRNA from alignment at ScGOVlb_24226:1594939..1596405-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8215.t1 ID=Gvermi8215.t1|Name=Gvermi8215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_24226:1594939..1596405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTACAAGGATCCAAAGCAGGTGCTCTTCTCCGACAAAAGAACAT
AATACTCAAACTTTTTGAAGTGGATGCTTTCAAGTTTGGGGAATTTACCC
TCAAGTCCGGGATAAAGTCCCCGATCTACATTGATTTGCGAGTTTCTGTG
TCGTATCCAGACTTACTATCCCAGATAGCCGAAGAGCTGCTACACACCGT
TTCTACTGTCGAATATGACTTGCTTTGCGGAGTGCCGTATACAGCTCTTC
CATTTGCCACAGCAATGAGTCTTTCCTCCTCAAGGCCAATGGTTATGCGC
CGAAAAGAGGTCAAGACCTATGGCACAAAGAAAATTATAGAAGGAAAATT
TCTCAAGGATCAGCGGTGTCTCATTGTTGAAGATTTAGTCACCAGCGGAA
TGAGTGTTCAGGAAACTGTACATCCTCTTGTCCAAGAAGGATTAAAGGTG
ACTGATGTTGTCGTGCTTCTGGATCGTCAGCAAGGCGCACTCGAGAATCT
GAAGTCCAAGGGTCTGACGCTACATTCAGCTTTCTCTCTCACTAATGTTT
TGGATATTCTTTTGGAAGAGAAAAAGATCGTTTCTGACGTGAAAGACATG
GTCATGAAGTTCATCAAAGCAAATCAAGTTTCCGCAAAACCCACACCTTC
TCCGGCGGCACCAATTAGTAGTATTTCGTATGAAGAAAAGGCTGCTAAGA
TGCAAAACCTTGTTGGTCGTCGTTTATTAGAACTCATGGTTTCGAAGAAG
ACAAATCTTGCGGTCTCGGCCGATGTTACCTCCAAGGCTGAATTGTTTGA
ACTCGCAGAAACAGTGGGTCCCGAAATCTGTCTTTTGAAAACACATGCCG
ACATTATTGAAGACTGGGATCAAAATACTGGTGCTGCTCTCATGGAAATA
GCGAAGAGGTTGAACTTCATGCTCTTCGAAGATAGAAAATTTGCTGACAT
TGGTAATACTGTTCATTTCCAGGCCGCAGGTGGAATCCACAAAATATGTA
GATGGGCAGATGTTATTAACGCGCACTCCGTTCCTGGTCCGGGCCTGATA
TCCGGATTAGAGAAAGCCTGTGACTCCGTCCGCGAAGATAGGAAAGCATC
TTTGGGCTTGCTCTTGCTGGCGGAAATGAGCAGTAAGGGGAATTTGGCTT
CTGGTCTGCCAGAGTACACAAACAAAACTGTTGAAATGGCGAAGGATTCC
AAAAGCTTTGTGTTTGGGTTTATTAGTATGGGAAAAGTGGCGGATGACAG
TTTTGTGTACATGACTCCAGGAGTAAAGCTTGCGCCTGGTGTTGACGGAC
TTGGACAACAATATTTGACGCCAGAAGTGGTCATTACCGAGAAGAGTTCT
GATGTTATTATTGTTGGACGTGGTATATACCAGGCTGACGACAGGTTGAA
GGCTGCGAAGGCGTATCGTCTTGCTGGGTGGAAAGCATACGAGAAACGCT
GCAGTGGCGTGAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1594939..1596405-

>Gvermi8215.t1 ID=Gvermi8215.t1|Name=Gvermi8215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1467bp|location=Sequence derived from alignment at ScGOVlb_24226:1594939..1596405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTACAAGGATCCAAAGCAGGTGCTCTTCTCCGACAAAAGAACAT
AATACTCAAACTTTTTGAAGTGGATGCTTTCAAGTTTGGGGAATTTACCC
TCAAGTCCGGGATAAAGTCCCCGATCTACATTGATTTGCGAGTTTCTGTG
TCGTATCCAGACTTACTATCCCAGATAGCCGAAGAGCTGCTACACACCGT
TTCTACTGTCGAATATGACTTGCTTTGCGGAGTGCCGTATACAGCTCTTC
CATTTGCCACAGCAATGAGTCTTTCCTCCTCAAGGCCAATGGTTATGCGC
CGAAAAGAGGTCAAGACCTATGGCACAAAGAAAATTATAGAAGGAAAATT
TCTCAAGGATCAGCGGTGTCTCATTGTTGAAGATTTAGTCACCAGCGGAA
TGAGTGTTCAGGAAACTGTACATCCTCTTGTCCAAGAAGGATTAAAGGTG
ACTGATGTTGTCGTGCTTCTGGATCGTCAGCAAGGCGCACTCGAGAATCT
GAAGTCCAAGGGTCTGACGCTACATTCAGCTTTCTCTCTCACTAATGTTT
TGGATATTCTTTTGGAAGAGAAAAAGATCGTTTCTGACGTGAAAGACATG
GTCATGAAGTTCATCAAAGCAAATCAAGTTTCCGCAAAACCCACACCTTC
TCCGGCGGCACCAATTAGTAGTATTTCGTATGAAGAAAAGGCTGCTAAGA
TGCAAAACCTTGTTGGTCGTCGTTTATTAGAACTCATGGTTTCGAAGAAG
ACAAATCTTGCGGTCTCGGCCGATGTTACCTCCAAGGCTGAATTGTTTGA
ACTCGCAGAAACAGTGGGTCCCGAAATCTGTCTTTTGAAAACACATGCCG
ACATTATTGAAGACTGGGATCAAAATACTGGTGCTGCTCTCATGGAAATA
GCGAAGAGGTTGAACTTCATGCTCTTCGAAGATAGAAAATTTGCTGACAT
TGGTAATACTGTTCATTTCCAGGCCGCAGGTGGAATCCACAAAATATGTA
GATGGGCAGATGTTATTAACGCGCACTCCGTTCCTGGTCCGGGCCTGATA
TCCGGATTAGAGAAAGCCTGTGACTCCGTCCGCGAAGATAGGAAAGCATC
TTTGGGCTTGCTCTTGCTGGCGGAAATGAGCAGTAAGGGGAATTTGGCTT
CTGGTCTGCCAGAGTACACAAACAAAACTGTTGAAATGGCGAAGGATTCC
AAAAGCTTTGTGTTTGGGTTTATTAGTATGGGAAAAGTGGCGGATGACAG
TTTTGTGTACATGACTCCAGGAGTAAAGCTTGCGCCTGGTGTTGACGGAC
TTGGACAACAATATTTGACGCCAGAAGTGGTCATTACCGAGAAGAGTTCT
GATGTTATTATTGTTGGACGTGGTATATACCAGGCTGACGACAGGTTGAA
GGCTGCGAAGGCGTATCGTCTTGCTGGGTGGAAAGCATACGAGAAACGCT
GCAGTGGCGTGAAATAA
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