Gvermi8033.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8033.t1
Unique NameGvermi8033.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:766420..768334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707961.1
PFAMsABC_membrane_2,ABC_tran,PWWP
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue2.53e-174
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota
DescriptionATP-binding cassette sub-family D
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8033Gvermi8033Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 766420..768334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1Gvermi8033.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 766420..768334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1.stop1Gvermi8033.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 766420..766422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1.CDS1Gvermi8033.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 766420..768245 -
Gvermi8033.t1.CDS2Gvermi8033.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 768310..768334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1.exon1Gvermi8033.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 766420..768245 -
Gvermi8033.t1.exon2Gvermi8033.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 768310..768334 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1.intron1Gvermi8033.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 768246..768309 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8033.t1.start1Gvermi8033.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 768332..768334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8033.t1 ID=Gvermi8033.t1|Name=Gvermi8033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=617bp
MAAMRVKTTNGADKKTPVKETDAERKRREVGRLLSLFSRLALPYWKAEKQ
ARRDFAGVVALTFLQSGVSVLFSFVSRDFWTALNTKNTELFYHQAEIFFV
TLIVFTPVVVYYQYFRDRCALRWREWITDRILNQYCSNRNFYTLEAVDNP
DQRIAQDLNSFTTESIALVLTLLVSAIDLVSFSAILFSIYPYLFLVLLIY
ASTGTYLTTVLGKRLIGLNYNQIVREADLRYGLIRMRENAESIAFFNGER
REEAEIKRRLKSALENMGDVINLRKQVGFLQTGYKYAVRILPAICVAPRY
FSGAIELGSVTQSFSAFSHILDDLSLVVNRFDSLSQFGAGIDRLAQFVQA
LEHNIAEEKKTFGTHSDKAPIKGRGHRGGIILNKIPGRCRSLSVQNLTLF
TPDDEMPRKLIDNLSFTLSPGERLLVCGPSGNGKSSLLRAIAGLWTNGYG
SVTCPDDNGVFFLPQKPYCTLGSLRDNLVYPKDAKTSNITDGALLRALDL
VHLAKLPSRMGGLDAVMDWGEVLSLGEQQRLQFARLFLSGTGVAIIDEGT
SALSVQIEKLMYDLVTGMGASVVSVGHRPTLLGYHDRILRLRAGQWELDD
ITQKERDEVVTQPLCS*
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spliced messenger RNA

