Gvermi8210.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8210.t1
Unique NameGvermi8210.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1578617..1579969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926550.CLDAP_27380
PFAMsMoCF_biosynth,MoeA_C,MoeA_N
Max annot lvl200795|Chloroflexi
KEGG rclassRC00002,RC03462
KEGG koko:K03750,ko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
Evalue2.29e-96
EggNOG OGsCOG0303@1|root,COG0303@2|Bacteria,2G6AK@200795|Chloroflexi
EC2.10.1.1,2.7.7.75
DescriptionMoeA domain protein domain I and II
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8210Gvermi8210Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1578617..1579969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1Gvermi8210.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1578617..1579969 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1.start1Gvermi8210.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1578617..1578619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1.CDS1Gvermi8210.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1578617..1579708 +
Gvermi8210.t1.CDS2Gvermi8210.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1579796..1579969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1.exon1Gvermi8210.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1578617..1579708 +
Gvermi8210.t1.exon2Gvermi8210.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1579796..1579969 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1.intron1Gvermi8210.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1579709..1579795 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8210.t1.stop1Gvermi8210.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1579967..1579969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8210.t1 ID=Gvermi8210.t1|Name=Gvermi8210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=422bp
MAPSPERSMYPLVPMHEALEKIAATLSALPVISVPTTKALHHLLAVDVHA
PRPQPPFRASVKDGYAVTLPLAEPLKVSASSHAGSNTCVSISAGLAAYVT
TGAPVPEGAHAVVMVENCMREGDALSFAKGLDVTQGQDIREIGCDVAAGE
LVLAAGTYLGAAEIGILASCACASIQVYDRPVIGVFSSGDEILDVNKLPQ
EMPYGSIIDSNRPMLLACIQEALPFCTALDLGVVPDSESVVTEALRDATR
RCHIVITTGGVSMGRRDYIKPVLEKIATVHFGRVLMKPGKPLTYATTSEH
NCFVALPGNPVSCFVCFHLAVAVAARKLAGWSGERVMGMRVDVSLAHPVR
LDKQRPEYHRATLQYVPEQGYVGTSTGKQASSRLLSTRSADALLMLPKGD
GSLPAGAKVKAQLLPHYIFSC*
back to top

spliced messenger RNA

>Gvermi8210.t1 ID=Gvermi8210.t1|Name=Gvermi8210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at ScGOVlb_24226:1578617..1579969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCTCTCCAGAACGCTCGATGTATCCCCTCGTTCCAATGCATGA
GGCGTTGGAAAAGATTGCGGCCACACTTTCAGCACTGCCAGTCATATCCG
TCCCGACCACAAAAGCACTTCATCATTTGCTTGCGGTCGATGTGCACGCT
CCTCGGCCTCAACCCCCCTTTCGCGCTTCGGTTAAAGATGGGTACGCAGT
TACTTTGCCGCTCGCCGAGCCTCTGAAAGTGTCGGCCTCATCGCACGCGG
GATCCAACACCTGTGTGAGCATCTCTGCGGGGTTGGCAGCCTACGTCACC
ACTGGCGCGCCAGTCCCCGAAGGCGCACACGCTGTTGTCATGGTAGAGAA
CTGTATGCGTGAAGGAGATGCACTTTCATTTGCGAAAGGGCTGGACGTAA
CGCAGGGGCAAGACATTCGCGAGATCGGGTGTGATGTGGCAGCGGGTGAA
CTCGTGCTCGCAGCGGGCACGTATCTCGGAGCGGCTGAGATCGGCATTCT
TGCCAGCTGTGCATGCGCATCCATTCAAGTTTATGATCGCCCGGTTATTG
GGGTGTTTTCAAGCGGGGATGAGATTCTTGACGTCAACAAGCTCCCACAA
GAAATGCCTTACGGTTCTATAATCGACTCAAATCGACCCATGCTTCTCGC
GTGCATCCAGGAAGCGCTTCCTTTCTGTACCGCACTTGACCTTGGTGTGG
TGCCAGACAGTGAATCGGTTGTGACAGAAGCGCTTCGAGATGCAACAAGA
AGGTGCCACATTGTCATTACTACCGGCGGGGTGTCCATGGGAAGACGAGA
CTACATAAAACCGGTTTTGGAAAAGATAGCCACCGTACATTTTGGCCGCG
TGTTGATGAAGCCCGGCAAACCGCTCACGTACGCAACAACGTCTGAGCAC
AACTGTTTTGTCGCATTACCTGGCAATCCCGTAAGTTGCTTTGTGTGTTT
TCACCTGGCAGTGGCAGTGGCAGCAAGGAAACTTGCTGGCTGGAGCGGTG
AGCGTGTGATGGGGATGCGAGTGGACGTCTCTCTTGCACACCCTGTGAGA
CTCGATAAGCAAAGGCCAGAGTATCATCGGGCCACTTTGCAGTACGTCCC
CGAACAAGGGTACGTTGGTACATCAACAGGGAAGCAGGCCAGCTCGAGAT
TGTTATCGACAAGGTCGGCCGATGCGCTTTTGATGCTGCCGAAGGGCGAC
GGTTCACTTCCGGCTGGGGCCAAAGTAAAGGCGCAGCTTCTCCCGCACTA
CATTTTTTCTTGTTAG
back to top

