Gvermi8043.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8043.t1
Unique NameGvermi8043.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:794356..795051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_47521
Preferred nameRPF1
PFAMsBrix
Max annot lvl2759|Eukaryota
KEGG koko:K14846
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue4.2e-49
EggNOG OGsCOG2136@1|root,KOG2780@2759|Eukaryota
DescriptionrRNA primary transcript binding
COG categoryAJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8043Gvermi8043Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 794356..795051 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8043.t1.stop1Gvermi8043.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 794356..794358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8043.t1.CDS1Gvermi8043.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 794356..795051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8043.t1.exon1Gvermi8043.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 794356..795051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8043.t1.start1Gvermi8043.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 795049..795051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8043.t1Gvermi8043.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 794356..795051 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8043.t1 ID=Gvermi8043.t1|Name=Gvermi8043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=232bp
LTREQARAISDEFTPVLAGHARPRVVLTTAQRPTDAALNFIKELLPVVPR
AAYFARHRASVAAFCAAAAAKRATDVLIVAERAGAVHALTHVHLPAGPTA
VYALSSFTPARALPARGRPTAHHPPELIVSNFSTALGLRVARMLAALFPH
PPHFAARQAVTLRNQRDFIFFRFHRYVFAAARDSARLQELGPRFTLKLRA
LHRGLFHHPDRADHHFRWKPAAHVNRRRFFL*
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spliced messenger RNA

>Gvermi8043.t1 ID=Gvermi8043.t1|Name=Gvermi8043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_24226:794356..795051- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGACGCGCGAGCAGGCGCGCGCCATCAGCGACGAGTTCACGCCCGTGCT
GGCCGGTCACGCGCGCCCGCGCGTCGTGCTCACCACCGCGCAGCGCCCCA
CCGACGCCGCGCTCAACTTCATCAAGGAGCTGCTGCCCGTCGTGCCGCGC
GCCGCCTACTTTGCGCGCCACCGCGCCTCCGTGGCCGCCTTCTGCGCCGC
CGCCGCCGCCAAGCGCGCCACCGACGTGCTCATCGTCGCCGAGCGCGCCG
GCGCCGTGCACGCGCTCACGCACGTGCACCTGCCCGCGGGGCCCACCGCC
GTGTACGCGCTGTCCTCCTTCACGCCCGCGCGCGCGCTGCCCGCGCGCGG
CCGCCCCACCGCCCACCACCCCCCCGAGCTCATCGTCAGCAACTTCTCCA
CCGCCCTGGGGCTGCGCGTCGCGCGCATGCTGGCCGCCCTCTTCCCGCAC
CCGCCGCACTTTGCCGCGCGCCAGGCCGTCACGCTGCGCAACCAGCGCGA
CTTCATCTTCTTCCGCTTCCACCGCTACGTCTTCGCCGCCGCGCGCGACA
GCGCCCGCCTGCAGGAGCTCGGCCCGCGCTTCACCCTCAAGCTGCGCGCC
CTGCACCGCGGCCTCTTCCACCACCCCGACCGCGCCGACCACCACTTCCG
CTGGAAGCCCGCCGCCCACGTCAACCGCCGCCGCTTCTTTCTGTGA
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protein sequence of Gvermi8043.t1

>Gvermi8043.t1 ID=Gvermi8043.t1|Name=Gvermi8043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=232bp
LTREQARAISDEFTPVLAGHARPRVVLTTAQRPTDAALNFIKELLPVVPR
AAYFARHRASVAAFCAAAAAKRATDVLIVAERAGAVHALTHVHLPAGPTA
VYALSSFTPARALPARGRPTAHHPPELIVSNFSTALGLRVARMLAALFPH
PPHFAARQAVTLRNQRDFIFFRFHRYVFAAARDSARLQELGPRFTLKLRA
LHRGLFHHPDRADHHFRWKPAAHVNRRRFFL*
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mRNA from alignment at ScGOVlb_24226:794356..795051-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8043.t1 ID=Gvermi8043.t1|Name=Gvermi8043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_24226:794356..795051- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACGCGCGAGCAGGCGCGCGCCATCAGCGACGAGTTCACGCCCGTGCT
GGCCGGTCACGCGCGCCCGCGCGTCGTGCTCACCACCGCGCAGCGCCCCA
CCGACGCCGCGCTCAACTTCATCAAGGAGCTGCTGCCCGTCGTGCCGCGC
GCCGCCTACTTTGCGCGCCACCGCGCCTCCGTGGCCGCCTTCTGCGCCGC
CGCCGCCGCCAAGCGCGCCACCGACGTGCTCATCGTCGCCGAGCGCGCCG
GCGCCGTGCACGCGCTCACGCACGTGCACCTGCCCGCGGGGCCCACCGCC
GTGTACGCGCTGTCCTCCTTCACGCCCGCGCGCGCGCTGCCCGCGCGCGG
CCGCCCCACCGCCCACCACCCCCCCGAGCTCATCGTCAGCAACTTCTCCA
CCGCCCTGGGGCTGCGCGTCGCGCGCATGCTGGCCGCCCTCTTCCCGCAC
CCGCCGCACTTTGCCGCGCGCCAGGCCGTCACGCTGCGCAACCAGCGCGA
CTTCATCTTCTTCCGCTTCCACCGCTACGTCTTCGCCGCCGCGCGCGACA
GCGCCCGCCTGCAGGAGCTCGGCCCGCGCTTCACCCTCAAGCTGCGCGCC
CTGCACCGCGGCCTCTTCCACCACCCCGACCGCGCCGACCACCACTTCCG
CTGGAAGCCCGCCGCCCACGTCAACCGCCGCCGCTTCTTTCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:794356..795051-

>Gvermi8043.t1 ID=Gvermi8043.t1|Name=Gvermi8043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=696bp|location=Sequence derived from alignment at ScGOVlb_24226:794356..795051- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACGCGCGAGCAGGCGCGCGCCATCAGCGACGAGTTCACGCCCGTGCT
GGCCGGTCACGCGCGCCCGCGCGTCGTGCTCACCACCGCGCAGCGCCCCA
CCGACGCCGCGCTCAACTTCATCAAGGAGCTGCTGCCCGTCGTGCCGCGC
GCCGCCTACTTTGCGCGCCACCGCGCCTCCGTGGCCGCCTTCTGCGCCGC
CGCCGCCGCCAAGCGCGCCACCGACGTGCTCATCGTCGCCGAGCGCGCCG
GCGCCGTGCACGCGCTCACGCACGTGCACCTGCCCGCGGGGCCCACCGCC
GTGTACGCGCTGTCCTCCTTCACGCCCGCGCGCGCGCTGCCCGCGCGCGG
CCGCCCCACCGCCCACCACCCCCCCGAGCTCATCGTCAGCAACTTCTCCA
CCGCCCTGGGGCTGCGCGTCGCGCGCATGCTGGCCGCCCTCTTCCCGCAC
CCGCCGCACTTTGCCGCGCGCCAGGCCGTCACGCTGCGCAACCAGCGCGA
CTTCATCTTCTTCCGCTTCCACCGCTACGTCTTCGCCGCCGCGCGCGACA
GCGCCCGCCTGCAGGAGCTCGGCCCGCGCTTCACCCTCAAGCTGCGCGCC
CTGCACCGCGGCCTCTTCCACCACCCCGACCGCGCCGACCACCACTTCCG
CTGGAAGCCCGCCGCCCACGTCAACCGCCGCCGCTTCTTTCTGTGA
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