Gvermi8004.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8004.t1
Unique NameGvermi8004.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length763
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:611986..614274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8004Gvermi8004Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 611986..614274 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8004.t1.stop1Gvermi8004.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 611986..611988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8004.t1.CDS1Gvermi8004.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 611986..614274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8004.t1.exon1Gvermi8004.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 611986..614274 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8004.t1.start1Gvermi8004.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 614272..614274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8004.t1Gvermi8004.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 611986..614274 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8004.t1 ID=Gvermi8004.t1|Name=Gvermi8004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=763bp
MRLFACFTRSNAVDSPPRLHTQPSSNRPTRDPTPHDNFVPTSIPELHPEY
AHAEPYRFAARTQSARLLVEKQREAQALSMSPRRQPSVEQNTVVVRGPAY
NAQSDPPALPTSPSAPNVPVKPPRPVSLKVETPTTADDNYADSDDTTAGR
DENADHNRSAASHRSPRRKSSASNAASSPSKSKHKSKLKSKSRRNNSNAQ
PKPSSFRIRSKSAKSLKHSKRRASAHRRTESQPSGSLSDIIASESVSRIP
TSVTNSTLPSPPGSDFEAPHDSSFIEDHIRPHLDNTPPELLEPIPVPRMS
AAFHAKHSGSPAISTDSWGPQDSSSVRRYEDVEGDSSSGIISVPPVGKQK
VVHMANYPSRAPELPSYAPPSPLHTSSPSVSNRVRSKRKSKPFVPESSDS
DGALLLDESVPPAELPIDPFPLSKSRRSIMSNDPAPTREIPRIVHKAAHD
RIHSDESFPPPAPSQTMASNQPQSIMRRASSGKRKTVSFHTAAPTVIEPK
LRAPSYSVPRDAMLSREEVRPEVPAKLAPALRKTRDSVKFASSSLPRLHE
RIDDFTPSAEAYSNNHINMARSISAHNFTPKETASHPDFLRPEAVQTGAA
RTSQTMPRANASLSVVEDSSAPNDRSMSDFSAGSDESFIARASRRMSSRV
VKDREELREASRRQSRAVADAMASQIRGVPKSAMLAFSENDVVLADSFAD
DKSSSRTSLRRSSRKVKSIQVPSIQPGVVPKPPPPPPFGPPPRRSRSMRA
PPPPPISPLPHQ*
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spliced messenger RNA

