Gvermi8140.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8140.t1
Unique Name	Gvermi8140.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:1212996..1214639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8090.ENSORLP00000015604
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K02295
KEGG Pathway	ko04710,map04710
GOs	GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0016829,GO:0016830,GO:0140097
Evalue	5.66e-145
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota,38BKX@33154\|Opisthokonta,3B995@33208\|Metazoa,3CXCK@33213\|Bilateria,48BKK@7711\|Chordata,499WT@7742\|Vertebrata,4A0N0@7898\|Actinopterygii
Description	Cryptochrome 5
COG category	LT
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8140	Gvermi8140	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 1212996..1214639 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8140.t1.start1	Gvermi8140.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 1212996..1212998 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8140.t1.CDS1	Gvermi8140.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 1212996..1214639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8140.t1.exon1	Gvermi8140.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 1212996..1214639 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8140.t1.stop1	Gvermi8140.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 1214637..1214639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8140.t1	Gvermi8140.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 1212996..1214639 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:1212996..1214639+
coding sequence from alignment at ScGOVlb_24226:1212996..1214639+

mRNA sequence

>Gvermi8140.t1 ID=Gvermi8140.t1|Name=Gvermi8140.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=548bp
MKNAISFATVSGSVLHWFRRDLRLADNLALNAAVRLAREKETPLIPLYVV
DPALEPEKCSVARMRFLRESVCSLQSNLLEHGLHLRVVVGHANKVLPELA
QRWSAKNVFWEREYAPQPRRRDDSISSELKSLDIQVHTFDGFLLYDPDQL
LRHCDGCAPRNMNGMLNLVDSVGDPEKPKNFADGKTVSFEKDPYFTGDKD
ENMMSFPSLVDLGYEDVENKWTVFRGGEDEGLKRMDDFLRLKNGRTAADF
SKPKTSPATFSTRETTVLSPYFALGCVSCRSFYARLREIEQRYKLNEMRQ
TTLLGQLIWREHFWLLAYTIEHFHQMRGNSVCRQINWRNEKESSKFLECW
AEARTGFPWIDALMTQLRNEGFIHHLGRHSLACFLTRGDLWVSWEEGFKV
FEKYLLDYDYALNSANWMWLSCSAFFVMYYRVYSPVAFGKKWDKDGEFIR
HYLPVLKKMPSKYIYEPWKAPEAVQKKAGCIIGKDYPKPIVDHAKVSKEN
IEKMKKEYAKKEFGKLEQVSGEPLKNENDGPNSEGSVDSPRKKRRRL*

