Gvermi7950.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7950.t1
Unique NameGvermi7950.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:286659..287258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705814.1
Preferred nameCHCHD4
PFAMsCHCH
Max annot lvl2759|Eukaryota
KEGG koko:K17782
KEGG TC3.A.8.1
GOsGO:0000002,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005777,GO:0006139,GO:0006259,GO:0006281,GO:0006457,GO:0006458,GO:0006464,GO:0006605,GO:0006625,GO:0006626,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007005,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0015031,GO:0015035,GO:0015036,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0017038,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019222,GO:0019538,GO:0019866,GO:0022417,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032042,GO:0032386,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034097,GO:0034599,GO:0034613,GO:0034641,GO:0036211,GO:0042221,GO:0042579,GO:0042721,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043457,GO:0043467,GO:0043504,GO:0043574,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046483,GO:0046822,GO:0046825,GO:0046907,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051084,GO:0051179,GO:0051223,GO:0051234,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055114,GO:0060341,GO:0065002,GO:0065007,GO:0070013,GO:0070201,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072662,GO:0072663,GO:0090087,GO:0090304,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901360,GO:1901564,GO:1901857,GO:1903827,GO:1990542,GO:1990823,GO:1990830
Evalue1.91e-32
EggNOG OGsKOG4149@1|root,KOG4149@2759|Eukaryota
Descriptionprotein transport
COG categoryS
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7950Gvermi7950Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 286659..287258 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7950.t1.start1Gvermi7950.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 286659..286661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7950.t1.CDS1Gvermi7950.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 286659..287258 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7950.t1.exon1Gvermi7950.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 286659..287258 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7950.t1.stop1Gvermi7950.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 287256..287258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7950.t1Gvermi7950.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 286659..287258 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7950.t1 ID=Gvermi7950.t1|Name=Gvermi7950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=200bp
MEPKAASPPETEPEPEVFAASASEKAIMAGRSDSDVPHLADLSEEPLNAT
HKEPEQHQQRVERNDHEEAPQSSAVADPDASKGEREIAPAAPHDSHPSSE
RALTKEELIEEALNCPCIASMKEGSCGDSFIEAYKCFLQSETEPKGMDCM
ENFKTMQSCLAEHPDEYNLDDDDAEDPFSISKEKHEPDAPQVKSESPSA*
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spliced messenger RNA

>Gvermi7950.t1 ID=Gvermi7950.t1|Name=Gvermi7950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=600bp|location=Sequence derived from alignment at ScGOVlb_24226:286659..287258+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCAAAGCCGCGTCGCCTCCGGAAACTGAGCCCGAGCCAGAAGT
GTTTGCGGCGTCTGCGTCAGAAAAGGCCATAATGGCGGGCAGAAGCGATT
CAGATGTGCCACATCTGGCAGATCTGTCCGAAGAACCGCTCAACGCGACG
CACAAGGAGCCGGAGCAGCATCAGCAACGCGTCGAAAGGAACGACCATGA
GGAAGCCCCGCAATCATCAGCTGTAGCAGATCCAGATGCTTCCAAGGGCG
AACGCGAAATCGCCCCCGCCGCACCGCATGACTCACATCCGAGCAGCGAA
CGCGCTTTGACCAAAGAGGAGCTCATCGAAGAGGCACTCAACTGCCCTTG
CATTGCGTCCATGAAAGAAGGATCCTGTGGAGATTCGTTTATCGAGGCGT
ACAAATGCTTTTTGCAAAGCGAGACGGAGCCCAAGGGTATGGACTGTATG
GAAAACTTCAAGACCATGCAATCTTGCCTTGCAGAACATCCGGACGAATA
TAACTTGGACGACGATGACGCTGAGGACCCGTTTTCAATCTCAAAGGAAA
AGCACGAACCTGACGCACCCCAAGTCAAGTCGGAGTCACCATCTGCGTAA
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protein sequence of Gvermi7950.t1

>Gvermi7950.t1 ID=Gvermi7950.t1|Name=Gvermi7950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=200bp
MEPKAASPPETEPEPEVFAASASEKAIMAGRSDSDVPHLADLSEEPLNAT
HKEPEQHQQRVERNDHEEAPQSSAVADPDASKGEREIAPAAPHDSHPSSE
RALTKEELIEEALNCPCIASMKEGSCGDSFIEAYKCFLQSETEPKGMDCM
ENFKTMQSCLAEHPDEYNLDDDDAEDPFSISKEKHEPDAPQVKSESPSA*
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mRNA from alignment at ScGOVlb_24226:286659..287258+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7950.t1 ID=Gvermi7950.t1|Name=Gvermi7950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=600bp|location=Sequence derived from alignment at ScGOVlb_24226:286659..287258+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCCAAAGCCGCGTCGCCTCCGGAAACTGAGCCCGAGCCAGAAGT
GTTTGCGGCGTCTGCGTCAGAAAAGGCCATAATGGCGGGCAGAAGCGATT
CAGATGTGCCACATCTGGCAGATCTGTCCGAAGAACCGCTCAACGCGACG
CACAAGGAGCCGGAGCAGCATCAGCAACGCGTCGAAAGGAACGACCATGA
GGAAGCCCCGCAATCATCAGCTGTAGCAGATCCAGATGCTTCCAAGGGCG
AACGCGAAATCGCCCCCGCCGCACCGCATGACTCACATCCGAGCAGCGAA
CGCGCTTTGACCAAAGAGGAGCTCATCGAAGAGGCACTCAACTGCCCTTG
CATTGCGTCCATGAAAGAAGGATCCTGTGGAGATTCGTTTATCGAGGCGT
ACAAATGCTTTTTGCAAAGCGAGACGGAGCCCAAGGGTATGGACTGTATG
GAAAACTTCAAGACCATGCAATCTTGCCTTGCAGAACATCCGGACGAATA
TAACTTGGACGACGATGACGCTGAGGACCCGTTTTCAATCTCAAAGGAAA
AGCACGAACCTGACGCACCCCAAGTCAAGTCGGAGTCACCATCTGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:286659..287258+

>Gvermi7950.t1 ID=Gvermi7950.t1|Name=Gvermi7950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=600bp|location=Sequence derived from alignment at ScGOVlb_24226:286659..287258+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCCAAAGCCGCGTCGCCTCCGGAAACTGAGCCCGAGCCAGAAGT
GTTTGCGGCGTCTGCGTCAGAAAAGGCCATAATGGCGGGCAGAAGCGATT
CAGATGTGCCACATCTGGCAGATCTGTCCGAAGAACCGCTCAACGCGACG
CACAAGGAGCCGGAGCAGCATCAGCAACGCGTCGAAAGGAACGACCATGA
GGAAGCCCCGCAATCATCAGCTGTAGCAGATCCAGATGCTTCCAAGGGCG
AACGCGAAATCGCCCCCGCCGCACCGCATGACTCACATCCGAGCAGCGAA
CGCGCTTTGACCAAAGAGGAGCTCATCGAAGAGGCACTCAACTGCCCTTG
CATTGCGTCCATGAAAGAAGGATCCTGTGGAGATTCGTTTATCGAGGCGT
ACAAATGCTTTTTGCAAAGCGAGACGGAGCCCAAGGGTATGGACTGTATG
GAAAACTTCAAGACCATGCAATCTTGCCTTGCAGAACATCCGGACGAATA
TAACTTGGACGACGATGACGCTGAGGACCCGTTTTCAATCTCAAAGGAAA
AGCACGAACCTGACGCACCCCAAGTCAAGTCGGAGTCACCATCTGCGTAA
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