>Gvermi8004.t1 ID=Gvermi8004.t1|Name=Gvermi8004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2289bp|location=Sequence derived from alignment at ScGOVlb_24226:611986..614274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCTTCGCGTGCTTCACTCGCTCCAATGCTGTAGACTCCCCGCC
TCGACTCCACACCCAACCATCTTCTAACCGCCCGACTCGAGACCCAACCC
CCCACGACAACTTCGTCCCCACCTCCATCCCCGAGCTGCACCCCGAGTAT
GCCCATGCCGAGCCTTACCGCTTTGCCGCCCGCACCCAAAGCGCCCGCTT
GCTAGTCGAGAAGCAACGCGAAGCGCAAGCGCTATCTATGTCCCCCCGCC
GCCAACCCTCTGTCGAACAGAACACCGTCGTCGTCCGCGGCCCCGCATAC
AACGCTCAAAGCGACCCACCCGCTCTTCCAACCTCGCCATCCGCTCCAAA
TGTCCCCGTCAAACCTCCTCGTCCGGTTTCGCTCAAGGTTGAGACCCCGA
CAACAGCCGATGATAATTACGCCGACAGTGACGATACCACAGCCGGCCGC
GATGAAAACGCTGACCACAACCGATCCGCTGCCTCGCATCGTTCCCCGCG
TCGAAAGTCCTCTGCTTCAAACGCTGCCTCTAGTCCGTCAAAGTCCAAGC
ACAAGAGCAAGTTAAAGTCAAAGAGCCGCCGGAACAATTCAAACGCCCAG
CCGAAACCGAGCTCATTCCGCATTCGTTCCAAGTCAGCAAAGTCTTTGAA
GCACAGCAAACGAAGAGCGTCCGCTCACAGGCGCACAGAGTCCCAACCGT
CAGGCTCCTTGTCGGATATTATTGCATCGGAGTCTGTTTCCCGTATTCCG
ACGTCTGTCACAAATTCTACCCTCCCGTCTCCCCCGGGTTCGGATTTTGA
GGCCCCTCATGATTCCTCTTTCATTGAGGATCACATCCGACCGCACCTGG
ACAATACGCCCCCGGAATTGCTAGAGCCCATTCCCGTCCCGCGAATGAGC
GCTGCCTTTCATGCCAAGCACTCAGGTTCTCCCGCTATCTCAACCGATTC
ATGGGGACCACAAGATTCATCCTCAGTGCGTCGCTATGAGGACGTCGAGG
GTGACTCCTCTTCAGGTATAATATCTGTTCCTCCTGTCGGTAAGCAAAAG
GTGGTACACATGGCTAATTATCCGTCTAGAGCACCGGAGCTGCCCTCCTA
TGCTCCTCCATCTCCTCTGCATACGTCCTCTCCTTCTGTGTCCAATCGAG
TGCGCTCTAAGCGAAAGAGCAAGCCATTCGTCCCCGAGAGTTCAGATTCG
GACGGAGCTTTACTTCTTGACGAGAGTGTGCCTCCGGCCGAATTGCCCAT
TGATCCGTTTCCGCTGTCAAAGTCTAGGCGATCCATCATGTCCAACGACC
CTGCGCCGACCCGGGAGATTCCGAGGATAGTTCACAAAGCCGCTCACGAC
CGCATTCATTCAGACGAATCGTTTCCACCACCAGCGCCATCGCAAACAAT
GGCAAGCAACCAGCCTCAGAGTATAATGCGCCGTGCATCTTCGGGGAAAC
GCAAGACAGTCAGCTTCCATACCGCCGCCCCCACTGTGATAGAGCCTAAG
CTGCGCGCTCCTAGTTATTCTGTGCCGCGAGATGCCATGCTGTCTCGCGA
AGAAGTGCGACCCGAAGTTCCAGCCAAGCTTGCTCCAGCTCTACGTAAGA
CTCGCGATTCTGTTAAGTTCGCATCTTCGTCTTTGCCTCGCCTCCATGAA
CGCATCGATGACTTCACTCCGTCAGCAGAAGCATACTCTAACAATCATAT
CAATATGGCTCGATCGATCTCCGCGCACAACTTTACACCGAAGGAAACTG
CCTCTCACCCCGACTTTCTGCGTCCGGAAGCAGTTCAGACTGGTGCGGCG
CGAACTAGTCAGACCATGCCCAGAGCCAACGCCTCTCTTTCCGTAGTAGA
GGACAGTTCGGCCCCTAACGACCGAAGCATGAGCGACTTTAGCGCAGGCT
CTGATGAAAGCTTCATCGCGAGAGCCTCTCGCCGTATGTCATCTCGAGTG
GTCAAAGATCGTGAAGAACTTCGTGAAGCATCCCGTCGCCAGTCCAGAGC
CGTTGCGGATGCAATGGCCTCACAAATTCGAGGTGTTCCGAAGAGCGCCA
