Gvermi8006.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8006.t1
Unique NameGvermi8006.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:617654..619183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8006Gvermi8006Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 617654..619183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8006.t1.start1Gvermi8006.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 617654..617656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8006.t1.CDS1Gvermi8006.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 617654..619183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8006.t1.exon1Gvermi8006.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 617654..619183 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8006.t1.stop1Gvermi8006.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 619181..619183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8006.t1Gvermi8006.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 617654..619183 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8006.t1 ID=Gvermi8006.t1|Name=Gvermi8006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp
MVLVPTSPGTLAVLMGVVELFILESFRFLVSMALAANRSLRLTRFGKLHL
VSAARQNDRWQIYVSVISVMLVVVLIVLELSIDGVPMPSTGSPIQAMCYA
PDRLTRYTGGFGPYTSEADDTRFPVYLEKAGCMNSLLSTALSGTGGLRIG
YPKCTMPFDKPKQRSFVSDFRGCGVGFVGESESGDFHCDVLPTGVANQSM
LAGNSFLGVFESGRNSSSLFKFNAIANQRYLSNARVPHSWMLNNTEQSVS
VDCRDLSLECNELSRERASSAAKSVHTSRASFGIYIQALQNGNSTVCLFE
NGMRSQAWWLEMDQRLPGADERTRRSGPILTGFQVSGEARCVLNLDSLTA
RLHYDATEFASSLPEGNILNWIQRHVVATGIKTPFASSRQCDVVAVIEGS
SMDLGWFIATCILSCAVMLFSVAALMHVLYVRLWCKLKKDPLTPLWPIRE
VIRMREAERHATHAPLVAHGDVFVGVVEKDGVASFDVYANDNFEAVRCSK
KPFMPLFPG*
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spliced messenger RNA

>Gvermi8006.t1 ID=Gvermi8006.t1|Name=Gvermi8006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_24226:617654..619183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTAGTTCCAACCTCCCCTGGCACACTCGCCGTGCTGATGGGGGT
TGTGGAGCTGTTCATCCTTGAGTCGTTTCGATTCTTAGTAAGCATGGCTC
TGGCTGCGAATCGCAGTCTACGACTCACCCGTTTCGGCAAGCTGCATTTG
GTATCTGCCGCACGCCAAAATGATCGCTGGCAGATATATGTCTCAGTCAT
TTCTGTTATGCTCGTGGTTGTTCTCATTGTTCTTGAGTTATCAATTGACG
GTGTGCCCATGCCAAGTACAGGCTCTCCCATCCAAGCTATGTGCTACGCC
CCTGATAGACTGACGAGGTACACCGGCGGATTTGGCCCCTATACATCAGA
AGCTGACGATACTCGATTCCCAGTATATCTTGAGAAAGCAGGCTGTATGA
ATTCGCTGCTCAGCACAGCTCTGAGCGGCACTGGGGGCTTACGGATTGGC
TATCCGAAATGCACTATGCCCTTTGACAAACCAAAGCAGCGTTCATTTGT
TTCTGATTTTCGAGGTTGTGGCGTCGGATTCGTCGGGGAGAGCGAAAGTG
GGGACTTTCATTGCGATGTGTTACCTACGGGAGTTGCCAATCAATCGATG
CTTGCAGGAAACAGCTTCCTGGGTGTCTTTGAAAGCGGGCGTAACTCCTC
TTCCCTTTTCAAGTTTAACGCCATCGCCAATCAGCGATATCTGTCAAACG
