Gvermi8009.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8009.t1
Unique Name	Gvermi8009.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:656767..658503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J03930.1.p
PFAMs	MORN,PIP5K
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K00889
KEGG Reaction	R03469
KEGG Pathway	ko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG Module	M00130
Evalue	9.28e-46
EggNOG OGs	COG5253@1\|root,KOG0229@2759\|Eukaryota,37IC8@33090\|Viridiplantae,3G9JS@35493\|Streptophyta,3KRHU@4447\|Liliopsida,3IPSC@38820\|Poales
EC	2.7.1.68
Description	Phosphatidylinositol phosphate kinases
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8009	Gvermi8009	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 656767..658503 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8009.t1.start1	Gvermi8009.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 656767..656769 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8009.t1.CDS1	Gvermi8009.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 656767..658503 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8009.t1.exon1	Gvermi8009.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 656767..658503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8009.t1.stop1	Gvermi8009.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 658501..658503 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8009.t1	Gvermi8009.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 656767..658503 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:656767..658503+
coding sequence from alignment at ScGOVlb_24226:656767..658503+

mRNA sequence

>Gvermi8009.t1 ID=Gvermi8009.t1|Name=Gvermi8009.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=579bp
MGAATPPDPPPSANSLPLSLHRVASPLTSPSLADPFPPPHSAPADLRLPA
DLFALDQPTSDHTSTSNPLPPHRDNSLDKPPHSAPPALLHARTNRNTMHN
RRPSAAGALTASSHFSKPIEMPPEAAKARLEADAVPANRATLERVQSGNI
DLAHKLSGSTGTNTIKKHVAKFPRIGHGHRKKVKDGQVVFKGHRNWEIVL
SIQFGLKFTSELLDDATDSEPTPDDYEESLAFDFNPNDDRSSVELNTFAR
WVHPAPYVYKLIRQRFGVKESDFLDSTCAESRVREVPTPGKSGALFYITD
DEKYFMKTIQYVEEKMLVSMLPSYYHHVTNNPRTFLTKYLAHFSVQTRRD
RHIRMVVMASIFNDKVYIDQKYDLKGSTFHRCASEEQRKSQNVTLKDQDL
KKPIFFRPEQLDLIMKQLDKDSAYLESHHVMDYSLLVGLSHMLPEENPYF
RSEFGASEENAPYHVGYQLDDQGRKSGVRICLGIIDFLQRFRLRKRLEYG
ARVLQSCSCSAASVAPPHLYKDRFMSFLREKFLPDPNLDVSTLESTVVFS
PLSAHDNEDSSGSQAGSGSDRGKSDSKS*

