Gvermi8036.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8036.t1
Unique NameGvermi8036.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:774974..775691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN050CT
Preferred nameeIF(iso)4E
PFAMsIF4E
Max annot lvl2759|Eukaryota
KEGG koko:K03259,ko:K10999
KEGG TC4.D.3.1.4,4.D.3.1.7
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
GOsGO:0000184,GO:0000339,GO:0000340,GO:0000932,GO:0000956,GO:0002181,GO:0002183,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005845,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008135,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016281,GO:0019222,GO:0019439,GO:0019538,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032266,GO:0032991,GO:0034059,GO:0034518,GO:0034641,GO:0034645,GO:0034655,GO:0035091,GO:0035770,GO:0036293,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048583,GO:0048585,GO:0050687,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070482,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901981,GO:1990904
Evalue3.77e-52
EggNOG OGsCOG5053@1|root,KOG1670@2759|Eukaryota
EC2.4.1.12
Descriptiontranslation initiation factor activity
COG categoryJ
CAZyGT2
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03012,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8036Gvermi8036Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 774974..775691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1Gvermi8036.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 774974..775691 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1.start1Gvermi8036.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 774974..774976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1.CDS1Gvermi8036.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 774974..775131 +
Gvermi8036.t1.CDS2Gvermi8036.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 775268..775691 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1.exon1Gvermi8036.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 774974..775131 +
Gvermi8036.t1.exon2Gvermi8036.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 775268..775691 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1.intron1Gvermi8036.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 775132..775267 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8036.t1.stop1Gvermi8036.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 775689..775691 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8036.t1 ID=Gvermi8036.t1|Name=Gvermi8036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=194bp
MADEHAQADDAPHPLQFKWTLWHDFVTTRNRSAAYAANLRPIASFDTVED
FWAVFNSLKEPSQLPPQHTYNLFKFGIDPKWEDPQNVDGGEWRVTFPNSH
MPDLDKCWINTILTVIGEGFGPQESDDIAGIVMNRKRGINRVAIWTKSAS
QEDLQTRIGHRWRETSGITSDLPYLLFKDSISSKKPKPRYFID*
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spliced messenger RNA

>Gvermi8036.t1 ID=Gvermi8036.t1|Name=Gvermi8036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=582bp|location=Sequence derived from alignment at ScGOVlb_24226:774974..775691+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGAACACGCGCAGGCCGACGACGCCCCGCACCCCCTGCAGTT
CAAGTGGACCCTCTGGCACGACTTTGTCACCACCAGGAACCGCAGCGCCG
CCTACGCCGCCAACCTGCGCCCCATCGCTTCGTTCGACACCGTGGAGGAC
TTTTGGGCCGTATTCAACAGTCTCAAGGAGCCCTCGCAGCTTCCTCCCCA
GCATACGTACAACCTCTTCAAGTTTGGAATCGATCCCAAGTGGGAGGACC
CGCAAAATGTCGACGGCGGAGAGTGGAGAGTCACATTTCCAAACTCTCAC
ATGCCCGACCTGGACAAGTGCTGGATTAACACGATCCTCACCGTCATAGG
TGAGGGCTTCGGTCCGCAAGAAAGTGACGACATTGCGGGCATTGTAATGA
ACCGGAAGCGCGGCATCAATCGCGTTGCAATTTGGACCAAGTCAGCAAGT
CAAGAGGACTTGCAAACTAGGATTGGCCACCGCTGGCGAGAGACTTCGGG
AATCACCTCTGATCTGCCTTATCTTCTATTCAAGGACTCCATTTCGTCCA
AGAAACCAAAGCCACGCTATTTCATTGACTGA
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protein sequence of Gvermi8036.t1

>Gvermi8036.t1 ID=Gvermi8036.t1|Name=Gvermi8036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=194bp
MADEHAQADDAPHPLQFKWTLWHDFVTTRNRSAAYAANLRPIASFDTVED
FWAVFNSLKEPSQLPPQHTYNLFKFGIDPKWEDPQNVDGGEWRVTFPNSH
MPDLDKCWINTILTVIGEGFGPQESDDIAGIVMNRKRGINRVAIWTKSAS
QEDLQTRIGHRWRETSGITSDLPYLLFKDSISSKKPKPRYFID*
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mRNA from alignment at ScGOVlb_24226:774974..775691+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8036.t1 ID=Gvermi8036.t1|Name=Gvermi8036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=718bp|location=Sequence derived from alignment at ScGOVlb_24226:774974..775691+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGAACACGCGCAGGCCGACGACGCCCCGCACCCCCTGCAGTT
CAAGTGGACCCTCTGGCACGACTTTGTCACCACCAGGAACCGCAGCGCCG
CCTACGCCGCCAACCTGCGCCCCATCGCTTCGTTCGACACCGTGGAGGAC
TTTTGGGCGTAAGTTTTGTTCTGTCGCCGCCCGTTTGCGCCGTGCTTGGA
TGCCTCCCTGTGCTCACCTGTTTGTTTTCTGCGTTCACTGCCCGTGCGTT
CCGCCTGGCGATTCGGCTGTGCGCTCCAACATGCCACCGCGCAGCGTATT
CAACAGTCTCAAGGAGCCCTCGCAGCTTCCTCCCCAGCATACGTACAACC
TCTTCAAGTTTGGAATCGATCCCAAGTGGGAGGACCCGCAAAATGTCGAC
GGCGGAGAGTGGAGAGTCACATTTCCAAACTCTCACATGCCCGACCTGGA
CAAGTGCTGGATTAACACGATCCTCACCGTCATAGGTGAGGGCTTCGGTC
CGCAAGAAAGTGACGACATTGCGGGCATTGTAATGAACCGGAAGCGCGGC
ATCAATCGCGTTGCAATTTGGACCAAGTCAGCAAGTCAAGAGGACTTGCA
AACTAGGATTGGCCACCGCTGGCGAGAGACTTCGGGAATCACCTCTGATC
TGCCTTATCTTCTATTCAAGGACTCCATTTCGTCCAAGAAACCAAAGCCA
CGCTATTTCATTGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:774974..775691+

>Gvermi8036.t1 ID=Gvermi8036.t1|Name=Gvermi8036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=582bp|location=Sequence derived from alignment at ScGOVlb_24226:774974..775691+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGAACACGCGCAGGCCGACGACGCCCCGCACCCCCTGCAGTT
CAAGTGGACCCTCTGGCACGACTTTGTCACCACCAGGAACCGCAGCGCCG
CCTACGCCGCCAACCTGCGCCCCATCGCTTCGTTCGACACCGTGGAGGAC
TTTTGGGCCGTATTCAACAGTCTCAAGGAGCCCTCGCAGCTTCCTCCCCA
GCATACGTACAACCTCTTCAAGTTTGGAATCGATCCCAAGTGGGAGGACC
CGCAAAATGTCGACGGCGGAGAGTGGAGAGTCACATTTCCAAACTCTCAC
ATGCCCGACCTGGACAAGTGCTGGATTAACACGATCCTCACCGTCATAGG
TGAGGGCTTCGGTCCGCAAGAAAGTGACGACATTGCGGGCATTGTAATGA
ACCGGAAGCGCGGCATCAATCGCGTTGCAATTTGGACCAAGTCAGCAAGT
CAAGAGGACTTGCAAACTAGGATTGGCCACCGCTGGCGAGAGACTTCGGG
AATCACCTCTGATCTGCCTTATCTTCTATTCAAGGACTCCATTTCGTCCA
AGAAACCAAAGCCACGCTATTTCATTGACTGA
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