CCCGCGTTCCACATTCCTGGATGCTGAACAACACTGAGCAGTCCGTATCA
GTTGATTGCCGCGACCTCAGTCTCGAGTGCAACGAACTTTCACGTGAGCG
TGCGAGCAGCGCCGCGAAGTCTGTCCACACGAGCAGAGCCTCCTTTGGTA
TTTACATTCAGGCACTGCAGAATGGGAACTCAACCGTGTGCTTATTTGAG
AACGGAATGCGTTCGCAAGCGTGGTGGCTGGAGATGGATCAGAGACTGCC
AGGTGCAGATGAACGAACAAGACGATCCGGTCCAATTTTAACAGGTTTTC
AAGTGAGTGGTGAGGCTAGATGCGTTTTGAATCTAGATTCGTTGACTGCT
CGGCTGCACTATGATGCCACAGAGTTCGCATCATCTCTCCCAGAGGGAAA
TATCCTAAACTGGATACAGCGGCATGTGGTAGCCACTGGAATTAAAACGC
CCTTCGCAAGTTCAAGACAATGCGATGTTGTTGCCGTGATTGAGGGTAGC
TCCATGGATCTGGGATGGTTTATTGCTACATGCATCTTGAGCTGTGCTGT
GATGTTGTTTTCAGTAGCAGCTCTCATGCACGTACTTTATGTGAGGTTGT
GGTGCAAGTTGAAGAAAGACCCTCTTACGCCATTGTGGCCGATTCGCGAA
GTCATTCGCATGCGCGAAGCTGAAAGACATGCGACACATGCACCACTCGT
GGCGCACGGAGACGTGTTTGTCGGCGTGGTAGAGAAGGACGGGGTTGCAT
CGTTTGATGTATACGCGAACGACAACTTTGAGGCGGTTCGTTGCTCAAAG
AAGCCATTCATGCCACTCTTTCCTGGATAA
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protein sequence of Gvermi8006.t1

>Gvermi8006.t1 ID=Gvermi8006.t1|Name=Gvermi8006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=510bp
MVLVPTSPGTLAVLMGVVELFILESFRFLVSMALAANRSLRLTRFGKLHL
VSAARQNDRWQIYVSVISVMLVVVLIVLELSIDGVPMPSTGSPIQAMCYA
PDRLTRYTGGFGPYTSEADDTRFPVYLEKAGCMNSLLSTALSGTGGLRIG
YPKCTMPFDKPKQRSFVSDFRGCGVGFVGESESGDFHCDVLPTGVANQSM
LAGNSFLGVFESGRNSSSLFKFNAIANQRYLSNARVPHSWMLNNTEQSVS
VDCRDLSLECNELSRERASSAAKSVHTSRASFGIYIQALQNGNSTVCLFE
NGMRSQAWWLEMDQRLPGADERTRRSGPILTGFQVSGEARCVLNLDSLTA
RLHYDATEFASSLPEGNILNWIQRHVVATGIKTPFASSRQCDVVAVIEGS
SMDLGWFIATCILSCAVMLFSVAALMHVLYVRLWCKLKKDPLTPLWPIRE
VIRMREAERHATHAPLVAHGDVFVGVVEKDGVASFDVYANDNFEAVRCSK
KPFMPLFPG*
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mRNA from alignment at ScGOVlb_24226:617654..619183+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8006.t1 ID=Gvermi8006.t1|Name=Gvermi8006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_24226:617654..619183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTACTAGTTCCAACCTCCCCTGGCACACTCGCCGTGCTGATGGGGGT
TGTGGAGCTGTTCATCCTTGAGTCGTTTCGATTCTTAGTAAGCATGGCTC
TGGCTGCGAATCGCAGTCTACGACTCACCCGTTTCGGCAAGCTGCATTTG
GTATCTGCCGCACGCCAAAATGATCGCTGGCAGATATATGTCTCAGTCAT
TTCTGTTATGCTCGTGGTTGTTCTCATTGTTCTTGAGTTATCAATTGACG
GTGTGCCCATGCCAAGTACAGGCTCTCCCATCCAAGCTATGTGCTACGCC
CCTGATAGACTGACGAGGTACACCGGCGGATTTGGCCCCTATACATCAGA
AGCTGACGATACTCGATTCCCAGTATATCTTGAGAAAGCAGGCTGTATGA
ATTCGCTGCTCAGCACAGCTCTGAGCGGCACTGGGGGCTTACGGATTGGC
TATCCGAAATGCACTATGCCCTTTGACAAACCAAAGCAGCGTTCATTTGT
TTCTGATTTTCGAGGTTGTGGCGTCGGATTCGTCGGGGAGAGCGAAAGTG
GGGACTTTCATTGCGATGTGTTACCTACGGGAGTTGCCAATCAATCGATG
CTTGCAGGAAACAGCTTCCTGGGTGTCTTTGAAAGCGGGCGTAACTCCTC
TTCCCTTTTCAAGTTTAACGCCATCGCCAATCAGCGATATCTGTCAAACG
CCCGCGTTCCACATTCCTGGATGCTGAACAACACTGAGCAGTCCGTATCA
GTTGATTGCCGCGACCTCAGTCTCGAGTGCAACGAACTTTCACGTGAGCG
