Gvermi8046.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8046.t1
Unique NameGvermi8046.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:860175..861695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8046Gvermi8046Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 860175..861695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8046.t1.start1Gvermi8046.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 860175..860177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8046.t1.CDS1Gvermi8046.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 860175..861695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8046.t1.exon1Gvermi8046.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 860175..861695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8046.t1.stop1Gvermi8046.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 861693..861695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8046.t1Gvermi8046.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 860175..861695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8046.t1 ID=Gvermi8046.t1|Name=Gvermi8046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MAIELDFPLPIFNVLKYLIIFTFLDIFVRNNINFLVCAFRGFCLGNGHRV
PLSDLPIDRFNFFSLGQFKLSIYSVFLCAVVLFTYAVELSLEFSTGSIAK
TVSVPEIMKMRNASLDSCAILSLAGSQYILLMSRFAAECVVFPEDEIDNI
SDRRYKIYGSTWINELNATSPRCPRTDSNLIAEGTQIYGSRNIHEDRTTI
SRDIISFSDGEKVGARQNVIILRVDRSDLRSISVSEESSETYATGQLLIR
FQNSSITCRGDVHGRYGEKFMKVELYFCQGFSLTTEGEKDLLLLSGSALL
GIDAENMNSKWHVLVATSLGREIRSFSKDVVGFSESQSDSAFATFLAVSS
NRDDQSLQKFAAMYRHCGNIRLPHANDEWHEQLVTHASGQIVSRITVEYW
AIGLVMCWPVLLFILRIFVSFRCKSKNMPMNLFGEQDIGNLWYKAMNRND
AFQTYEKHEQNSRKTASCFTRCKTSLPANKVFLILERQENNDFITIMGTD
CITGGS*
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spliced messenger RNA

>Gvermi8046.t1 ID=Gvermi8046.t1|Name=Gvermi8046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:860175..861695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATTGAACTTGATTTTCCACTACCTATATTTAATGTCTTGAAATA
TCTAATTATCTTCACATTTCTTGACATCTTTGTCAGAAATAATATCAATT
TTCTTGTTTGTGCGTTTCGAGGATTCTGCCTCGGCAATGGGCATCGGGTT
CCACTCTCGGATCTCCCAATTGATCGATTCAATTTTTTCTCGCTAGGACA
ATTCAAGCTAAGTATCTATTCAGTCTTTCTTTGTGCTGTTGTGCTTTTCA
CATATGCTGTTGAACTTTCGTTGGAATTTTCAACGGGTTCTATTGCGAAG
ACCGTTAGTGTTCCAGAGATAATGAAAATGAGGAATGCATCTCTTGATTC
ATGTGCTATCCTGAGTCTTGCAGGGTCACAATACATTCTATTAATGAGTC
GCTTCGCAGCGGAATGTGTGGTATTTCCGGAAGACGAGATTGATAATATA
TCGGACAGAAGATATAAAATATACGGTTCGACTTGGATCAATGAGTTGAA
TGCTACCAGCCCACGATGCCCTCGTACCGACAGTAATTTGATTGCAGAAG
GAACGCAGATTTATGGCTCGAGAAACATTCATGAGGATCGAACAACGATT
TCAAGAGATATCATATCATTTTCTGATGGAGAAAAAGTTGGTGCGCGGCA
AAACGTTATCATTCTTAGAGTGGATAGGTCCGATCTAAGGAGTATATCAG
