Gvermi8089.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8089.t1
Unique NameGvermi8089.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:966502..967578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9818.XP_007951146.1
Preferred nameF12
PFAMsEGF,Kringle,Trypsin,fn1,fn2
Max annot lvl33208|Metazoa
KEGG koko:K01328,ko:K01343,ko:K09631
KEGG Pathwayko04371,ko04610,ko05202,ko05215,ko05418,map04371,map04610,map05202,map05215,map05418
GOsGO:0002254,GO:0002353,GO:0002376,GO:0002526,GO:0002542,GO:0002673,GO:0002675,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007596,GO:0007597,GO:0007599,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009611,GO:0009893,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0030162,GO:0030193,GO:0030194,GO:0030195,GO:0031323,GO:0031325,GO:0031347,GO:0031349,GO:0031638,GO:0032101,GO:0032102,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0035966,GO:0042060,GO:0042221,GO:0043170,GO:0044238,GO:0044421,GO:0044464,GO:0045087,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048585,GO:0050727,GO:0050729,GO:0050789,GO:0050794,GO:0050817,GO:0050818,GO:0050819,GO:0050820,GO:0050878,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051604,GO:0051787,GO:0051788,GO:0051917,GO:0051919,GO:0060255,GO:0061041,GO:0061045,GO:0065007,GO:0065008,GO:0070011,GO:0070613,GO:0071704,GO:0071944,GO:0072376,GO:0072378,GO:0080090,GO:0080134,GO:0090303,GO:0140096,GO:1900046,GO:1900047,GO:1900048,GO:1901564,GO:1903034,GO:1903035,GO:1903036,GO:1903317,GO:1903319
Evalue1.27e-18
EggNOG OGsCOG5640@1|root,KOG1217@1|root,KOG1217@2759|Eukaryota,KOG3627@2759|Eukaryota,38FMZ@33154|Opisthokonta,3BH2M@33208|Metazoa,3D2G7@33213|Bilateria,488VG@7711|Chordata,48VN1@7742|Vertebrata,3J9F1@40674|Mammalia,34Z7Y@311790|Afrotheria
EC3.4.21.38,3.4.21.68
DescriptionCoagulation factor XII
COG categoryT
BRITEko00000,ko00001,ko00536,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8089Gvermi8089Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 966502..967578 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8089.t1.stop1Gvermi8089.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 966502..966504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8089.t1.CDS1Gvermi8089.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 966502..967578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8089.t1.exon1Gvermi8089.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 966502..967578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8089.t1.start1Gvermi8089.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 967576..967578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8089.t1Gvermi8089.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 966502..967578 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8089.t1 ID=Gvermi8089.t1|Name=Gvermi8089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=359bp