spliced messenger RNA

>Gvermi8009.t1 ID=Gvermi8009.t1|Name=Gvermi8009.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at ScGOVlb_24226:656767..658503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCGCCACTCCGCCGGACCCCCCGCCCTCCGCGAACTCGCTCCC
ACTCTCCCTCCACCGTGTCGCCTCTCCACTCACCTCCCCCTCCCTCGCAG
ACCCCTTCCCCCCCCCGCACTCCGCTCCCGCAGACCTTCGCCTGCCCGCA
GACCTCTTCGCACTGGACCAACCCACGTCGGACCACACTTCCACCTCCAA
CCCCCTCCCTCCTCACCGCGACAATAGCCTCGACAAGCCCCCCCACTCCG
CCCCACCCGCGCTTCTGCACGCCCGAACCAATCGAAACACCATGCACAAC
CGACGCCCAAGCGCCGCCGGCGCCCTCACCGCCTCCAGTCACTTCTCTAA
GCCCATCGAGATGCCCCCCGAGGCAGCCAAGGCGCGCCTCGAAGCCGACG
CAGTGCCCGCCAACCGCGCAACTCTGGAGCGCGTTCAGTCCGGAAACATC
GATCTGGCCCACAAGCTCAGCGGCAGCACCGGCACTAACACCATCAAGAA
GCACGTTGCCAAGTTCCCGCGCATCGGACACGGCCATCGCAAGAAGGTCA
AGGACGGCCAGGTCGTCTTCAAGGGCCATCGCAACTGGGAGATTGTTTTG
TCCATCCAGTTTGGCCTCAAGTTCACGTCGGAGTTGCTTGACGACGCCAC
CGACAGCGAGCCCACCCCAGACGACTACGAGGAAAGTCTAGCCTTCGACT
TCAATCCCAACGACGACCGCTCCTCTGTTGAGCTCAACACCTTTGCCCGT
TGGGTGCATCCGGCCCCCTACGTGTATAAACTCATTCGCCAGCGCTTTGG
CGTCAAGGAAAGCGACTTTCTTGATTCTACCTGCGCTGAGTCCAGAGTGC
GCGAAGTGCCCACTCCGGGAAAGTCCGGCGCCCTCTTCTACATCACTGAT
GACGAAAAGTACTTTATGAAAACCATTCAATATGTGGAAGAGAAGATGTT
AGTCTCCATGCTTCCCTCGTACTATCACCACGTCACCAACAATCCTCGCA
CCTTCCTCACCAAGTACTTGGCCCACTTCAGCGTACAAACCCGTAGAGAT
CGCCACATTCGTATGGTTGTCATGGCCTCCATTTTCAACGACAAAGTTTA
CATTGACCAAAAGTATGATCTGAAGGGCTCTACCTTCCATCGTTGCGCTT
CTGAGGAGCAGCGCAAGAGCCAAAACGTAACATTGAAGGATCAAGACCTC
AAGAAGCCCATCTTCTTCAGACCAGAGCAACTTGATCTAATAATGAAACA
ACTTGACAAAGATTCGGCGTACTTGGAGTCACATCACGTTATGGATTATT
CCCTGCTAGTTGGTTTGTCACACATGCTTCCGGAAGAAAACCCCTACTTT
AGATCAGAATTTGGTGCCAGTGAGGAGAATGCGCCTTACCACGTCGGATA
TCAACTAGACGATCAAGGTCGTAAGTCAGGCGTTCGCATTTGCCTTGGAA
TCATTGACTTCTTGCAACGCTTTCGCCTACGAAAACGTCTTGAATACGGC
GCACGTGTTCTACAGAGCTGTTCCTGCTCAGCTGCCTCCGTCGCTCCACC
ACACTTATATAAGGACAGATTCATGTCCTTCCTGCGTGAAAAATTTTTGC
CAGACCCCAATCTGGATGTATCAACACTTGAGTCAACCGTCGTCTTCTCA
CCCCTTTCTGCGCACGACAACGAGGACTCGTCGGGAAGCCAAGCGGGCAG
CGGAAGTGATAGGGGAAAGAGCGACAGCAAATCTTAG

protein sequence of Gvermi8009.t1

>Gvermi8009.t1 ID=Gvermi8009.t1|Name=Gvermi8009.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=579bp
MGAATPPDPPPSANSLPLSLHRVASPLTSPSLADPFPPPHSAPADLRLPA
DLFALDQPTSDHTSTSNPLPPHRDNSLDKPPHSAPPALLHARTNRNTMHN
RRPSAAGALTASSHFSKPIEMPPEAAKARLEADAVPANRATLERVQSGNI
DLAHKLSGSTGTNTIKKHVAKFPRIGHGHRKKVKDGQVVFKGHRNWEIVL
SIQFGLKFTSELLDDATDSEPTPDDYEESLAFDFNPNDDRSSVELNTFAR
WVHPAPYVYKLIRQRFGVKESDFLDSTCAESRVREVPTPGKSGALFYITD
DEKYFMKTIQYVEEKMLVSMLPSYYHHVTNNPRTFLTKYLAHFSVQTRRD
RHIRMVVMASIFNDKVYIDQKYDLKGSTFHRCASEEQRKSQNVTLKDQDL
KKPIFFRPEQLDLIMKQLDKDSAYLESHHVMDYSLLVGLSHMLPEENPYF
RSEFGASEENAPYHVGYQLDDQGRKSGVRICLGIIDFLQRFRLRKRLEYG
ARVLQSCSCSAASVAPPHLYKDRFMSFLREKFLPDPNLDVSTLESTVVFS
PLSAHDNEDSSGSQAGSGSDRGKSDSKS*