TGCTTGCCTTCTCAGAGAACGATGTTGTTTTGGCAGATAGTTTCGCGGAT
GATAAATCCTCCAGCCGCACCTCACTCAGGAGGAGCTCAAGGAAAGTGAA
GAGCATACAAGTGCCGTCGATTCAGCCAGGTGTCGTCCCGAAGCCACCGC
CACCACCGCCATTTGGACCGCCACCTAGGCGTTCGAGGAGTATGCGTGCG
CCGCCGCCCCCACCGATATCGCCATTGCCCCATCAGTAA
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protein sequence of Gvermi8004.t1

>Gvermi8004.t1 ID=Gvermi8004.t1|Name=Gvermi8004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=763bp
MRLFACFTRSNAVDSPPRLHTQPSSNRPTRDPTPHDNFVPTSIPELHPEY
AHAEPYRFAARTQSARLLVEKQREAQALSMSPRRQPSVEQNTVVVRGPAY
NAQSDPPALPTSPSAPNVPVKPPRPVSLKVETPTTADDNYADSDDTTAGR
DENADHNRSAASHRSPRRKSSASNAASSPSKSKHKSKLKSKSRRNNSNAQ
PKPSSFRIRSKSAKSLKHSKRRASAHRRTESQPSGSLSDIIASESVSRIP
TSVTNSTLPSPPGSDFEAPHDSSFIEDHIRPHLDNTPPELLEPIPVPRMS
AAFHAKHSGSPAISTDSWGPQDSSSVRRYEDVEGDSSSGIISVPPVGKQK
VVHMANYPSRAPELPSYAPPSPLHTSSPSVSNRVRSKRKSKPFVPESSDS
DGALLLDESVPPAELPIDPFPLSKSRRSIMSNDPAPTREIPRIVHKAAHD
RIHSDESFPPPAPSQTMASNQPQSIMRRASSGKRKTVSFHTAAPTVIEPK
LRAPSYSVPRDAMLSREEVRPEVPAKLAPALRKTRDSVKFASSSLPRLHE
RIDDFTPSAEAYSNNHINMARSISAHNFTPKETASHPDFLRPEAVQTGAA
RTSQTMPRANASLSVVEDSSAPNDRSMSDFSAGSDESFIARASRRMSSRV
VKDREELREASRRQSRAVADAMASQIRGVPKSAMLAFSENDVVLADSFAD
DKSSSRTSLRRSSRKVKSIQVPSIQPGVVPKPPPPPPFGPPPRRSRSMRA
PPPPPISPLPHQ*
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mRNA from alignment at ScGOVlb_24226:611986..614274-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8004.t1 ID=Gvermi8004.t1|Name=Gvermi8004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2289bp|location=Sequence derived from alignment at ScGOVlb_24226:611986..614274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTCTTCGCGTGCTTCACTCGCTCCAATGCTGTAGACTCCCCGCC
TCGACTCCACACCCAACCATCTTCTAACCGCCCGACTCGAGACCCAACCC
CCCACGACAACTTCGTCCCCACCTCCATCCCCGAGCTGCACCCCGAGTAT
GCCCATGCCGAGCCTTACCGCTTTGCCGCCCGCACCCAAAGCGCCCGCTT
GCTAGTCGAGAAGCAACGCGAAGCGCAAGCGCTATCTATGTCCCCCCGCC
GCCAACCCTCTGTCGAACAGAACACCGTCGTCGTCCGCGGCCCCGCATAC
AACGCTCAAAGCGACCCACCCGCTCTTCCAACCTCGCCATCCGCTCCAAA
TGTCCCCGTCAAACCTCCTCGTCCGGTTTCGCTCAAGGTTGAGACCCCGA
CAACAGCCGATGATAATTACGCCGACAGTGACGATACCACAGCCGGCCGC
GATGAAAACGCTGACCACAACCGATCCGCTGCCTCGCATCGTTCCCCGCG
TCGAAAGTCCTCTGCTTCAAACGCTGCCTCTAGTCCGTCAAAGTCCAAGC
ACAAGAGCAAGTTAAAGTCAAAGAGCCGCCGGAACAATTCAAACGCCCAG