TCTCCGAAGAATCTTCGGAGACGTACGCAACTGGACAATTGCTCATTCGT
TTTCAAAATTCTTCGATAACATGTCGTGGGGACGTTCATGGTCGATACGG
AGAAAAATTCATGAAAGTCGAACTATATTTTTGTCAGGGCTTCAGTCTGA
CTACTGAAGGCGAAAAAGATCTACTGCTTTTGAGTGGATCTGCCTTGCTT
GGAATCGACGCCGAAAACATGAATTCAAAATGGCACGTTTTGGTTGCGAC
ATCTCTAGGGAGGGAGATTCGAAGTTTTTCGAAAGATGTTGTTGGGTTTT
CCGAATCTCAAAGCGATTCAGCCTTCGCTACATTTTTGGCAGTATCGTCT
AATCGAGATGACCAGTCATTGCAAAAATTTGCAGCCATGTACAGACATTG
TGGCAATATTCGCCTTCCACATGCGAACGATGAATGGCACGAGCAGTTGG
TAACTCATGCTAGTGGCCAAATTGTCTCACGCATAACCGTGGAATACTGG
GCCATTGGACTTGTTATGTGCTGGCCTGTTCTTTTATTCATATTGAGGAT
TTTCGTATCTTTTCGTTGCAAAAGCAAGAATATGCCGATGAATTTGTTTG
GAGAACAGGACATTGGCAATCTGTGGTACAAAGCGATGAATAGAAATGAT
GCGTTTCAGACCTATGAAAAACATGAACAAAATTCCCGAAAAACAGCATC
ATGTTTCACAAGATGCAAAACATCTCTACCTGCAAATAAAGTGTTCTTGA
TACTTGAGCGTCAGGAAAATAACGACTTTATCACAATCATGGGAACGGAT
TGTATCACAGGCGGAAGCTAA
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protein sequence of Gvermi8046.t1

>Gvermi8046.t1 ID=Gvermi8046.t1|Name=Gvermi8046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MAIELDFPLPIFNVLKYLIIFTFLDIFVRNNINFLVCAFRGFCLGNGHRV
PLSDLPIDRFNFFSLGQFKLSIYSVFLCAVVLFTYAVELSLEFSTGSIAK
TVSVPEIMKMRNASLDSCAILSLAGSQYILLMSRFAAECVVFPEDEIDNI
SDRRYKIYGSTWINELNATSPRCPRTDSNLIAEGTQIYGSRNIHEDRTTI
SRDIISFSDGEKVGARQNVIILRVDRSDLRSISVSEESSETYATGQLLIR
FQNSSITCRGDVHGRYGEKFMKVELYFCQGFSLTTEGEKDLLLLSGSALL
GIDAENMNSKWHVLVATSLGREIRSFSKDVVGFSESQSDSAFATFLAVSS
NRDDQSLQKFAAMYRHCGNIRLPHANDEWHEQLVTHASGQIVSRITVEYW
AIGLVMCWPVLLFILRIFVSFRCKSKNMPMNLFGEQDIGNLWYKAMNRND
AFQTYEKHEQNSRKTASCFTRCKTSLPANKVFLILERQENNDFITIMGTD
CITGGS*
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mRNA from alignment at ScGOVlb_24226:860175..861695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8046.t1 ID=Gvermi8046.t1|Name=Gvermi8046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:860175..861695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTATTGAACTTGATTTTCCACTACCTATATTTAATGTCTTGAAATA
TCTAATTATCTTCACATTTCTTGACATCTTTGTCAGAAATAATATCAATT
TTCTTGTTTGTGCGTTTCGAGGATTCTGCCTCGGCAATGGGCATCGGGTT
CCACTCTCGGATCTCCCAATTGATCGATTCAATTTTTTCTCGCTAGGACA
ATTCAAGCTAAGTATCTATTCAGTCTTTCTTTGTGCTGTTGTGCTTTTCA
CATATGCTGTTGAACTTTCGTTGGAATTTTCAACGGGTTCTATTGCGAAG
ACCGTTAGTGTTCCAGAGATAATGAAAATGAGGAATGCATCTCTTGATTC
ATGTGCTATCCTGAGTCTTGCAGGGTCACAATACATTCTATTAATGAGTC
GCTTCGCAGCGGAATGTGTGGTATTTCCGGAAGACGAGATTGATAATATA
TCGGACAGAAGATATAAAATATACGGTTCGACTTGGATCAATGAGTTGAA
TGCTACCAGCCCACGATGCCCTCGTACCGACAGTAATTTGATTGCAGAAG
GAACGCAGATTTATGGCTCGAGAAACATTCATGAGGATCGAACAACGATT
TCAAGAGATATCATATCATTTTCTGATGGAGAAAAAGTTGGTGCGCGGCA
AAACGTTATCATTCTTAGAGTGGATAGGTCCGATCTAAGGAGTATATCAG
TCTCCGAAGAATCTTCGGAGACGTACGCAACTGGACAATTGCTCATTCGT
