Gvermi8014.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8014.t1
Unique NameGvermi8014.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:666708..667832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR130CT
PFAMsAcyltransferase
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00994
KEGG koko:K08246,ko:K13510
KEGG ReactionR01318,R03437,R03438,R03775,R09036
KEGG Pathwayko00100,ko00564,ko00565,ko01100,ko01110,map00100,map00564,map00565,map01100,map01110
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0047184,GO:0050200,GO:0071617,GO:0071618,GO:0071704,GO:0090407,GO:1901576
Evalue1.2e-54
EggNOG OGsCOG0204@1|root,KOG4666@2759|Eukaryota
EC2.3.1.23,2.3.1.67,5.5.1.9
Description1-alkylglycerophosphocholine O-acetyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8014Gvermi8014Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 666708..667832 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8014.t1.stop1Gvermi8014.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 666708..666710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8014.t1.CDS1Gvermi8014.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 666708..667832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8014.t1.exon1Gvermi8014.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 666708..667832 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8014.t1.start1Gvermi8014.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 667830..667832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8014.t1Gvermi8014.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 666708..667832 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8014.t1 ID=Gvermi8014.t1|Name=Gvermi8014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp
MAENATIPTDSSQPESDGDMPFIADHGRLPRPVSHSAFDPFRRFSPKPHF
LADVLIKLCALVLIPLRISVALVSILFSYTVVKLFGPSITKKNITHFEPI
LLPKWRRRIVAAASKFLGRALLFTFGFWCVEGSDHPDYDQEKASKATVLS
NHSSIADPCLLAYLYAPAFVAKSDVWKIPGVGLVGAAQHAFYIDRMENRG
ISVSQAIAARQRLVQHSALEIPPVAIFPEGTTTNGRYLLSFKSGAFVAGL
PVSPVLIQYKSKWFSPTYESIRTKPYLIGILCQPWNRVRYYRLPVYYPSP
EEKQDAKLFAQNVHKMMVQESEAAFGSGEKLESSTSNYVDKLEYHSITRG
KRLRRGLQLNTEAPSSSNSSFAAT*
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spliced messenger RNA

>Gvermi8014.t1 ID=Gvermi8014.t1|Name=Gvermi8014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24226:666708..667832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGAATGCCACAATCCCGACGGACTCTTCGCAACCTGAAAGCGA
TGGAGACATGCCGTTCATAGCCGATCACGGCCGCCTTCCTCGACCTGTCT
CGCATTCAGCCTTTGACCCATTTCGAAGATTCTCCCCGAAACCGCACTTT
CTTGCCGATGTGCTAATCAAACTCTGTGCCCTCGTTCTCATTCCGTTGCG
AATAAGCGTTGCTTTAGTATCTATTCTTTTTTCGTACACAGTGGTCAAGC
TGTTTGGACCATCAATCACAAAAAAAAACATCACTCATTTTGAACCCATC
TTGCTGCCGAAGTGGAGAAGGCGCATCGTGGCGGCAGCGTCAAAATTTTT
GGGCAGAGCCCTTTTGTTCACTTTCGGCTTTTGGTGCGTCGAGGGAAGTG
ATCATCCGGATTACGACCAAGAAAAGGCGTCCAAGGCCACAGTTTTGTCA
AACCACTCGAGTATAGCTGACCCATGCCTGCTCGCATACCTGTATGCCCC
CGCGTTCGTCGCCAAATCAGACGTATGGAAGATTCCAGGCGTGGGGCTCG
TTGGCGCTGCCCAGCACGCGTTCTATATTGATCGCATGGAGAACAGGGGC
ATCAGTGTTTCGCAAGCCATAGCAGCCCGTCAGCGGCTTGTGCAACACTC
CGCTCTCGAAATCCCTCCGGTAGCCATATTTCCGGAGGGGACGACCACAA
ACGGCAGATACTTGCTATCTTTCAAATCCGGGGCGTTTGTGGCAGGCCTG
CCTGTCTCGCCAGTACTTATTCAGTACAAGTCCAAGTGGTTTTCTCCGAC
ATATGAGTCCATAAGGACAAAACCGTATTTAATCGGTATTCTTTGTCAAC
CATGGAACAGAGTTCGATACTACCGCCTGCCTGTGTACTATCCTTCCCCA
GAAGAGAAGCAAGACGCTAAGTTGTTTGCGCAAAACGTGCATAAAATGAT
GGTACAAGAAAGCGAGGCCGCCTTTGGGAGCGGTGAGAAGCTCGAGAGTT
CCACGTCGAACTATGTGGACAAGCTCGAATATCACTCAATAACTCGTGGA
AAAAGACTACGCAGGGGGTTGCAATTGAACACTGAAGCACCCTCTTCGTC
TAATAGCTCTTTCGCGGCAACATAG
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protein sequence of Gvermi8014.t1