CCGAAACCGAGCTCATTCCGCATTCGTTCCAAGTCAGCAAAGTCTTTGAA
GCACAGCAAACGAAGAGCGTCCGCTCACAGGCGCACAGAGTCCCAACCGT
CAGGCTCCTTGTCGGATATTATTGCATCGGAGTCTGTTTCCCGTATTCCG
ACGTCTGTCACAAATTCTACCCTCCCGTCTCCCCCGGGTTCGGATTTTGA
GGCCCCTCATGATTCCTCTTTCATTGAGGATCACATCCGACCGCACCTGG
ACAATACGCCCCCGGAATTGCTAGAGCCCATTCCCGTCCCGCGAATGAGC
GCTGCCTTTCATGCCAAGCACTCAGGTTCTCCCGCTATCTCAACCGATTC
ATGGGGACCACAAGATTCATCCTCAGTGCGTCGCTATGAGGACGTCGAGG
GTGACTCCTCTTCAGGTATAATATCTGTTCCTCCTGTCGGTAAGCAAAAG
GTGGTACACATGGCTAATTATCCGTCTAGAGCACCGGAGCTGCCCTCCTA
TGCTCCTCCATCTCCTCTGCATACGTCCTCTCCTTCTGTGTCCAATCGAG
TGCGCTCTAAGCGAAAGAGCAAGCCATTCGTCCCCGAGAGTTCAGATTCG
GACGGAGCTTTACTTCTTGACGAGAGTGTGCCTCCGGCCGAATTGCCCAT
TGATCCGTTTCCGCTGTCAAAGTCTAGGCGATCCATCATGTCCAACGACC
CTGCGCCGACCCGGGAGATTCCGAGGATAGTTCACAAAGCCGCTCACGAC
CGCATTCATTCAGACGAATCGTTTCCACCACCAGCGCCATCGCAAACAAT
GGCAAGCAACCAGCCTCAGAGTATAATGCGCCGTGCATCTTCGGGGAAAC
GCAAGACAGTCAGCTTCCATACCGCCGCCCCCACTGTGATAGAGCCTAAG
CTGCGCGCTCCTAGTTATTCTGTGCCGCGAGATGCCATGCTGTCTCGCGA
AGAAGTGCGACCCGAAGTTCCAGCCAAGCTTGCTCCAGCTCTACGTAAGA
CTCGCGATTCTGTTAAGTTCGCATCTTCGTCTTTGCCTCGCCTCCATGAA
CGCATCGATGACTTCACTCCGTCAGCAGAAGCATACTCTAACAATCATAT
CAATATGGCTCGATCGATCTCCGCGCACAACTTTACACCGAAGGAAACTG
CCTCTCACCCCGACTTTCTGCGTCCGGAAGCAGTTCAGACTGGTGCGGCG
CGAACTAGTCAGACCATGCCCAGAGCCAACGCCTCTCTTTCCGTAGTAGA
GGACAGTTCGGCCCCTAACGACCGAAGCATGAGCGACTTTAGCGCAGGCT
CTGATGAAAGCTTCATCGCGAGAGCCTCTCGCCGTATGTCATCTCGAGTG
GTCAAAGATCGTGAAGAACTTCGTGAAGCATCCCGTCGCCAGTCCAGAGC
CGTTGCGGATGCAATGGCCTCACAAATTCGAGGTGTTCCGAAGAGCGCCA
TGCTTGCCTTCTCAGAGAACGATGTTGTTTTGGCAGATAGTTTCGCGGAT
GATAAATCCTCCAGCCGCACCTCACTCAGGAGGAGCTCAAGGAAAGTGAA
GAGCATACAAGTGCCGTCGATTCAGCCAGGTGTCGTCCCGAAGCCACCGC
CACCACCGCCATTTGGACCGCCACCTAGGCGTTCGAGGAGTATGCGTGCG
CCGCCGCCCCCACCGATATCGCCATTGCCCCATCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:611986..614274-

>Gvermi8004.t1 ID=Gvermi8004.t1|Name=Gvermi8004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2289bp|location=Sequence derived from alignment at ScGOVlb_24226:611986..614274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTCTTCGCGTGCTTCACTCGCTCCAATGCTGTAGACTCCCCGCC
TCGACTCCACACCCAACCATCTTCTAACCGCCCGACTCGAGACCCAACCC
CCCACGACAACTTCGTCCCCACCTCCATCCCCGAGCTGCACCCCGAGTAT
GCCCATGCCGAGCCTTACCGCTTTGCCGCCCGCACCCAAAGCGCCCGCTT
