Gvermi7993.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7993.t1
Unique NameGvermi7993.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length613
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:540259..542097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog411154.GFO_1728
PFAMsGlyco_hydro_16
Max annot lvl976|Bacteroidetes
Evalue4.26e-07
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,4NVAB@976|Bacteroidetes,1I7ZY@117743|Flavobacteriia
DescriptionGlycosyl hydrolases family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7993Gvermi7993Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 540259..542097 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7993.t1.stop1Gvermi7993.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 540259..540261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7993.t1.CDS1Gvermi7993.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 540259..542097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7993.t1.exon1Gvermi7993.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 540259..542097 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7993.t1.start1Gvermi7993.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 542095..542097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7993.t1Gvermi7993.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 540259..542097 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7993.t1 ID=Gvermi7993.t1|Name=Gvermi7993.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=613bp
MSFLLRAVIVAVIALSASVSTALPKPDVPWRDLAVFKYDFRISDEFSGNR
LDLSKWDPHGKRNPDTQCPNWNGPPSSSQPQWSTFFPTTTDPDGGPAERF
YEVANGRLRLRTDSKPLEYFQKREYYCDATTFKCNHNDQIDCFSTDYNGV
PFYKDAEKTQYAGVTHDKCKIEPYCIPHPQFVTGKPRVYSRMVGAHLTSK
RSFKYGFFEAEVQLGDNPAVAAVWMHDDQMVNGYCRYVQNSDPNSDRDRL
LECPSAIRSRRWQEIDMLEAMNSAIHQQLYIPNIHAFAGYKGEFTSENAV
DKGDGNMGGGPILVKKSVFNENNPSFSDVSQAEQLANDWHFSSGSVHTLD
APWSAKRRRIGLYWSPKEIRFLIDGVEVQRMRNTIIHQPMLFDLSYSYNV
QWARETPSSEQVARPFEIMYVRRWDVYTADGLDPPSDLPLNEKMSGFGNY
YGEQLLGMFQRFPANDDKTFSEVFDEQDTIQNIRDSILSSASSSSDKLAP
VQRAAFNLHTGERDYVLGARSVNETMFTVRQGQRFKRAGGVGNARFSRAR
DKLTAAQRRIALSYKSRSAAVANGRAARLQDPETTVFEFANPQKNGAGWA
TRDGLGTDGSLA*
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spliced messenger RNA

>Gvermi7993.t1 ID=Gvermi7993.t1|Name=Gvermi7993.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at ScGOVlb_24226:540259..542097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCCTACTCCGCGCGGTGATCGTCGCTGTGATTGCGCTCTCCGC