mRNA from alignment at ScGOVlb_24226:656767..658503+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8009.t1 ID=Gvermi8009.t1|Name=Gvermi8009.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at ScGOVlb_24226:656767..658503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCGCCACTCCGCCGGACCCCCCGCCCTCCGCGAACTCGCTCCC
ACTCTCCCTCCACCGTGTCGCCTCTCCACTCACCTCCCCCTCCCTCGCAG
ACCCCTTCCCCCCCCCGCACTCCGCTCCCGCAGACCTTCGCCTGCCCGCA
GACCTCTTCGCACTGGACCAACCCACGTCGGACCACACTTCCACCTCCAA
CCCCCTCCCTCCTCACCGCGACAATAGCCTCGACAAGCCCCCCCACTCCG
CCCCACCCGCGCTTCTGCACGCCCGAACCAATCGAAACACCATGCACAAC
CGACGCCCAAGCGCCGCCGGCGCCCTCACCGCCTCCAGTCACTTCTCTAA
GCCCATCGAGATGCCCCCCGAGGCAGCCAAGGCGCGCCTCGAAGCCGACG
CAGTGCCCGCCAACCGCGCAACTCTGGAGCGCGTTCAGTCCGGAAACATC
GATCTGGCCCACAAGCTCAGCGGCAGCACCGGCACTAACACCATCAAGAA
GCACGTTGCCAAGTTCCCGCGCATCGGACACGGCCATCGCAAGAAGGTCA
AGGACGGCCAGGTCGTCTTCAAGGGCCATCGCAACTGGGAGATTGTTTTG
TCCATCCAGTTTGGCCTCAAGTTCACGTCGGAGTTGCTTGACGACGCCAC
CGACAGCGAGCCCACCCCAGACGACTACGAGGAAAGTCTAGCCTTCGACT
TCAATCCCAACGACGACCGCTCCTCTGTTGAGCTCAACACCTTTGCCCGT
TGGGTGCATCCGGCCCCCTACGTGTATAAACTCATTCGCCAGCGCTTTGG
CGTCAAGGAAAGCGACTTTCTTGATTCTACCTGCGCTGAGTCCAGAGTGC
GCGAAGTGCCCACTCCGGGAAAGTCCGGCGCCCTCTTCTACATCACTGAT
GACGAAAAGTACTTTATGAAAACCATTCAATATGTGGAAGAGAAGATGTT
AGTCTCCATGCTTCCCTCGTACTATCACCACGTCACCAACAATCCTCGCA
CCTTCCTCACCAAGTACTTGGCCCACTTCAGCGTACAAACCCGTAGAGAT
CGCCACATTCGTATGGTTGTCATGGCCTCCATTTTCAACGACAAAGTTTA
CATTGACCAAAAGTATGATCTGAAGGGCTCTACCTTCCATCGTTGCGCTT
CTGAGGAGCAGCGCAAGAGCCAAAACGTAACATTGAAGGATCAAGACCTC
AAGAAGCCCATCTTCTTCAGACCAGAGCAACTTGATCTAATAATGAAACA
ACTTGACAAAGATTCGGCGTACTTGGAGTCACATCACGTTATGGATTATT
CCCTGCTAGTTGGTTTGTCACACATGCTTCCGGAAGAAAACCCCTACTTT
AGATCAGAATTTGGTGCCAGTGAGGAGAATGCGCCTTACCACGTCGGATA
TCAACTAGACGATCAAGGTCGTAAGTCAGGCGTTCGCATTTGCCTTGGAA
TCATTGACTTCTTGCAACGCTTTCGCCTACGAAAACGTCTTGAATACGGC
GCACGTGTTCTACAGAGCTGTTCCTGCTCAGCTGCCTCCGTCGCTCCACC
ACACTTATATAAGGACAGATTCATGTCCTTCCTGCGTGAAAAATTTTTGC
CAGACCCCAATCTGGATGTATCAACACTTGAGTCAACCGTCGTCTTCTCA
CCCCTTTCTGCGCACGACAACGAGGACTCGTCGGGAAGCCAAGCGGGCAG
CGGAAGTGATAGGGGAAAGAGCGACAGCAAATCTTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:656767..658503+