spliced messenger RNA

>Gvermi8140.t1 ID=Gvermi8140.t1|Name=Gvermi8140.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at ScGOVlb_24226:1212996..1214639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACGCTATTTCGTTTGCGACAGTGTCCGGCTCAGTCCTGCACTG
GTTTCGACGGGATCTCCGCCTCGCAGACAATCTCGCCTTAAATGCTGCAG
TCAGACTGGCGAGGGAAAAAGAGACCCCGCTCATCCCCCTCTATGTCGTG
GACCCCGCGCTGGAACCGGAAAAATGCAGTGTAGCTCGCATGCGATTTCT
GCGGGAATCGGTCTGTAGCCTGCAATCAAACTTACTTGAACACGGTCTTC
ATCTCAGAGTGGTGGTTGGCCATGCCAACAAGGTTCTGCCGGAGCTGGCT
CAACGATGGAGTGCCAAGAATGTTTTCTGGGAAAGAGAATATGCCCCTCA
ACCTCGAAGGCGAGATGATTCAATAAGTTCTGAACTGAAATCGCTTGACA
TCCAGGTGCATACCTTTGATGGCTTTCTGCTGTACGACCCTGATCAACTT
CTTCGACACTGTGATGGATGCGCCCCGCGAAATATGAACGGTATGTTGAA
TCTTGTTGATAGTGTTGGGGACCCGGAAAAGCCAAAGAACTTTGCGGACG
GGAAGACGGTTAGCTTTGAGAAAGACCCCTATTTTACTGGAGACAAAGAT
GAAAATATGATGAGCTTTCCATCTCTCGTCGACCTTGGATACGAAGATGT
AGAAAACAAGTGGACGGTTTTCAGAGGGGGTGAGGATGAAGGGTTGAAAC
GAATGGATGATTTCTTGCGGCTGAAGAACGGTCGCACCGCTGCTGACTTT
TCGAAACCCAAGACTAGTCCAGCCACTTTTTCCACTCGAGAGACCACGGT
TTTGTCGCCATATTTTGCGCTTGGATGTGTCAGTTGTCGCTCGTTTTACG
CAAGACTTCGCGAAATTGAGCAGCGTTACAAACTCAATGAAATGCGTCAA
ACCACATTGTTGGGCCAGCTCATCTGGCGTGAACACTTTTGGCTGTTGGC
ATACACGATTGAACATTTTCATCAAATGCGAGGCAACAGTGTTTGCAGGC
AGATTAATTGGCGCAACGAAAAAGAATCATCCAAGTTTCTCGAATGCTGG
GCTGAGGCTCGAACCGGCTTCCCTTGGATCGACGCCTTGATGACTCAACT
GCGGAACGAAGGTTTTATTCATCATCTAGGAAGGCATAGTTTGGCCTGTT
TCTTAACAAGAGGCGATCTATGGGTAAGCTGGGAAGAGGGTTTCAAGGTA
TTCGAGAAGTATCTCCTAGATTACGACTACGCCTTGAATTCTGCGAACTG
GATGTGGCTCAGCTGTAGCGCTTTTTTTGTCATGTATTATCGCGTGTATT
CCCCGGTTGCATTTGGCAAAAAATGGGACAAAGACGGAGAGTTCATTCGA
CATTACCTCCCCGTACTAAAAAAGATGCCATCCAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCCGTTCAGAAGAAGGCCGGGTGTATCATCGGTA
AGGATTACCCGAAGCCAATTGTCGACCACGCTAAGGTAAGTAAAGAAAAC
ATAGAAAAAATGAAGAAAGAATATGCGAAGAAAGAGTTTGGAAAACTGGA
ACAAGTGAGTGGAGAACCTCTGAAAAACGAGAATGATGGTCCTAACTCTG
AAGGAAGTGTAGACTCTCCCCGGAAAAAGAGAAGGCGACTCTGA

protein sequence of Gvermi8140.t1

>Gvermi8140.t1 ID=Gvermi8140.t1|Name=Gvermi8140.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=548bp
MKNAISFATVSGSVLHWFRRDLRLADNLALNAAVRLAREKETPLIPLYVV
DPALEPEKCSVARMRFLRESVCSLQSNLLEHGLHLRVVVGHANKVLPELA
QRWSAKNVFWEREYAPQPRRRDDSISSELKSLDIQVHTFDGFLLYDPDQL
LRHCDGCAPRNMNGMLNLVDSVGDPEKPKNFADGKTVSFEKDPYFTGDKD
ENMMSFPSLVDLGYEDVENKWTVFRGGEDEGLKRMDDFLRLKNGRTAADF
SKPKTSPATFSTRETTVLSPYFALGCVSCRSFYARLREIEQRYKLNEMRQ
TTLLGQLIWREHFWLLAYTIEHFHQMRGNSVCRQINWRNEKESSKFLECW
AEARTGFPWIDALMTQLRNEGFIHHLGRHSLACFLTRGDLWVSWEEGFKV
FEKYLLDYDYALNSANWMWLSCSAFFVMYYRVYSPVAFGKKWDKDGEFIR
HYLPVLKKMPSKYIYEPWKAPEAVQKKAGCIIGKDYPKPIVDHAKVSKEN
IEKMKKEYAKKEFGKLEQVSGEPLKNENDGPNSEGSVDSPRKKRRRL*