CAGCGTGTCAACTGCCCTACCCAAGCCAGACGTTCCCTGGCGTGACTTGG
CCGTCTTCAAATATGACTTCAGGATATCTGATGAGTTCAGCGGCAATCGC
CTCGACCTCTCAAAATGGGACCCCCACGGCAAAAGAAATCCAGACACTCA
ATGTCCTAACTGGAACGGACCCCCCTCATCTTCTCAACCTCAATGGTCCA
CATTCTTCCCCACGACCACAGACCCGGACGGCGGCCCAGCAGAGCGTTTT
TACGAGGTGGCCAACGGCCGACTCAGACTTCGCACAGACAGCAAACCGCT
CGAATACTTTCAGAAACGCGAGTACTACTGTGACGCCACCACATTCAAAT
GCAACCACAACGACCAGATTGACTGCTTTTCCACAGATTACAATGGCGTC
CCGTTCTACAAAGACGCTGAAAAGACACAGTACGCCGGTGTGACGCACGA
CAAGTGCAAGATTGAGCCGTACTGCATCCCACACCCGCAGTTTGTGACTG
GCAAGCCGCGCGTGTACAGCCGCATGGTCGGCGCGCACCTCACTTCCAAG
AGGTCGTTCAAGTACGGCTTCTTCGAGGCCGAAGTGCAGCTTGGCGACAA
TCCTGCCGTTGCCGCAGTGTGGATGCATGACGATCAAATGGTCAATGGTT
ACTGTCGGTATGTGCAAAACAGCGATCCTAACAGTGACAGAGATCGTCTA
TTGGAGTGCCCGAGCGCGATCCGTTCGCGCCGTTGGCAGGAGATTGACAT
GCTGGAGGCGATGAATAGCGCCATTCACCAGCAGCTCTACATTCCAAACA
TCCATGCATTCGCCGGATACAAAGGCGAGTTCACGAGCGAGAATGCGGTG
GACAAAGGAGATGGCAACATGGGCGGCGGGCCCATTCTGGTGAAGAAGTC
GGTGTTCAATGAAAACAACCCCAGTTTCAGCGATGTGAGCCAGGCGGAGC
AATTGGCCAACGACTGGCACTTTAGTTCGGGATCGGTGCACACTTTGGAT
GCACCGTGGAGTGCCAAGCGTCGACGCATTGGTCTATACTGGTCGCCAAA
GGAAATCCGATTCCTCATCGACGGGGTGGAAGTGCAACGCATGCGCAACA
CGATCATTCATCAACCGATGTTGTTCGACTTGTCGTACTCGTACAACGTG
CAATGGGCACGAGAAACACCGAGTTCGGAACAGGTAGCGCGCCCGTTTGA
AATCATGTACGTTCGACGGTGGGACGTGTACACTGCGGATGGGCTAGATC
CACCAAGCGATCTGCCTCTCAACGAGAAGATGAGCGGCTTTGGGAACTAC
TACGGGGAGCAGCTGTTGGGCATGTTCCAGCGATTCCCAGCAAACGACGA
CAAGACTTTTTCGGAGGTGTTCGACGAACAGGATACAATCCAGAACATTC
GGGACTCTATCCTGAGCTCTGCGTCGTCCTCCAGTGACAAGCTGGCGCCG
GTGCAACGGGCGGCGTTCAATCTGCACACGGGAGAGCGGGACTATGTGCT
GGGGGCGCGAAGTGTGAACGAGACGATGTTCACGGTGCGGCAGGGGCAAC
GCTTCAAGCGCGCTGGCGGGGTGGGAAACGCGCGCTTCTCCAGGGCGCGC
GACAAGCTCACCGCGGCGCAGCGGCGCATCGCGCTCAGCTACAAGTCGCG
CTCGGCGGCGGTGGCGAACGGCAGAGCGGCACGGCTACAGGATCCGGAGA
CGACTGTGTTCGAGTTCGCAAACCCGCAGAAAAATGGCGCGGGTTGGGCT
ACTCGCGACGGTCTGGGGACGGACGGAAGCCTGGCGTGA
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protein sequence of Gvermi7993.t1

>Gvermi7993.t1 ID=Gvermi7993.t1|Name=Gvermi7993.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=613bp
MSFLLRAVIVAVIALSASVSTALPKPDVPWRDLAVFKYDFRISDEFSGNR
LDLSKWDPHGKRNPDTQCPNWNGPPSSSQPQWSTFFPTTTDPDGGPAERF
YEVANGRLRLRTDSKPLEYFQKREYYCDATTFKCNHNDQIDCFSTDYNGV
PFYKDAEKTQYAGVTHDKCKIEPYCIPHPQFVTGKPRVYSRMVGAHLTSK
RSFKYGFFEAEVQLGDNPAVAAVWMHDDQMVNGYCRYVQNSDPNSDRDRL
LECPSAIRSRRWQEIDMLEAMNSAIHQQLYIPNIHAFAGYKGEFTSENAV
