Gvermi8018.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8018.t1
Unique NameGvermi8018.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:672064..672679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8018Gvermi8018Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 672064..672679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1Gvermi8018.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 672064..672679 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1.stop1Gvermi8018.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 672064..672066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1.CDS1Gvermi8018.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 672064..672548 -
Gvermi8018.t1.CDS2Gvermi8018.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 672628..672679 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1.exon1Gvermi8018.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 672064..672548 -
Gvermi8018.t1.exon2Gvermi8018.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 672628..672679 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1.intron1Gvermi8018.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 672549..672627 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8018.t1.start1Gvermi8018.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 672677..672679 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8018.t1 ID=Gvermi8018.t1|Name=Gvermi8018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=179bp
LSEYPADFLDEVRRIVRAPWFISRVRERIEWPHLRFSGVLFGREATAQCG
DGDVDGEGDGDDDGDGDGDGVPESLRQLACRADMKLIDVPPLVVQRAAAS
TKRTLPRPHARIVAVFETYGHSRRVLLELQNRRAQFEIDLQKQRQAWSDR
GDIRRNETNIMHLHGSDPFDEHYLDYYL*
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spliced messenger RNA

>Gvermi8018.t1 ID=Gvermi8018.t1|Name=Gvermi8018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp|location=Sequence derived from alignment at ScGOVlb_24226:672064..672679- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGCGAGTATCCTGCTGACTTTCTGGACGAGGTGCGTCGTATCGTGCG
AGCACCCTGGTTCATTTCGCGCGTGCGCGAGCGCATCGAGTGGCCGCACC
TGCGGTTCAGCGGCGTGCTGTTCGGGCGCGAGGCGACGGCGCAGTGCGGC
GACGGCGACGTCGATGGCGAAGGCGATGGCGACGACGACGGCGACGGCGA
CGGCGACGGCGTGCCAGAGAGCCTGCGGCAGCTGGCTTGCCGCGCCGACA
TGAAGCTCATCGACGTTCCGCCGCTGGTGGTGCAGCGCGCGGCCGCGAGC
ACCAAGCGCACGCTACCGCGCCCGCACGCGCGCATCGTCGCCGTGTTCGA
GACGTACGGGCACTCGCGCCGCGTGCTGCTCGAGCTCCAAAATCGACGCG
CCCAATTCGAAATAGACCTCCAAAAACAGCGCCAGGCGTGGTCGGATCGC
GGCGACATCCGCCGCAACGAGACCAACATCATGCATCTGCACGGCTCCGA
TCCGTTCGACGAGCATTACTTAGACTACTACCTGTAA
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protein sequence of Gvermi8018.t1

>Gvermi8018.t1 ID=Gvermi8018.t1|Name=Gvermi8018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=179bp
LSEYPADFLDEVRRIVRAPWFISRVRERIEWPHLRFSGVLFGREATAQCG
DGDVDGEGDGDDDGDGDGDGVPESLRQLACRADMKLIDVPPLVVQRAAAS
TKRTLPRPHARIVAVFETYGHSRRVLLELQNRRAQFEIDLQKQRQAWSDR
GDIRRNETNIMHLHGSDPFDEHYLDYYL*
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mRNA from alignment at ScGOVlb_24226:672064..672679-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8018.t1 ID=Gvermi8018.t1|Name=Gvermi8018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=616bp|location=Sequence derived from alignment at ScGOVlb_24226:672064..672679- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGAGCGAGTATCCTGCTGACTTTCTGGACGAGGTGCGTCGTATCGTGCG
AGGTAAGTGTGCACGCGGCGCCTCATCGCGCGCGACTCGCGCCGTTCAGT
GCCGGCGCTCGGGCTTCTGACGCGGGCGCAGCACCCTGGTTCATTTCGCG
CGTGCGCGAGCGCATCGAGTGGCCGCACCTGCGGTTCAGCGGCGTGCTGT
TCGGGCGCGAGGCGACGGCGCAGTGCGGCGACGGCGACGTCGATGGCGAA
GGCGATGGCGACGACGACGGCGACGGCGACGGCGACGGCGTGCCAGAGAG
CCTGCGGCAGCTGGCTTGCCGCGCCGACATGAAGCTCATCGACGTTCCGC
CGCTGGTGGTGCAGCGCGCGGCCGCGAGCACCAAGCGCACGCTACCGCGC
CCGCACGCGCGCATCGTCGCCGTGTTCGAGACGTACGGGCACTCGCGCCG
CGTGCTGCTCGAGCTCCAAAATCGACGCGCCCAATTCGAAATAGACCTCC
AAAAACAGCGCCAGGCGTGGTCGGATCGCGGCGACATCCGCCGCAACGAG
ACCAACATCATGCATCTGCACGGCTCCGATCCGTTCGACGAGCATTACTT
AGACTACTACCTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:672064..672679-

>Gvermi8018.t1 ID=Gvermi8018.t1|Name=Gvermi8018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=537bp|location=Sequence derived from alignment at ScGOVlb_24226:672064..672679- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGAGCGAGTATCCTGCTGACTTTCTGGACGAGGTGCGTCGTATCGTGCG
AGCACCCTGGTTCATTTCGCGCGTGCGCGAGCGCATCGAGTGGCCGCACC
TGCGGTTCAGCGGCGTGCTGTTCGGGCGCGAGGCGACGGCGCAGTGCGGC
GACGGCGACGTCGATGGCGAAGGCGATGGCGACGACGACGGCGACGGCGA
CGGCGACGGCGTGCCAGAGAGCCTGCGGCAGCTGGCTTGCCGCGCCGACA
TGAAGCTCATCGACGTTCCGCCGCTGGTGGTGCAGCGCGCGGCCGCGAGC
ACCAAGCGCACGCTACCGCGCCCGCACGCGCGCATCGTCGCCGTGTTCGA
GACGTACGGGCACTCGCGCCGCGTGCTGCTCGAGCTCCAAAATCGACGCG
CCCAATTCGAAATAGACCTCCAAAAACAGCGCCAGGCGTGGTCGGATCGC
GGCGACATCCGCCGCAACGAGACCAACATCATGCATCTGCACGGCTCCGA
TCCGTTCGACGAGCATTACTTAGACTACTACCTGTAA
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