protein sequence of Gvermi8210.t1

>Gvermi8210.t1 ID=Gvermi8210.t1|Name=Gvermi8210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=422bp
MAPSPERSMYPLVPMHEALEKIAATLSALPVISVPTTKALHHLLAVDVHA
PRPQPPFRASVKDGYAVTLPLAEPLKVSASSHAGSNTCVSISAGLAAYVT
TGAPVPEGAHAVVMVENCMREGDALSFAKGLDVTQGQDIREIGCDVAAGE
LVLAAGTYLGAAEIGILASCACASIQVYDRPVIGVFSSGDEILDVNKLPQ
EMPYGSIIDSNRPMLLACIQEALPFCTALDLGVVPDSESVVTEALRDATR
RCHIVITTGGVSMGRRDYIKPVLEKIATVHFGRVLMKPGKPLTYATTSEH
NCFVALPGNPVSCFVCFHLAVAVAARKLAGWSGERVMGMRVDVSLAHPVR
LDKQRPEYHRATLQYVPEQGYVGTSTGKQASSRLLSTRSADALLMLPKGD
GSLPAGAKVKAQLLPHYIFSC*
back to top

mRNA from alignment at ScGOVlb_24226:1578617..1579969+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8210.t1 ID=Gvermi8210.t1|Name=Gvermi8210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_24226:1578617..1579969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCTCTCCAGAACGCTCGATGTATCCCCTCGTTCCAATGCATGA
GGCGTTGGAAAAGATTGCGGCCACACTTTCAGCACTGCCAGTCATATCCG
TCCCGACCACAAAAGCACTTCATCATTTGCTTGCGGTCGATGTGCACGCT
CCTCGGCCTCAACCCCCCTTTCGCGCTTCGGTTAAAGATGGGTACGCAGT
TACTTTGCCGCTCGCCGAGCCTCTGAAAGTGTCGGCCTCATCGCACGCGG
GATCCAACACCTGTGTGAGCATCTCTGCGGGGTTGGCAGCCTACGTCACC
ACTGGCGCGCCAGTCCCCGAAGGCGCACACGCTGTTGTCATGGTAGAGAA
CTGTATGCGTGAAGGAGATGCACTTTCATTTGCGAAAGGGCTGGACGTAA
CGCAGGGGCAAGACATTCGCGAGATCGGGTGTGATGTGGCAGCGGGTGAA
CTCGTGCTCGCAGCGGGCACGTATCTCGGAGCGGCTGAGATCGGCATTCT
TGCCAGCTGTGCATGCGCATCCATTCAAGTTTATGATCGCCCGGTTATTG
GGGTGTTTTCAAGCGGGGATGAGATTCTTGACGTCAACAAGCTCCCACAA
GAAATGCCTTACGGTTCTATAATCGACTCAAATCGACCCATGCTTCTCGC
GTGCATCCAGGAAGCGCTTCCTTTCTGTACCGCACTTGACCTTGGTGTGG
TGCCAGACAGTGAATCGGTTGTGACAGAAGCGCTTCGAGATGCAACAAGA
AGGTGCCACATTGTCATTACTACCGGCGGGGTGTCCATGGGAAGACGAGA
CTACATAAAACCGGTTTTGGAAAAGATAGCCACCGTACATTTTGGCCGCG
TGTTGATGAAGCCCGGCAAACCGCTCACGTACGCAACAACGTCTGAGCAC
AACTGTTTTGTCGCATTACCTGGCAATCCCGTAAGTTGCTTTGTGTGTTT
TCACCTGGCAGTGGCAGTGGCAGCAAGGAAACTTGCTGGCTGGAGCGGTG
AGCGTGTGATGGGGATGCGAGTGGACGTCTCTCTTGCACACCCTGTGAGA
CTCGATAAGCAAAGGCCAGAGTATCATCGGGCCACTTTGCAGGTATGTCA
CATTCTATTTGGAACGCATAGCAATGCGCTGCGCATGGAAGCTGCGAGAC
GAACTGACGCCTTTCCTTGTCAAAATCAGTACGTCCCCGAACAAGGGTAC
GTTGGTACATCAACAGGGAAGCAGGCCAGCTCGAGATTGTTATCGACAAG
GTCGGCCGATGCGCTTTTGATGCTGCCGAAGGGCGACGGTTCACTTCCGG
CTGGGGCCAAAGTAAAGGCGCAGCTTCTCCCGCACTACATTTTTTCTTGT
TAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:1578617..1579969+