MVVHRSAVFAAAVCTAWLLALSQGAVVANSSGASSLDNASSRVIHGEAVT
DKSEYPFVVDLSRHDVAISSTRFCTGTLVAADLVLTAAHCVLNDGADAPT
FATVGRIELEDGHSRNEHAQTFRAVASIAHAAYGGLGSPHDVALVLLNAS
SSAPTVKLADSSPQKDDVAWVVGYGIQMLGTVEASAQRVEVLSGRLQKTA
LRVQDKSFCDGPEGQWKTADGMICTAGVTEGASACRGDSGGGLFVQQQVS
DTGREAVQVGVVSYGDAQCASEESGVFTDVANNLEWIRASAERLQALSQG
GERAQQPQAAALDGGSTANDAPLRRGTDAQGGAEQGSERKFAPFSTSQPV
SAPSAQRE*
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spliced messenger RNA

>Gvermi8089.t1 ID=Gvermi8089.t1|Name=Gvermi8089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24226:966502..967578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGCATCGCTCAGCCGTTTTCGCAGCTGCTGTGTGCACGGCATG
GCTGCTCGCGCTGTCGCAGGGCGCGGTTGTGGCCAACAGCAGCGGCGCGT
CAAGCCTGGACAACGCCTCGTCGAGAGTGATCCACGGAGAGGCGGTGACC
GACAAGAGCGAGTACCCGTTCGTGGTGGACCTGTCGCGGCACGACGTGGC
CATCTCGTCGACGCGCTTCTGCACGGGCACGCTGGTGGCGGCGGACCTGG
TGCTGACGGCGGCGCACTGCGTGCTCAACGACGGGGCCGACGCGCCGACG
TTCGCCACGGTGGGGCGCATCGAGCTGGAGGACGGCCACTCGCGCAACGA
GCACGCGCAGACGTTCCGCGCCGTCGCCAGCATTGCGCACGCGGCGTACG
GCGGGCTGGGCTCGCCGCACGACGTGGCGCTGGTGCTGCTCAACGCGTCG
AGCTCCGCGCCGACGGTGAAGCTGGCCGACTCGAGCCCCCAGAAGGACGA
CGTGGCGTGGGTGGTCGGCTACGGCATCCAGATGCTGGGCACGGTTGAAG
CGTCGGCGCAGCGCGTGGAGGTGCTTTCCGGGCGGCTGCAGAAGACGGCG
CTGCGCGTGCAGGACAAGTCGTTCTGCGACGGGCCCGAGGGCCAGTGGAA
GACGGCCGACGGGATGATCTGCACGGCCGGGGTGACGGAGGGCGCGTCGG
CGTGCCGCGGGGACTCGGGCGGCGGGCTGTTCGTGCAGCAGCAGGTGTCG
GACACGGGGCGCGAGGCGGTGCAGGTGGGCGTGGTGAGCTACGGCGACGC
GCAGTGCGCGTCGGAGGAGTCGGGCGTGTTCACCGATGTGGCGAACAACC
TGGAGTGGATCCGGGCGTCGGCGGAGAGGCTGCAGGCGTTGTCGCAGGGG
GGGGAGCGCGCGCAGCAGCCGCAGGCTGCGGCGCTGGACGGAGGCAGCAC
GGCGAACGATGCGCCGCTGCGGCGGGGGACGGATGCGCAGGGCGGCGCCG
AGCAGGGCAGTGAGCGAAAGTTCGCGCCGTTTTCGACGTCGCAACCCGTG
AGCGCACCGAGCGCGCAACGGGAGTAG
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protein sequence of Gvermi8089.t1

>Gvermi8089.t1 ID=Gvermi8089.t1|Name=Gvermi8089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=359bp
MVVHRSAVFAAAVCTAWLLALSQGAVVANSSGASSLDNASSRVIHGEAVT
DKSEYPFVVDLSRHDVAISSTRFCTGTLVAADLVLTAAHCVLNDGADAPT
FATVGRIELEDGHSRNEHAQTFRAVASIAHAAYGGLGSPHDVALVLLNAS
SSAPTVKLADSSPQKDDVAWVVGYGIQMLGTVEASAQRVEVLSGRLQKTA
LRVQDKSFCDGPEGQWKTADGMICTAGVTEGASACRGDSGGGLFVQQQVS
DTGREAVQVGVVSYGDAQCASEESGVFTDVANNLEWIRASAERLQALSQG
GERAQQPQAAALDGGSTANDAPLRRGTDAQGGAEQGSERKFAPFSTSQPV
SAPSAQRE*