TTTCAAAATTCTTCGATAACATGTCGTGGGGACGTTCATGGTCGATACGG
AGAAAAATTCATGAAAGTCGAACTATATTTTTGTCAGGGCTTCAGTCTGA
CTACTGAAGGCGAAAAAGATCTACTGCTTTTGAGTGGATCTGCCTTGCTT
GGAATCGACGCCGAAAACATGAATTCAAAATGGCACGTTTTGGTTGCGAC
ATCTCTAGGGAGGGAGATTCGAAGTTTTTCGAAAGATGTTGTTGGGTTTT
CCGAATCTCAAAGCGATTCAGCCTTCGCTACATTTTTGGCAGTATCGTCT
AATCGAGATGACCAGTCATTGCAAAAATTTGCAGCCATGTACAGACATTG
TGGCAATATTCGCCTTCCACATGCGAACGATGAATGGCACGAGCAGTTGG
TAACTCATGCTAGTGGCCAAATTGTCTCACGCATAACCGTGGAATACTGG
GCCATTGGACTTGTTATGTGCTGGCCTGTTCTTTTATTCATATTGAGGAT
TTTCGTATCTTTTCGTTGCAAAAGCAAGAATATGCCGATGAATTTGTTTG
GAGAACAGGACATTGGCAATCTGTGGTACAAAGCGATGAATAGAAATGAT
GCGTTTCAGACCTATGAAAAACATGAACAAAATTCCCGAAAAACAGCATC
ATGTTTCACAAGATGCAAAACATCTCTACCTGCAAATAAAGTGTTCTTGA
TACTTGAGCGTCAGGAAAATAACGACTTTATCACAATCATGGGAACGGAT
TGTATCACAGGCGGAAGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:860175..861695+

>Gvermi8046.t1 ID=Gvermi8046.t1|Name=Gvermi8046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:860175..861695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTATTGAACTTGATTTTCCACTACCTATATTTAATGTCTTGAAATA
TCTAATTATCTTCACATTTCTTGACATCTTTGTCAGAAATAATATCAATT
TTCTTGTTTGTGCGTTTCGAGGATTCTGCCTCGGCAATGGGCATCGGGTT
CCACTCTCGGATCTCCCAATTGATCGATTCAATTTTTTCTCGCTAGGACA
ATTCAAGCTAAGTATCTATTCAGTCTTTCTTTGTGCTGTTGTGCTTTTCA
CATATGCTGTTGAACTTTCGTTGGAATTTTCAACGGGTTCTATTGCGAAG
ACCGTTAGTGTTCCAGAGATAATGAAAATGAGGAATGCATCTCTTGATTC
ATGTGCTATCCTGAGTCTTGCAGGGTCACAATACATTCTATTAATGAGTC
GCTTCGCAGCGGAATGTGTGGTATTTCCGGAAGACGAGATTGATAATATA
TCGGACAGAAGATATAAAATATACGGTTCGACTTGGATCAATGAGTTGAA
TGCTACCAGCCCACGATGCCCTCGTACCGACAGTAATTTGATTGCAGAAG
GAACGCAGATTTATGGCTCGAGAAACATTCATGAGGATCGAACAACGATT
TCAAGAGATATCATATCATTTTCTGATGGAGAAAAAGTTGGTGCGCGGCA
AAACGTTATCATTCTTAGAGTGGATAGGTCCGATCTAAGGAGTATATCAG
TCTCCGAAGAATCTTCGGAGACGTACGCAACTGGACAATTGCTCATTCGT
TTTCAAAATTCTTCGATAACATGTCGTGGGGACGTTCATGGTCGATACGG
AGAAAAATTCATGAAAGTCGAACTATATTTTTGTCAGGGCTTCAGTCTGA
CTACTGAAGGCGAAAAAGATCTACTGCTTTTGAGTGGATCTGCCTTGCTT
GGAATCGACGCCGAAAACATGAATTCAAAATGGCACGTTTTGGTTGCGAC
ATCTCTAGGGAGGGAGATTCGAAGTTTTTCGAAAGATGTTGTTGGGTTTT
CCGAATCTCAAAGCGATTCAGCCTTCGCTACATTTTTGGCAGTATCGTCT
AATCGAGATGACCAGTCATTGCAAAAATTTGCAGCCATGTACAGACATTG
TGGCAATATTCGCCTTCCACATGCGAACGATGAATGGCACGAGCAGTTGG
TAACTCATGCTAGTGGCCAAATTGTCTCACGCATAACCGTGGAATACTGG
GCCATTGGACTTGTTATGTGCTGGCCTGTTCTTTTATTCATATTGAGGAT
TTTCGTATCTTTTCGTTGCAAAAGCAAGAATATGCCGATGAATTTGTTTG
GAGAACAGGACATTGGCAATCTGTGGTACAAAGCGATGAATAGAAATGAT
GCGTTTCAGACCTATGAAAAACATGAACAAAATTCCCGAAAAACAGCATC
ATGTTTCACAAGATGCAAAACATCTCTACCTGCAAATAAAGTGTTCTTGA
TACTTGAGCGTCAGGAAAATAACGACTTTATCACAATCATGGGAACGGAT
TGTATCACAGGCGGAAGCTAA
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