GCTAGTCGAGAAGCAACGCGAAGCGCAAGCGCTATCTATGTCCCCCCGCC
GCCAACCCTCTGTCGAACAGAACACCGTCGTCGTCCGCGGCCCCGCATAC
AACGCTCAAAGCGACCCACCCGCTCTTCCAACCTCGCCATCCGCTCCAAA
TGTCCCCGTCAAACCTCCTCGTCCGGTTTCGCTCAAGGTTGAGACCCCGA
CAACAGCCGATGATAATTACGCCGACAGTGACGATACCACAGCCGGCCGC
GATGAAAACGCTGACCACAACCGATCCGCTGCCTCGCATCGTTCCCCGCG
TCGAAAGTCCTCTGCTTCAAACGCTGCCTCTAGTCCGTCAAAGTCCAAGC
ACAAGAGCAAGTTAAAGTCAAAGAGCCGCCGGAACAATTCAAACGCCCAG
CCGAAACCGAGCTCATTCCGCATTCGTTCCAAGTCAGCAAAGTCTTTGAA
GCACAGCAAACGAAGAGCGTCCGCTCACAGGCGCACAGAGTCCCAACCGT
CAGGCTCCTTGTCGGATATTATTGCATCGGAGTCTGTTTCCCGTATTCCG
ACGTCTGTCACAAATTCTACCCTCCCGTCTCCCCCGGGTTCGGATTTTGA
GGCCCCTCATGATTCCTCTTTCATTGAGGATCACATCCGACCGCACCTGG
ACAATACGCCCCCGGAATTGCTAGAGCCCATTCCCGTCCCGCGAATGAGC
GCTGCCTTTCATGCCAAGCACTCAGGTTCTCCCGCTATCTCAACCGATTC
ATGGGGACCACAAGATTCATCCTCAGTGCGTCGCTATGAGGACGTCGAGG
GTGACTCCTCTTCAGGTATAATATCTGTTCCTCCTGTCGGTAAGCAAAAG
GTGGTACACATGGCTAATTATCCGTCTAGAGCACCGGAGCTGCCCTCCTA
TGCTCCTCCATCTCCTCTGCATACGTCCTCTCCTTCTGTGTCCAATCGAG
TGCGCTCTAAGCGAAAGAGCAAGCCATTCGTCCCCGAGAGTTCAGATTCG
GACGGAGCTTTACTTCTTGACGAGAGTGTGCCTCCGGCCGAATTGCCCAT
TGATCCGTTTCCGCTGTCAAAGTCTAGGCGATCCATCATGTCCAACGACC
CTGCGCCGACCCGGGAGATTCCGAGGATAGTTCACAAAGCCGCTCACGAC
CGCATTCATTCAGACGAATCGTTTCCACCACCAGCGCCATCGCAAACAAT
GGCAAGCAACCAGCCTCAGAGTATAATGCGCCGTGCATCTTCGGGGAAAC
GCAAGACAGTCAGCTTCCATACCGCCGCCCCCACTGTGATAGAGCCTAAG
CTGCGCGCTCCTAGTTATTCTGTGCCGCGAGATGCCATGCTGTCTCGCGA
AGAAGTGCGACCCGAAGTTCCAGCCAAGCTTGCTCCAGCTCTACGTAAGA
CTCGCGATTCTGTTAAGTTCGCATCTTCGTCTTTGCCTCGCCTCCATGAA
CGCATCGATGACTTCACTCCGTCAGCAGAAGCATACTCTAACAATCATAT
CAATATGGCTCGATCGATCTCCGCGCACAACTTTACACCGAAGGAAACTG
CCTCTCACCCCGACTTTCTGCGTCCGGAAGCAGTTCAGACTGGTGCGGCG
CGAACTAGTCAGACCATGCCCAGAGCCAACGCCTCTCTTTCCGTAGTAGA
GGACAGTTCGGCCCCTAACGACCGAAGCATGAGCGACTTTAGCGCAGGCT
CTGATGAAAGCTTCATCGCGAGAGCCTCTCGCCGTATGTCATCTCGAGTG
GTCAAAGATCGTGAAGAACTTCGTGAAGCATCCCGTCGCCAGTCCAGAGC
CGTTGCGGATGCAATGGCCTCACAAATTCGAGGTGTTCCGAAGAGCGCCA
TGCTTGCCTTCTCAGAGAACGATGTTGTTTTGGCAGATAGTTTCGCGGAT
GATAAATCCTCCAGCCGCACCTCACTCAGGAGGAGCTCAAGGAAAGTGAA
GAGCATACAAGTGCCGTCGATTCAGCCAGGTGTCGTCCCGAAGCCACCGC
CACCACCGCCATTTGGACCGCCACCTAGGCGTTCGAGGAGTATGCGTGCG
CCGCCGCCCCCACCGATATCGCCATTGCCCCATCAGTAA
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