Gvermi7957.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7957.t1
Unique NameGvermi7957.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:306505..306996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK075CT
PFAMsTPM_phosphatase
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042578,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0071704,GO:1901564
Evalue1.04e-27
EggNOG OGsCOG1512@1|root,2QQ6F@2759|Eukaryota
DescriptionUPF0603 protein At1g54780
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7957Gvermi7957Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 306505..306996 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7957.t1.start1Gvermi7957.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 306505..306507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7957.t1.CDS1Gvermi7957.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 306505..306996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7957.t1.exon1Gvermi7957.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 306505..306996 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7957.t1.stop1Gvermi7957.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 306994..306996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7957.t1Gvermi7957.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 306505..306996 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7957.t1 ID=Gvermi7957.t1|Name=Gvermi7957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=164bp
MARTRERSGVAVRFALLRALPFGQTPDECAAELARQWALGDGDVLFVASP
RLARAGVFVGAAAARVLPPDVARSVAEQTFGVPAGDERYAAAVLDVSNRL
VAVLGGEPDPGPPAVAINESVQTYKTKAETSGSRRKYVAVVAVVLVISFV
APLLQTYWYVRDD*
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spliced messenger RNA

>Gvermi7957.t1 ID=Gvermi7957.t1|Name=Gvermi7957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:306505..306996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCACGCGCGAGCGCAGCGGCGTGGCGGTGCGCTTCGCGCTGCT
GCGCGCGCTGCCGTTCGGGCAGACGCCCGACGAGTGCGCGGCCGAGCTGG
CGCGCCAGTGGGCGCTGGGCGACGGCGACGTGCTGTTCGTGGCGTCGCcg
cggctggcgcgcgccggcgTGTTCGTGGGCGCCGCCGCCGCGCGCGTGCT
GCCGCCCGACGTGGCGCGCAGCGTGGCCGAGCAGACGTTCGGCGTGCCGG
CCGGCGACGAGCGCTACGCCGCCGCCGTGCTGGACGTGAGCAACCGGCTG
GTGGCCGTGCTGGGCGGCGAGCCCGACCCCGGCCCGCCCGCCGTCGCCAT
CAACGAGAGCGTGCAGACGTACAAGACCAAGGCCGAGACGTCCGGCTCGC
GCCGCAAGTAcgtcgccgtcgtcgccgtcgtgctcgtcatcAGCTTTGTG
GCGCCGCTGCTGCAGACGTACTGGTACGTGCGCGACGACTGA
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protein sequence of Gvermi7957.t1

>Gvermi7957.t1 ID=Gvermi7957.t1|Name=Gvermi7957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MARTRERSGVAVRFALLRALPFGQTPDECAAELARQWALGDGDVLFVASP
RLARAGVFVGAAAARVLPPDVARSVAEQTFGVPAGDERYAAAVLDVSNRL
VAVLGGEPDPGPPAVAINESVQTYKTKAETSGSRRKYVAVVAVVLVISFV
APLLQTYWYVRDD*
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mRNA from alignment at ScGOVlb_24226:306505..306996+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7957.t1 ID=Gvermi7957.t1|Name=Gvermi7957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:306505..306996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGCGCGAGCGCAGCGGCGTGGCGGTGCGCTTCGCGCTGCT
GCGCGCGCTGCCGTTCGGGCAGACGCCCGACGAGTGCGCGGCCGAGCTGG
CGCGCCAGTGGGCGCTGGGCGACGGCGACGTGCTGTTCGTGGCGTCGCcg
cggctggcgcgcgccggcgTGTTCGTGGGCGCCGCCGCCGCGCGCGTGCT
GCCGCCCGACGTGGCGCGCAGCGTGGCCGAGCAGACGTTCGGCGTGCCGG
CCGGCGACGAGCGCTACGCCGCCGCCGTGCTGGACGTGAGCAACCGGCTG
GTGGCCGTGCTGGGCGGCGAGCCCGACCCCGGCCCGCCCGCCGTCGCCAT
CAACGAGAGCGTGCAGACGTACAAGACCAAGGCCGAGACGTCCGGCTCGC
GCCGCAAGTAcgtcgccgtcgtcgccgtcgtgctcgtcatcAGCTTTGTG
GCGCCGCTGCTGCAGACGTACTGGTACGTGCGCGACGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:306505..306996+

>Gvermi7957.t1 ID=Gvermi7957.t1|Name=Gvermi7957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:306505..306996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGCGCGAGCGCAGCGGCGTGGCGGTGCGCTTCGCGCTGCT
GCGCGCGCTGCCGTTCGGGCAGACGCCCGACGAGTGCGCGGCCGAGCTGG
CGCGCCAGTGGGCGCTGGGCGACGGCGACGTGCTGTTCGTGGCGTCGCcg
cggctggcgcgcgccggcgTGTTCGTGGGCGCCGCCGCCGCGCGCGTGCT
GCCGCCCGACGTGGCGCGCAGCGTGGCCGAGCAGACGTTCGGCGTGCCGG
CCGGCGACGAGCGCTACGCCGCCGCCGTGCTGGACGTGAGCAACCGGCTG
GTGGCCGTGCTGGGCGGCGAGCCCGACCCCGGCCCGCCCGCCGTCGCCAT
CAACGAGAGCGTGCAGACGTACAAGACCAAGGCCGAGACGTCCGGCTCGC
GCCGCAAGTAcgtcgccgtcgtcgccgtcgtgctcgtcatcAGCTTTGTG
GCGCCGCTGCTGCAGACGTACTGGTACGTGCGCGACGACTGA
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