mRNA from alignment at ScGOVlb_24226:1212996..1214639+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8140.t1 ID=Gvermi8140.t1|Name=Gvermi8140.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at ScGOVlb_24226:1212996..1214639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAACGCTATTTCGTTTGCGACAGTGTCCGGCTCAGTCCTGCACTG
GTTTCGACGGGATCTCCGCCTCGCAGACAATCTCGCCTTAAATGCTGCAG
TCAGACTGGCGAGGGAAAAAGAGACCCCGCTCATCCCCCTCTATGTCGTG
GACCCCGCGCTGGAACCGGAAAAATGCAGTGTAGCTCGCATGCGATTTCT
GCGGGAATCGGTCTGTAGCCTGCAATCAAACTTACTTGAACACGGTCTTC
ATCTCAGAGTGGTGGTTGGCCATGCCAACAAGGTTCTGCCGGAGCTGGCT
CAACGATGGAGTGCCAAGAATGTTTTCTGGGAAAGAGAATATGCCCCTCA
ACCTCGAAGGCGAGATGATTCAATAAGTTCTGAACTGAAATCGCTTGACA
TCCAGGTGCATACCTTTGATGGCTTTCTGCTGTACGACCCTGATCAACTT
CTTCGACACTGTGATGGATGCGCCCCGCGAAATATGAACGGTATGTTGAA
TCTTGTTGATAGTGTTGGGGACCCGGAAAAGCCAAAGAACTTTGCGGACG
GGAAGACGGTTAGCTTTGAGAAAGACCCCTATTTTACTGGAGACAAAGAT
GAAAATATGATGAGCTTTCCATCTCTCGTCGACCTTGGATACGAAGATGT
AGAAAACAAGTGGACGGTTTTCAGAGGGGGTGAGGATGAAGGGTTGAAAC
GAATGGATGATTTCTTGCGGCTGAAGAACGGTCGCACCGCTGCTGACTTT
TCGAAACCCAAGACTAGTCCAGCCACTTTTTCCACTCGAGAGACCACGGT
TTTGTCGCCATATTTTGCGCTTGGATGTGTCAGTTGTCGCTCGTTTTACG
CAAGACTTCGCGAAATTGAGCAGCGTTACAAACTCAATGAAATGCGTCAA
ACCACATTGTTGGGCCAGCTCATCTGGCGTGAACACTTTTGGCTGTTGGC
ATACACGATTGAACATTTTCATCAAATGCGAGGCAACAGTGTTTGCAGGC
AGATTAATTGGCGCAACGAAAAAGAATCATCCAAGTTTCTCGAATGCTGG
GCTGAGGCTCGAACCGGCTTCCCTTGGATCGACGCCTTGATGACTCAACT
GCGGAACGAAGGTTTTATTCATCATCTAGGAAGGCATAGTTTGGCCTGTT
TCTTAACAAGAGGCGATCTATGGGTAAGCTGGGAAGAGGGTTTCAAGGTA
TTCGAGAAGTATCTCCTAGATTACGACTACGCCTTGAATTCTGCGAACTG
GATGTGGCTCAGCTGTAGCGCTTTTTTTGTCATGTATTATCGCGTGTATT
CCCCGGTTGCATTTGGCAAAAAATGGGACAAAGACGGAGAGTTCATTCGA
CATTACCTCCCCGTACTAAAAAAGATGCCATCCAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCCGTTCAGAAGAAGGCCGGGTGTATCATCGGTA
AGGATTACCCGAAGCCAATTGTCGACCACGCTAAGGTAAGTAAAGAAAAC
ATAGAAAAAATGAAGAAAGAATATGCGAAGAAAGAGTTTGGAAAACTGGA
ACAAGTGAGTGGAGAACCTCTGAAAAACGAGAATGATGGTCCTAACTCTG
AAGGAAGTGTAGACTCTCCCCGGAAAAAGAGAAGGCGACTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:1212996..1214639+