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mRNA from alignment at ScGOVlb_24226:966502..967578-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8089.t1 ID=Gvermi8089.t1|Name=Gvermi8089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24226:966502..967578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGTGCATCGCTCAGCCGTTTTCGCAGCTGCTGTGTGCACGGCATG
GCTGCTCGCGCTGTCGCAGGGCGCGGTTGTGGCCAACAGCAGCGGCGCGT
CAAGCCTGGACAACGCCTCGTCGAGAGTGATCCACGGAGAGGCGGTGACC
GACAAGAGCGAGTACCCGTTCGTGGTGGACCTGTCGCGGCACGACGTGGC
CATCTCGTCGACGCGCTTCTGCACGGGCACGCTGGTGGCGGCGGACCTGG
TGCTGACGGCGGCGCACTGCGTGCTCAACGACGGGGCCGACGCGCCGACG
TTCGCCACGGTGGGGCGCATCGAGCTGGAGGACGGCCACTCGCGCAACGA
GCACGCGCAGACGTTCCGCGCCGTCGCCAGCATTGCGCACGCGGCGTACG
GCGGGCTGGGCTCGCCGCACGACGTGGCGCTGGTGCTGCTCAACGCGTCG
AGCTCCGCGCCGACGGTGAAGCTGGCCGACTCGAGCCCCCAGAAGGACGA
CGTGGCGTGGGTGGTCGGCTACGGCATCCAGATGCTGGGCACGGTTGAAG
CGTCGGCGCAGCGCGTGGAGGTGCTTTCCGGGCGGCTGCAGAAGACGGCG
CTGCGCGTGCAGGACAAGTCGTTCTGCGACGGGCCCGAGGGCCAGTGGAA
GACGGCCGACGGGATGATCTGCACGGCCGGGGTGACGGAGGGCGCGTCGG
CGTGCCGCGGGGACTCGGGCGGCGGGCTGTTCGTGCAGCAGCAGGTGTCG
GACACGGGGCGCGAGGCGGTGCAGGTGGGCGTGGTGAGCTACGGCGACGC
GCAGTGCGCGTCGGAGGAGTCGGGCGTGTTCACCGATGTGGCGAACAACC
TGGAGTGGATCCGGGCGTCGGCGGAGAGGCTGCAGGCGTTGTCGCAGGGG
GGGGAGCGCGCGCAGCAGCCGCAGGCTGCGGCGCTGGACGGAGGCAGCAC
GGCGAACGATGCGCCGCTGCGGCGGGGGACGGATGCGCAGGGCGGCGCCG
AGCAGGGCAGTGAGCGAAAGTTCGCGCCGTTTTCGACGTCGCAACCCGTG
AGCGCACCGAGCGCGCAACGGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:966502..967578-

>Gvermi8089.t1 ID=Gvermi8089.t1|Name=Gvermi8089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24226:966502..967578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGTGCATCGCTCAGCCGTTTTCGCAGCTGCTGTGTGCACGGCATG
GCTGCTCGCGCTGTCGCAGGGCGCGGTTGTGGCCAACAGCAGCGGCGCGT
CAAGCCTGGACAACGCCTCGTCGAGAGTGATCCACGGAGAGGCGGTGACC
GACAAGAGCGAGTACCCGTTCGTGGTGGACCTGTCGCGGCACGACGTGGC
CATCTCGTCGACGCGCTTCTGCACGGGCACGCTGGTGGCGGCGGACCTGG
TGCTGACGGCGGCGCACTGCGTGCTCAACGACGGGGCCGACGCGCCGACG
TTCGCCACGGTGGGGCGCATCGAGCTGGAGGACGGCCACTCGCGCAACGA
GCACGCGCAGACGTTCCGCGCCGTCGCCAGCATTGCGCACGCGGCGTACG
GCGGGCTGGGCTCGCCGCACGACGTGGCGCTGGTGCTGCTCAACGCGTCG
AGCTCCGCGCCGACGGTGAAGCTGGCCGACTCGAGCCCCCAGAAGGACGA
CGTGGCGTGGGTGGTCGGCTACGGCATCCAGATGCTGGGCACGGTTGAAG
CGTCGGCGCAGCGCGTGGAGGTGCTTTCCGGGCGGCTGCAGAAGACGGCG
CTGCGCGTGCAGGACAAGTCGTTCTGCGACGGGCCCGAGGGCCAGTGGAA
GACGGCCGACGGGATGATCTGCACGGCCGGGGTGACGGAGGGCGCGTCGG
CGTGCCGCGGGGACTCGGGCGGCGGGCTGTTCGTGCAGCAGCAGGTGTCG
GACACGGGGCGCGAGGCGGTGCAGGTGGGCGTGGTGAGCTACGGCGACGC
GCAGTGCGCGTCGGAGGAGTCGGGCGTGTTCACCGATGTGGCGAACAACC
TGGAGTGGATCCGGGCGTCGGCGGAGAGGCTGCAGGCGTTGTCGCAGGGG
GGGGAGCGCGCGCAGCAGCCGCAGGCTGCGGCGCTGGACGGAGGCAGCAC
GGCGAACGATGCGCCGCTGCGGCGGGGGACGGATGCGCAGGGCGGCGCCG
AGCAGGGCAGTGAGCGAAAGTTCGCGCCGTTTTCGACGTCGCAACCCGTG
AGCGCACCGAGCGCGCAACGGGAGTAG
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