>Gvermi8033.t1 ID=Gvermi8033.t1|Name=Gvermi8033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24226:766420..768334- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCGATGCGCGTCAAGACGACGAACGGTGCTGATAAAAAAACACC
TGTGAAAGAAACAGATGCAGAGCGGAAGCGACGTGAGGTAGGTCGCCTCC
TATCTCTTTTCTCCCGCTTAGCGCTTCCATACTGGAAAGCAGAGAAGCAA
GCGAGGCGAGATTTTGCAGGTGTCGTCGCTCTCACCTTCCTGCAGTCTGG
CGTCTCAGTCCTGTTCTCGTTCGTATCGCGCGACTTCTGGACCGCGCTCA
ACACCAAGAACACAGAACTCTTCTACCATCAGGCTGAAATCTTCTTTGTT
ACACTGATTGTTTTCACTCCCGTTGTAGTGTACTACCAATATTTTCGGGA
CAGGTGCGCACTGCGTTGGAGAGAGTGGATCACCGACAGAATTCTGAATC
AGTACTGCTCCAATCGTAACTTCTATACTCTTGAAGCAGTCGACAATCCA
GACCAGCGCATTGCGCAGGACCTCAACTCGTTTACAACTGAATCAATCGC
TCTGGTGTTGACATTGCTCGTGTCGGCCATCGACTTGGTTTCATTTTCCG
CCATTCTGTTCTCTATCTACCCCTATCTGTTTTTAGTTCTTCTCATTTAT
GCATCCACGGGCACGTATTTAACCACAGTTTTGGGAAAACGGCTCATTGG
TCTCAACTACAACCAAATTGTCCGCGAGGCGGATCTCCGATACGGTTTGA
TTCGAATGCGGGAGAACGCGGAGAGCATAGCGTTCTTCAACGGTGAGCGA
AGAGAGGAAGCTGAAATCAAACGCCGGTTAAAGTCGGCCCTCGAGAATAT
GGGAGACGTTATCAATCTTCGCAAGCAAGTCGGTTTCTTGCAAACAGGTT
ACAAATACGCTGTTCGCATACTGCCGGCCATTTGCGTCGCCCCAAGGTAT
TTCTCAGGGGCCATAGAACTGGGCAGCGTAACACAAAGCTTCAGTGCATT
CTCACACATTCTTGACGACCTTAGTCTTGTGGTCAATCGTTTCGATAGTT
TGAGCCAGTTTGGAGCCGGCATTGATCGACTCGCTCAATTTGTACAAGCA
CTTGAGCACAATATTGCGGAAGAGAAGAAGACATTTGGCACCCATTCCGA
TAAAGCTCCCATAAAGGGGCGAGGCCATCGTGGTGGTATTATTCTCAACA
AGATTCCTGGACGGTGTCGGTCATTGTCCGTGCAAAATCTCACATTGTTC
ACCCCTGATGATGAGATGCCAAGAAAACTGATAGATAATTTGTCTTTCAC
CCTCTCACCGGGTGAGCGTCTGCTGGTTTGTGGCCCGTCTGGTAACGGGA
AATCATCTCTTTTAAGGGCTATAGCAGGATTATGGACAAATGGATATGGC
TCGGTCACGTGCCCCGATGATAATGGAGTCTTCTTTCTTCCACAAAAGCC
CTATTGCACTTTAGGATCTCTGCGTGATAATCTAGTTTACCCGAAGGATG
CCAAAACATCGAACATAACGGATGGTGCCTTGCTTCGCGCATTAGATCTC
GTTCATTTGGCTAAACTACCTTCGAGAATGGGGGGTCTGGATGCCGTCAT
GGATTGGGGAGAGGTTCTGAGTCTCGGTGAACAACAACGATTACAATTTG
CAAGATTATTTCTATCGGGAACTGGGGTGGCAATTATTGATGAAGGTACC
AGTGCCTTGAGTGTTCAAATTGAGAAGCTAATGTATGACTTAGTAACTGG
AATGGGAGCGTCGGTTGTCAGTGTTGGTCATCGCCCCACTTTGCTGGGCT
ATCATGATAGAATTCTACGGCTTCGTGCTGGGCAATGGGAGCTCGACGAT
ATCACGCAGAAAGAGCGTGATGAAGTTGTAACTCAGCCTTTGTGTTCATG
A
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protein sequence of Gvermi8033.t1

>Gvermi8033.t1 ID=Gvermi8033.t1|Name=Gvermi8033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=617bp
MAAMRVKTTNGADKKTPVKETDAERKRREVGRLLSLFSRLALPYWKAEKQ
ARRDFAGVVALTFLQSGVSVLFSFVSRDFWTALNTKNTELFYHQAEIFFV
TLIVFTPVVVYYQYFRDRCALRWREWITDRILNQYCSNRNFYTLEAVDNP
DQRIAQDLNSFTTESIALVLTLLVSAIDLVSFSAILFSIYPYLFLVLLIY