DKGDGNMGGGPILVKKSVFNENNPSFSDVSQAEQLANDWHFSSGSVHTLD
APWSAKRRRIGLYWSPKEIRFLIDGVEVQRMRNTIIHQPMLFDLSYSYNV
QWARETPSSEQVARPFEIMYVRRWDVYTADGLDPPSDLPLNEKMSGFGNY
YGEQLLGMFQRFPANDDKTFSEVFDEQDTIQNIRDSILSSASSSSDKLAP
VQRAAFNLHTGERDYVLGARSVNETMFTVRQGQRFKRAGGVGNARFSRAR
DKLTAAQRRIALSYKSRSAAVANGRAARLQDPETTVFEFANPQKNGAGWA
TRDGLGTDGSLA*
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mRNA from alignment at ScGOVlb_24226:540259..542097-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7993.t1 ID=Gvermi7993.t1|Name=Gvermi7993.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at ScGOVlb_24226:540259..542097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTCCTACTCCGCGCGGTGATCGTCGCTGTGATTGCGCTCTCCGC
CAGCGTGTCAACTGCCCTACCCAAGCCAGACGTTCCCTGGCGTGACTTGG
CCGTCTTCAAATATGACTTCAGGATATCTGATGAGTTCAGCGGCAATCGC
CTCGACCTCTCAAAATGGGACCCCCACGGCAAAAGAAATCCAGACACTCA
ATGTCCTAACTGGAACGGACCCCCCTCATCTTCTCAACCTCAATGGTCCA
CATTCTTCCCCACGACCACAGACCCGGACGGCGGCCCAGCAGAGCGTTTT
TACGAGGTGGCCAACGGCCGACTCAGACTTCGCACAGACAGCAAACCGCT
CGAATACTTTCAGAAACGCGAGTACTACTGTGACGCCACCACATTCAAAT
GCAACCACAACGACCAGATTGACTGCTTTTCCACAGATTACAATGGCGTC
CCGTTCTACAAAGACGCTGAAAAGACACAGTACGCCGGTGTGACGCACGA
CAAGTGCAAGATTGAGCCGTACTGCATCCCACACCCGCAGTTTGTGACTG
GCAAGCCGCGCGTGTACAGCCGCATGGTCGGCGCGCACCTCACTTCCAAG
AGGTCGTTCAAGTACGGCTTCTTCGAGGCCGAAGTGCAGCTTGGCGACAA
TCCTGCCGTTGCCGCAGTGTGGATGCATGACGATCAAATGGTCAATGGTT
ACTGTCGGTATGTGCAAAACAGCGATCCTAACAGTGACAGAGATCGTCTA
TTGGAGTGCCCGAGCGCGATCCGTTCGCGCCGTTGGCAGGAGATTGACAT
GCTGGAGGCGATGAATAGCGCCATTCACCAGCAGCTCTACATTCCAAACA
TCCATGCATTCGCCGGATACAAAGGCGAGTTCACGAGCGAGAATGCGGTG
GACAAAGGAGATGGCAACATGGGCGGCGGGCCCATTCTGGTGAAGAAGTC
GGTGTTCAATGAAAACAACCCCAGTTTCAGCGATGTGAGCCAGGCGGAGC
AATTGGCCAACGACTGGCACTTTAGTTCGGGATCGGTGCACACTTTGGAT
GCACCGTGGAGTGCCAAGCGTCGACGCATTGGTCTATACTGGTCGCCAAA
GGAAATCCGATTCCTCATCGACGGGGTGGAAGTGCAACGCATGCGCAACA
CGATCATTCATCAACCGATGTTGTTCGACTTGTCGTACTCGTACAACGTG
CAATGGGCACGAGAAACACCGAGTTCGGAACAGGTAGCGCGCCCGTTTGA
AATCATGTACGTTCGACGGTGGGACGTGTACACTGCGGATGGGCTAGATC
CACCAAGCGATCTGCCTCTCAACGAGAAGATGAGCGGCTTTGGGAACTAC
TACGGGGAGCAGCTGTTGGGCATGTTCCAGCGATTCCCAGCAAACGACGA
CAAGACTTTTTCGGAGGTGTTCGACGAACAGGATACAATCCAGAACATTC
GGGACTCTATCCTGAGCTCTGCGTCGTCCTCCAGTGACAAGCTGGCGCCG
GTGCAACGGGCGGCGTTCAATCTGCACACGGGAGAGCGGGACTATGTGCT
GGGGGCGCGAAGTGTGAACGAGACGATGTTCACGGTGCGGCAGGGGCAAC
GCTTCAAGCGCGCTGGCGGGGTGGGAAACGCGCGCTTCTCCAGGGCGCGC
GACAAGCTCACCGCGGCGCAGCGGCGCATCGCGCTCAGCTACAAGTCGCG