>Gvermi8140.t1 ID=Gvermi8140.t1|Name=Gvermi8140.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1644bp|location=Sequence derived from alignment at ScGOVlb_24226:1212996..1214639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAACGCTATTTCGTTTGCGACAGTGTCCGGCTCAGTCCTGCACTG
GTTTCGACGGGATCTCCGCCTCGCAGACAATCTCGCCTTAAATGCTGCAG
TCAGACTGGCGAGGGAAAAAGAGACCCCGCTCATCCCCCTCTATGTCGTG
GACCCCGCGCTGGAACCGGAAAAATGCAGTGTAGCTCGCATGCGATTTCT
GCGGGAATCGGTCTGTAGCCTGCAATCAAACTTACTTGAACACGGTCTTC
ATCTCAGAGTGGTGGTTGGCCATGCCAACAAGGTTCTGCCGGAGCTGGCT
CAACGATGGAGTGCCAAGAATGTTTTCTGGGAAAGAGAATATGCCCCTCA
ACCTCGAAGGCGAGATGATTCAATAAGTTCTGAACTGAAATCGCTTGACA
TCCAGGTGCATACCTTTGATGGCTTTCTGCTGTACGACCCTGATCAACTT
CTTCGACACTGTGATGGATGCGCCCCGCGAAATATGAACGGTATGTTGAA
TCTTGTTGATAGTGTTGGGGACCCGGAAAAGCCAAAGAACTTTGCGGACG
GGAAGACGGTTAGCTTTGAGAAAGACCCCTATTTTACTGGAGACAAAGAT
GAAAATATGATGAGCTTTCCATCTCTCGTCGACCTTGGATACGAAGATGT
AGAAAACAAGTGGACGGTTTTCAGAGGGGGTGAGGATGAAGGGTTGAAAC
GAATGGATGATTTCTTGCGGCTGAAGAACGGTCGCACCGCTGCTGACTTT
TCGAAACCCAAGACTAGTCCAGCCACTTTTTCCACTCGAGAGACCACGGT
TTTGTCGCCATATTTTGCGCTTGGATGTGTCAGTTGTCGCTCGTTTTACG
CAAGACTTCGCGAAATTGAGCAGCGTTACAAACTCAATGAAATGCGTCAA
ACCACATTGTTGGGCCAGCTCATCTGGCGTGAACACTTTTGGCTGTTGGC
ATACACGATTGAACATTTTCATCAAATGCGAGGCAACAGTGTTTGCAGGC
AGATTAATTGGCGCAACGAAAAAGAATCATCCAAGTTTCTCGAATGCTGG
GCTGAGGCTCGAACCGGCTTCCCTTGGATCGACGCCTTGATGACTCAACT
GCGGAACGAAGGTTTTATTCATCATCTAGGAAGGCATAGTTTGGCCTGTT
TCTTAACAAGAGGCGATCTATGGGTAAGCTGGGAAGAGGGTTTCAAGGTA
TTCGAGAAGTATCTCCTAGATTACGACTACGCCTTGAATTCTGCGAACTG
GATGTGGCTCAGCTGTAGCGCTTTTTTTGTCATGTATTATCGCGTGTATT
CCCCGGTTGCATTTGGCAAAAAATGGGACAAAGACGGAGAGTTCATTCGA
CATTACCTCCCCGTACTAAAAAAGATGCCATCCAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCCGTTCAGAAGAAGGCCGGGTGTATCATCGGTA
AGGATTACCCGAAGCCAATTGTCGACCACGCTAAGGTAAGTAAAGAAAAC
ATAGAAAAAATGAAGAAAGAATATGCGAAGAAAGAGTTTGGAAAACTGGA
ACAAGTGAGTGGAGAACCTCTGAAAAACGAGAATGATGGTCCTAACTCTG
AAGGAAGTGTAGACTCTCCCCGGAAAAAGAGAAGGCGACTCTGA