ASTGTYLTTVLGKRLIGLNYNQIVREADLRYGLIRMRENAESIAFFNGER
REEAEIKRRLKSALENMGDVINLRKQVGFLQTGYKYAVRILPAICVAPRY
FSGAIELGSVTQSFSAFSHILDDLSLVVNRFDSLSQFGAGIDRLAQFVQA
LEHNIAEEKKTFGTHSDKAPIKGRGHRGGIILNKIPGRCRSLSVQNLTLF
TPDDEMPRKLIDNLSFTLSPGERLLVCGPSGNGKSSLLRAIAGLWTNGYG
SVTCPDDNGVFFLPQKPYCTLGSLRDNLVYPKDAKTSNITDGALLRALDL
VHLAKLPSRMGGLDAVMDWGEVLSLGEQQRLQFARLFLSGTGVAIIDEGT
SALSVQIEKLMYDLVTGMGASVVSVGHRPTLLGYHDRILRLRAGQWELDD
ITQKERDEVVTQPLCS*
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mRNA from alignment at ScGOVlb_24226:766420..768334-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8033.t1 ID=Gvermi8033.t1|Name=Gvermi8033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1915bp|location=Sequence derived from alignment at ScGOVlb_24226:766420..768334- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCGATGCGCGTCAAGACGAGTACAAGTGAGGCAAAGCAGAACAA
TAACCCCAAAATCCTCATTGCAGGATCCAAAGCCGTCAGCGAACGGTGCT
GATAAAAAAACACCTGTGAAAGAAACAGATGCAGAGCGGAAGCGACGTGA
GGTAGGTCGCCTCCTATCTCTTTTCTCCCGCTTAGCGCTTCCATACTGGA
AAGCAGAGAAGCAAGCGAGGCGAGATTTTGCAGGTGTCGTCGCTCTCACC
TTCCTGCAGTCTGGCGTCTCAGTCCTGTTCTCGTTCGTATCGCGCGACTT
CTGGACCGCGCTCAACACCAAGAACACAGAACTCTTCTACCATCAGGCTG
AAATCTTCTTTGTTACACTGATTGTTTTCACTCCCGTTGTAGTGTACTAC
CAATATTTTCGGGACAGGTGCGCACTGCGTTGGAGAGAGTGGATCACCGA
CAGAATTCTGAATCAGTACTGCTCCAATCGTAACTTCTATACTCTTGAAG
CAGTCGACAATCCAGACCAGCGCATTGCGCAGGACCTCAACTCGTTTACA
ACTGAATCAATCGCTCTGGTGTTGACATTGCTCGTGTCGGCCATCGACTT
GGTTTCATTTTCCGCCATTCTGTTCTCTATCTACCCCTATCTGTTTTTAG
TTCTTCTCATTTATGCATCCACGGGCACGTATTTAACCACAGTTTTGGGA
AAACGGCTCATTGGTCTCAACTACAACCAAATTGTCCGCGAGGCGGATCT
CCGATACGGTTTGATTCGAATGCGGGAGAACGCGGAGAGCATAGCGTTCT
TCAACGGTGAGCGAAGAGAGGAAGCTGAAATCAAACGCCGGTTAAAGTCG
GCCCTCGAGAATATGGGAGACGTTATCAATCTTCGCAAGCAAGTCGGTTT
CTTGCAAACAGGTTACAAATACGCTGTTCGCATACTGCCGGCCATTTGCG
TCGCCCCAAGGTATTTCTCAGGGGCCATAGAACTGGGCAGCGTAACACAA
AGCTTCAGTGCATTCTCACACATTCTTGACGACCTTAGTCTTGTGGTCAA
TCGTTTCGATAGTTTGAGCCAGTTTGGAGCCGGCATTGATCGACTCGCTC
AATTTGTACAAGCACTTGAGCACAATATTGCGGAAGAGAAGAAGACATTT
GGCACCCATTCCGATAAAGCTCCCATAAAGGGGCGAGGCCATCGTGGTGG
TATTATTCTCAACAAGATTCCTGGACGGTGTCGGTCATTGTCCGTGCAAA
ATCTCACATTGTTCACCCCTGATGATGAGATGCCAAGAAAACTGATAGAT
AATTTGTCTTTCACCCTCTCACCGGGTGAGCGTCTGCTGGTTTGTGGCCC
GTCTGGTAACGGGAAATCATCTCTTTTAAGGGCTATAGCAGGATTATGGA
CAAATGGATATGGCTCGGTCACGTGCCCCGATGATAATGGAGTCTTCTTT
CTTCCACAAAAGCCCTATTGCACTTTAGGATCTCTGCGTGATAATCTAGT
TTACCCGAAGGATGCCAAAACATCGAACATAACGGATGGTGCCTTGCTTC
GCGCATTAGATCTCGTTCATTTGGCTAAACTACCTTCGAGAATGGGGGGT
CTGGATGCCGTCATGGATTGGGGAGAGGTTCTGAGTCTCGGTGAACAACA