>Gvermi8009.t1 ID=Gvermi8009.t1|Name=Gvermi8009.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1737bp|location=Sequence derived from alignment at ScGOVlb_24226:656767..658503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCGCCACTCCGCCGGACCCCCCGCCCTCCGCGAACTCGCTCCC
ACTCTCCCTCCACCGTGTCGCCTCTCCACTCACCTCCCCCTCCCTCGCAG
ACCCCTTCCCCCCCCCGCACTCCGCTCCCGCAGACCTTCGCCTGCCCGCA
GACCTCTTCGCACTGGACCAACCCACGTCGGACCACACTTCCACCTCCAA
CCCCCTCCCTCCTCACCGCGACAATAGCCTCGACAAGCCCCCCCACTCCG
CCCCACCCGCGCTTCTGCACGCCCGAACCAATCGAAACACCATGCACAAC
CGACGCCCAAGCGCCGCCGGCGCCCTCACCGCCTCCAGTCACTTCTCTAA
GCCCATCGAGATGCCCCCCGAGGCAGCCAAGGCGCGCCTCGAAGCCGACG
CAGTGCCCGCCAACCGCGCAACTCTGGAGCGCGTTCAGTCCGGAAACATC
GATCTGGCCCACAAGCTCAGCGGCAGCACCGGCACTAACACCATCAAGAA
GCACGTTGCCAAGTTCCCGCGCATCGGACACGGCCATCGCAAGAAGGTCA
AGGACGGCCAGGTCGTCTTCAAGGGCCATCGCAACTGGGAGATTGTTTTG
TCCATCCAGTTTGGCCTCAAGTTCACGTCGGAGTTGCTTGACGACGCCAC
CGACAGCGAGCCCACCCCAGACGACTACGAGGAAAGTCTAGCCTTCGACT
TCAATCCCAACGACGACCGCTCCTCTGTTGAGCTCAACACCTTTGCCCGT
TGGGTGCATCCGGCCCCCTACGTGTATAAACTCATTCGCCAGCGCTTTGG
CGTCAAGGAAAGCGACTTTCTTGATTCTACCTGCGCTGAGTCCAGAGTGC
GCGAAGTGCCCACTCCGGGAAAGTCCGGCGCCCTCTTCTACATCACTGAT
GACGAAAAGTACTTTATGAAAACCATTCAATATGTGGAAGAGAAGATGTT
AGTCTCCATGCTTCCCTCGTACTATCACCACGTCACCAACAATCCTCGCA
CCTTCCTCACCAAGTACTTGGCCCACTTCAGCGTACAAACCCGTAGAGAT
CGCCACATTCGTATGGTTGTCATGGCCTCCATTTTCAACGACAAAGTTTA
CATTGACCAAAAGTATGATCTGAAGGGCTCTACCTTCCATCGTTGCGCTT
CTGAGGAGCAGCGCAAGAGCCAAAACGTAACATTGAAGGATCAAGACCTC
AAGAAGCCCATCTTCTTCAGACCAGAGCAACTTGATCTAATAATGAAACA
ACTTGACAAAGATTCGGCGTACTTGGAGTCACATCACGTTATGGATTATT
CCCTGCTAGTTGGTTTGTCACACATGCTTCCGGAAGAAAACCCCTACTTT
AGATCAGAATTTGGTGCCAGTGAGGAGAATGCGCCTTACCACGTCGGATA
TCAACTAGACGATCAAGGTCGTAAGTCAGGCGTTCGCATTTGCCTTGGAA
TCATTGACTTCTTGCAACGCTTTCGCCTACGAAAACGTCTTGAATACGGC
GCACGTGTTCTACAGAGCTGTTCCTGCTCAGCTGCCTCCGTCGCTCCACC
ACACTTATATAAGGACAGATTCATGTCCTTCCTGCGTGAAAAATTTTTGC
CAGACCCCAATCTGGATGTATCAACACTTGAGTCAACCGTCGTCTTCTCA
CCCCTTTCTGCGCACGACAACGAGGACTCGTCGGGAAGCCAAGCGGGCAG
CGGAAGTGATAGGGGAAAGAGCGACAGCAAATCTTAG