>Gvermi8014.t1 ID=Gvermi8014.t1|Name=Gvermi8014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=375bp
MAENATIPTDSSQPESDGDMPFIADHGRLPRPVSHSAFDPFRRFSPKPHF
LADVLIKLCALVLIPLRISVALVSILFSYTVVKLFGPSITKKNITHFEPI
LLPKWRRRIVAAASKFLGRALLFTFGFWCVEGSDHPDYDQEKASKATVLS
NHSSIADPCLLAYLYAPAFVAKSDVWKIPGVGLVGAAQHAFYIDRMENRG
ISVSQAIAARQRLVQHSALEIPPVAIFPEGTTTNGRYLLSFKSGAFVAGL
PVSPVLIQYKSKWFSPTYESIRTKPYLIGILCQPWNRVRYYRLPVYYPSP
EEKQDAKLFAQNVHKMMVQESEAAFGSGEKLESSTSNYVDKLEYHSITRG
KRLRRGLQLNTEAPSSSNSSFAAT*
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mRNA from alignment at ScGOVlb_24226:666708..667832-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8014.t1 ID=Gvermi8014.t1|Name=Gvermi8014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24226:666708..667832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGAATGCCACAATCCCGACGGACTCTTCGCAACCTGAAAGCGA
TGGAGACATGCCGTTCATAGCCGATCACGGCCGCCTTCCTCGACCTGTCT
CGCATTCAGCCTTTGACCCATTTCGAAGATTCTCCCCGAAACCGCACTTT
CTTGCCGATGTGCTAATCAAACTCTGTGCCCTCGTTCTCATTCCGTTGCG
AATAAGCGTTGCTTTAGTATCTATTCTTTTTTCGTACACAGTGGTCAAGC
TGTTTGGACCATCAATCACAAAAAAAAACATCACTCATTTTGAACCCATC
TTGCTGCCGAAGTGGAGAAGGCGCATCGTGGCGGCAGCGTCAAAATTTTT
GGGCAGAGCCCTTTTGTTCACTTTCGGCTTTTGGTGCGTCGAGGGAAGTG
ATCATCCGGATTACGACCAAGAAAAGGCGTCCAAGGCCACAGTTTTGTCA
AACCACTCGAGTATAGCTGACCCATGCCTGCTCGCATACCTGTATGCCCC
CGCGTTCGTCGCCAAATCAGACGTATGGAAGATTCCAGGCGTGGGGCTCG
TTGGCGCTGCCCAGCACGCGTTCTATATTGATCGCATGGAGAACAGGGGC
ATCAGTGTTTCGCAAGCCATAGCAGCCCGTCAGCGGCTTGTGCAACACTC
CGCTCTCGAAATCCCTCCGGTAGCCATATTTCCGGAGGGGACGACCACAA
ACGGCAGATACTTGCTATCTTTCAAATCCGGGGCGTTTGTGGCAGGCCTG
CCTGTCTCGCCAGTACTTATTCAGTACAAGTCCAAGTGGTTTTCTCCGAC
ATATGAGTCCATAAGGACAAAACCGTATTTAATCGGTATTCTTTGTCAAC
CATGGAACAGAGTTCGATACTACCGCCTGCCTGTGTACTATCCTTCCCCA
GAAGAGAAGCAAGACGCTAAGTTGTTTGCGCAAAACGTGCATAAAATGAT
GGTACAAGAAAGCGAGGCCGCCTTTGGGAGCGGTGAGAAGCTCGAGAGTT
CCACGTCGAACTATGTGGACAAGCTCGAATATCACTCAATAACTCGTGGA
AAAAGACTACGCAGGGGGTTGCAATTGAACACTGAAGCACCCTCTTCGTC
TAATAGCTCTTTCGCGGCAACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:666708..667832-

>Gvermi8014.t1 ID=Gvermi8014.t1|Name=Gvermi8014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24226:666708..667832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGAATGCCACAATCCCGACGGACTCTTCGCAACCTGAAAGCGA
TGGAGACATGCCGTTCATAGCCGATCACGGCCGCCTTCCTCGACCTGTCT
CGCATTCAGCCTTTGACCCATTTCGAAGATTCTCCCCGAAACCGCACTTT
CTTGCCGATGTGCTAATCAAACTCTGTGCCCTCGTTCTCATTCCGTTGCG
AATAAGCGTTGCTTTAGTATCTATTCTTTTTTCGTACACAGTGGTCAAGC
TGTTTGGACCATCAATCACAAAAAAAAACATCACTCATTTTGAACCCATC
TTGCTGCCGAAGTGGAGAAGGCGCATCGTGGCGGCAGCGTCAAAATTTTT
GGGCAGAGCCCTTTTGTTCACTTTCGGCTTTTGGTGCGTCGAGGGAAGTG
ATCATCCGGATTACGACCAAGAAAAGGCGTCCAAGGCCACAGTTTTGTCA
AACCACTCGAGTATAGCTGACCCATGCCTGCTCGCATACCTGTATGCCCC
CGCGTTCGTCGCCAAATCAGACGTATGGAAGATTCCAGGCGTGGGGCTCG
TTGGCGCTGCCCAGCACGCGTTCTATATTGATCGCATGGAGAACAGGGGC
ATCAGTGTTTCGCAAGCCATAGCAGCCCGTCAGCGGCTTGTGCAACACTC
CGCTCTCGAAATCCCTCCGGTAGCCATATTTCCGGAGGGGACGACCACAA
ACGGCAGATACTTGCTATCTTTCAAATCCGGGGCGTTTGTGGCAGGCCTG
CCTGTCTCGCCAGTACTTATTCAGTACAAGTCCAAGTGGTTTTCTCCGAC
ATATGAGTCCATAAGGACAAAACCGTATTTAATCGGTATTCTTTGTCAAC
CATGGAACAGAGTTCGATACTACCGCCTGCCTGTGTACTATCCTTCCCCA
GAAGAGAAGCAAGACGCTAAGTTGTTTGCGCAAAACGTGCATAAAATGAT
GGTACAAGAAAGCGAGGCCGCCTTTGGGAGCGGTGAGAAGCTCGAGAGTT
CCACGTCGAACTATGTGGACAAGCTCGAATATCACTCAATAACTCGTGGA
AAAAGACTACGCAGGGGGTTGCAATTGAACACTGAAGCACCCTCTTCGTC
TAATAGCTCTTTCGCGGCAACATAG
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