>Gvermi8210.t1 ID=Gvermi8210.t1|Name=Gvermi8210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1266bp|location=Sequence derived from alignment at ScGOVlb_24226:1578617..1579969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCTCTCCAGAACGCTCGATGTATCCCCTCGTTCCAATGCATGA
GGCGTTGGAAAAGATTGCGGCCACACTTTCAGCACTGCCAGTCATATCCG
TCCCGACCACAAAAGCACTTCATCATTTGCTTGCGGTCGATGTGCACGCT
CCTCGGCCTCAACCCCCCTTTCGCGCTTCGGTTAAAGATGGGTACGCAGT
TACTTTGCCGCTCGCCGAGCCTCTGAAAGTGTCGGCCTCATCGCACGCGG
GATCCAACACCTGTGTGAGCATCTCTGCGGGGTTGGCAGCCTACGTCACC
ACTGGCGCGCCAGTCCCCGAAGGCGCACACGCTGTTGTCATGGTAGAGAA
CTGTATGCGTGAAGGAGATGCACTTTCATTTGCGAAAGGGCTGGACGTAA
CGCAGGGGCAAGACATTCGCGAGATCGGGTGTGATGTGGCAGCGGGTGAA
CTCGTGCTCGCAGCGGGCACGTATCTCGGAGCGGCTGAGATCGGCATTCT
TGCCAGCTGTGCATGCGCATCCATTCAAGTTTATGATCGCCCGGTTATTG
GGGTGTTTTCAAGCGGGGATGAGATTCTTGACGTCAACAAGCTCCCACAA
GAAATGCCTTACGGTTCTATAATCGACTCAAATCGACCCATGCTTCTCGC
GTGCATCCAGGAAGCGCTTCCTTTCTGTACCGCACTTGACCTTGGTGTGG
TGCCAGACAGTGAATCGGTTGTGACAGAAGCGCTTCGAGATGCAACAAGA
AGGTGCCACATTGTCATTACTACCGGCGGGGTGTCCATGGGAAGACGAGA
CTACATAAAACCGGTTTTGGAAAAGATAGCCACCGTACATTTTGGCCGCG
TGTTGATGAAGCCCGGCAAACCGCTCACGTACGCAACAACGTCTGAGCAC
AACTGTTTTGTCGCATTACCTGGCAATCCCGTAAGTTGCTTTGTGTGTTT
TCACCTGGCAGTGGCAGTGGCAGCAAGGAAACTTGCTGGCTGGAGCGGTG
AGCGTGTGATGGGGATGCGAGTGGACGTCTCTCTTGCACACCCTGTGAGA
CTCGATAAGCAAAGGCCAGAGTATCATCGGGCCACTTTGCAGTACGTCCC
CGAACAAGGGTACGTTGGTACATCAACAGGGAAGCAGGCCAGCTCGAGAT
TGTTATCGACAAGGTCGGCCGATGCGCTTTTGATGCTGCCGAAGGGCGAC
GGTTCACTTCCGGCTGGGGCCAAAGTAAAGGCGCAGCTTCTCCCGCACTA
CATTTTTTCTTGTTAG
back to top