CTCGGCGGCGGTGGCGAACGGCAGAGCGGCACGGCTACAGGATCCGGAGA
CGACTGTGTTCGAGTTCGCAAACCCGCAGAAAAATGGCGCGGGTTGGGCT
ACTCGCGACGGTCTGGGGACGGACGGAAGCCTGGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:540259..542097-

>Gvermi7993.t1 ID=Gvermi7993.t1|Name=Gvermi7993.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1839bp|location=Sequence derived from alignment at ScGOVlb_24226:540259..542097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTCCTACTCCGCGCGGTGATCGTCGCTGTGATTGCGCTCTCCGC
CAGCGTGTCAACTGCCCTACCCAAGCCAGACGTTCCCTGGCGTGACTTGG
CCGTCTTCAAATATGACTTCAGGATATCTGATGAGTTCAGCGGCAATCGC
CTCGACCTCTCAAAATGGGACCCCCACGGCAAAAGAAATCCAGACACTCA
ATGTCCTAACTGGAACGGACCCCCCTCATCTTCTCAACCTCAATGGTCCA
CATTCTTCCCCACGACCACAGACCCGGACGGCGGCCCAGCAGAGCGTTTT
TACGAGGTGGCCAACGGCCGACTCAGACTTCGCACAGACAGCAAACCGCT
CGAATACTTTCAGAAACGCGAGTACTACTGTGACGCCACCACATTCAAAT
GCAACCACAACGACCAGATTGACTGCTTTTCCACAGATTACAATGGCGTC
CCGTTCTACAAAGACGCTGAAAAGACACAGTACGCCGGTGTGACGCACGA
CAAGTGCAAGATTGAGCCGTACTGCATCCCACACCCGCAGTTTGTGACTG
GCAAGCCGCGCGTGTACAGCCGCATGGTCGGCGCGCACCTCACTTCCAAG
AGGTCGTTCAAGTACGGCTTCTTCGAGGCCGAAGTGCAGCTTGGCGACAA
TCCTGCCGTTGCCGCAGTGTGGATGCATGACGATCAAATGGTCAATGGTT
ACTGTCGGTATGTGCAAAACAGCGATCCTAACAGTGACAGAGATCGTCTA
TTGGAGTGCCCGAGCGCGATCCGTTCGCGCCGTTGGCAGGAGATTGACAT
GCTGGAGGCGATGAATAGCGCCATTCACCAGCAGCTCTACATTCCAAACA
TCCATGCATTCGCCGGATACAAAGGCGAGTTCACGAGCGAGAATGCGGTG
GACAAAGGAGATGGCAACATGGGCGGCGGGCCCATTCTGGTGAAGAAGTC
GGTGTTCAATGAAAACAACCCCAGTTTCAGCGATGTGAGCCAGGCGGAGC
AATTGGCCAACGACTGGCACTTTAGTTCGGGATCGGTGCACACTTTGGAT
GCACCGTGGAGTGCCAAGCGTCGACGCATTGGTCTATACTGGTCGCCAAA
GGAAATCCGATTCCTCATCGACGGGGTGGAAGTGCAACGCATGCGCAACA
CGATCATTCATCAACCGATGTTGTTCGACTTGTCGTACTCGTACAACGTG
CAATGGGCACGAGAAACACCGAGTTCGGAACAGGTAGCGCGCCCGTTTGA
AATCATGTACGTTCGACGGTGGGACGTGTACACTGCGGATGGGCTAGATC
CACCAAGCGATCTGCCTCTCAACGAGAAGATGAGCGGCTTTGGGAACTAC
TACGGGGAGCAGCTGTTGGGCATGTTCCAGCGATTCCCAGCAAACGACGA
CAAGACTTTTTCGGAGGTGTTCGACGAACAGGATACAATCCAGAACATTC
GGGACTCTATCCTGAGCTCTGCGTCGTCCTCCAGTGACAAGCTGGCGCCG
GTGCAACGGGCGGCGTTCAATCTGCACACGGGAGAGCGGGACTATGTGCT
GGGGGCGCGAAGTGTGAACGAGACGATGTTCACGGTGCGGCAGGGGCAAC
GCTTCAAGCGCGCTGGCGGGGTGGGAAACGCGCGCTTCTCCAGGGCGCGC
GACAAGCTCACCGCGGCGCAGCGGCGCATCGCGCTCAGCTACAAGTCGCG
CTCGGCGGCGGTGGCGAACGGCAGAGCGGCACGGCTACAGGATCCGGAGA
CGACTGTGTTCGAGTTCGCAAACCCGCAGAAAAATGGCGCGGGTTGGGCT
ACTCGCGACGGTCTGGGGACGGACGGAAGCCTGGCGTGA
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