TGCGAGCAGCGCCGCGAAGTCTGTCCACACGAGCAGAGCCTCCTTTGGTA
TTTACATTCAGGCACTGCAGAATGGGAACTCAACCGTGTGCTTATTTGAG
AACGGAATGCGTTCGCAAGCGTGGTGGCTGGAGATGGATCAGAGACTGCC
AGGTGCAGATGAACGAACAAGACGATCCGGTCCAATTTTAACAGGTTTTC
AAGTGAGTGGTGAGGCTAGATGCGTTTTGAATCTAGATTCGTTGACTGCT
CGGCTGCACTATGATGCCACAGAGTTCGCATCATCTCTCCCAGAGGGAAA
TATCCTAAACTGGATACAGCGGCATGTGGTAGCCACTGGAATTAAAACGC
CCTTCGCAAGTTCAAGACAATGCGATGTTGTTGCCGTGATTGAGGGTAGC
TCCATGGATCTGGGATGGTTTATTGCTACATGCATCTTGAGCTGTGCTGT
GATGTTGTTTTCAGTAGCAGCTCTCATGCACGTACTTTATGTGAGGTTGT
GGTGCAAGTTGAAGAAAGACCCTCTTACGCCATTGTGGCCGATTCGCGAA
GTCATTCGCATGCGCGAAGCTGAAAGACATGCGACACATGCACCACTCGT
GGCGCACGGAGACGTGTTTGTCGGCGTGGTAGAGAAGGACGGGGTTGCAT
CGTTTGATGTATACGCGAACGACAACTTTGAGGCGGTTCGTTGCTCAAAG
AAGCCATTCATGCCACTCTTTCCTGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:617654..619183+

>Gvermi8006.t1 ID=Gvermi8006.t1|Name=Gvermi8006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1530bp|location=Sequence derived from alignment at ScGOVlb_24226:617654..619183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTACTAGTTCCAACCTCCCCTGGCACACTCGCCGTGCTGATGGGGGT
TGTGGAGCTGTTCATCCTTGAGTCGTTTCGATTCTTAGTAAGCATGGCTC
TGGCTGCGAATCGCAGTCTACGACTCACCCGTTTCGGCAAGCTGCATTTG
GTATCTGCCGCACGCCAAAATGATCGCTGGCAGATATATGTCTCAGTCAT
TTCTGTTATGCTCGTGGTTGTTCTCATTGTTCTTGAGTTATCAATTGACG
GTGTGCCCATGCCAAGTACAGGCTCTCCCATCCAAGCTATGTGCTACGCC
CCTGATAGACTGACGAGGTACACCGGCGGATTTGGCCCCTATACATCAGA
AGCTGACGATACTCGATTCCCAGTATATCTTGAGAAAGCAGGCTGTATGA
ATTCGCTGCTCAGCACAGCTCTGAGCGGCACTGGGGGCTTACGGATTGGC
TATCCGAAATGCACTATGCCCTTTGACAAACCAAAGCAGCGTTCATTTGT
TTCTGATTTTCGAGGTTGTGGCGTCGGATTCGTCGGGGAGAGCGAAAGTG
GGGACTTTCATTGCGATGTGTTACCTACGGGAGTTGCCAATCAATCGATG
CTTGCAGGAAACAGCTTCCTGGGTGTCTTTGAAAGCGGGCGTAACTCCTC
TTCCCTTTTCAAGTTTAACGCCATCGCCAATCAGCGATATCTGTCAAACG
CCCGCGTTCCACATTCCTGGATGCTGAACAACACTGAGCAGTCCGTATCA
GTTGATTGCCGCGACCTCAGTCTCGAGTGCAACGAACTTTCACGTGAGCG
TGCGAGCAGCGCCGCGAAGTCTGTCCACACGAGCAGAGCCTCCTTTGGTA
TTTACATTCAGGCACTGCAGAATGGGAACTCAACCGTGTGCTTATTTGAG
AACGGAATGCGTTCGCAAGCGTGGTGGCTGGAGATGGATCAGAGACTGCC
AGGTGCAGATGAACGAACAAGACGATCCGGTCCAATTTTAACAGGTTTTC
AAGTGAGTGGTGAGGCTAGATGCGTTTTGAATCTAGATTCGTTGACTGCT
CGGCTGCACTATGATGCCACAGAGTTCGCATCATCTCTCCCAGAGGGAAA
TATCCTAAACTGGATACAGCGGCATGTGGTAGCCACTGGAATTAAAACGC
CCTTCGCAAGTTCAAGACAATGCGATGTTGTTGCCGTGATTGAGGGTAGC
TCCATGGATCTGGGATGGTTTATTGCTACATGCATCTTGAGCTGTGCTGT
GATGTTGTTTTCAGTAGCAGCTCTCATGCACGTACTTTATGTGAGGTTGT
GGTGCAAGTTGAAGAAAGACCCTCTTACGCCATTGTGGCCGATTCGCGAA
GTCATTCGCATGCGCGAAGCTGAAAGACATGCGACACATGCACCACTCGT
GGCGCACGGAGACGTGTTTGTCGGCGTGGTAGAGAAGGACGGGGTTGCAT
CGTTTGATGTATACGCGAACGACAACTTTGAGGCGGTTCGTTGCTCAAAG
AAGCCATTCATGCCACTCTTTCCTGGATAA
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