ACGATTACAATTTGCAAGATTATTTCTATCGGGAACTGGGGTGGCAATTA
TTGATGAAGGTACCAGTGCCTTGAGTGTTCAAATTGAGAAGCTAATGTAT
GACTTAGTAACTGGAATGGGAGCGTCGGTTGTCAGTGTTGGTCATCGCCC
CACTTTGCTGGGCTATCATGATAGAATTCTACGGCTTCGTGCTGGGCAAT
GGGAGCTCGACGATATCACGCAGAAAGAGCGTGATGAAGTTGTAACTCAG
CCTTTGTGTTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:766420..768334-

>Gvermi8033.t1 ID=Gvermi8033.t1|Name=Gvermi8033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24226:766420..768334- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCGATGCGCGTCAAGACGACGAACGGTGCTGATAAAAAAACACC
TGTGAAAGAAACAGATGCAGAGCGGAAGCGACGTGAGGTAGGTCGCCTCC
TATCTCTTTTCTCCCGCTTAGCGCTTCCATACTGGAAAGCAGAGAAGCAA
GCGAGGCGAGATTTTGCAGGTGTCGTCGCTCTCACCTTCCTGCAGTCTGG
CGTCTCAGTCCTGTTCTCGTTCGTATCGCGCGACTTCTGGACCGCGCTCA
ACACCAAGAACACAGAACTCTTCTACCATCAGGCTGAAATCTTCTTTGTT
ACACTGATTGTTTTCACTCCCGTTGTAGTGTACTACCAATATTTTCGGGA
CAGGTGCGCACTGCGTTGGAGAGAGTGGATCACCGACAGAATTCTGAATC
AGTACTGCTCCAATCGTAACTTCTATACTCTTGAAGCAGTCGACAATCCA
GACCAGCGCATTGCGCAGGACCTCAACTCGTTTACAACTGAATCAATCGC
TCTGGTGTTGACATTGCTCGTGTCGGCCATCGACTTGGTTTCATTTTCCG
CCATTCTGTTCTCTATCTACCCCTATCTGTTTTTAGTTCTTCTCATTTAT
GCATCCACGGGCACGTATTTAACCACAGTTTTGGGAAAACGGCTCATTGG
TCTCAACTACAACCAAATTGTCCGCGAGGCGGATCTCCGATACGGTTTGA
TTCGAATGCGGGAGAACGCGGAGAGCATAGCGTTCTTCAACGGTGAGCGA
AGAGAGGAAGCTGAAATCAAACGCCGGTTAAAGTCGGCCCTCGAGAATAT
GGGAGACGTTATCAATCTTCGCAAGCAAGTCGGTTTCTTGCAAACAGGTT
ACAAATACGCTGTTCGCATACTGCCGGCCATTTGCGTCGCCCCAAGGTAT
TTCTCAGGGGCCATAGAACTGGGCAGCGTAACACAAAGCTTCAGTGCATT
CTCACACATTCTTGACGACCTTAGTCTTGTGGTCAATCGTTTCGATAGTT
TGAGCCAGTTTGGAGCCGGCATTGATCGACTCGCTCAATTTGTACAAGCA
CTTGAGCACAATATTGCGGAAGAGAAGAAGACATTTGGCACCCATTCCGA
TAAAGCTCCCATAAAGGGGCGAGGCCATCGTGGTGGTATTATTCTCAACA
AGATTCCTGGACGGTGTCGGTCATTGTCCGTGCAAAATCTCACATTGTTC
ACCCCTGATGATGAGATGCCAAGAAAACTGATAGATAATTTGTCTTTCAC
CCTCTCACCGGGTGAGCGTCTGCTGGTTTGTGGCCCGTCTGGTAACGGGA
AATCATCTCTTTTAAGGGCTATAGCAGGATTATGGACAAATGGATATGGC
TCGGTCACGTGCCCCGATGATAATGGAGTCTTCTTTCTTCCACAAAAGCC
CTATTGCACTTTAGGATCTCTGCGTGATAATCTAGTTTACCCGAAGGATG
CCAAAACATCGAACATAACGGATGGTGCCTTGCTTCGCGCATTAGATCTC
GTTCATTTGGCTAAACTACCTTCGAGAATGGGGGGTCTGGATGCCGTCAT
GGATTGGGGAGAGGTTCTGAGTCTCGGTGAACAACAACGATTACAATTTG
CAAGATTATTTCTATCGGGAACTGGGGTGGCAATTATTGATGAAGGTACC
AGTGCCTTGAGTGTTCAAATTGAGAAGCTAATGTATGACTTAGTAACTGG
AATGGGAGCGTCGGTTGTCAGTGTTGGTCATCGCCCCACTTTGCTGGGCT
ATCATGATAGAATTCTACGGCTTCGTGCTGGGCAATGGGAGCTCGACGAT
ATCACGCAGAAAGAGCGTGATGAAGTTGTAACTCAGCCTTTGTGTTCATG
A
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