Gvermi7937.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7937.t1
Unique NameGvermi7937.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:185998..186816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704201.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00425
KEGG koko:K05857,ko:K14684,ko:K15111
KEGG TC2.A.29.18,2.A.29.23
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
Evalue1.4e-75
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
EC3.1.4.11
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7937Gvermi7937Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 185998..186816 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7937.t1.stop1Gvermi7937.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 185998..186000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7937.t1.CDS1Gvermi7937.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 185998..186816 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7937.t1.exon1Gvermi7937.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 185998..186816 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7937.t1.start1Gvermi7937.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 186814..186816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7937.t1Gvermi7937.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 185998..186816 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7937.t1 ID=Gvermi7937.t1|Name=Gvermi7937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=273bp
MDTVKTVVQAASKSNLKVGTFGALSSTLRTGGLPALYKGIGISMGGQVPA
GAIKFAAFETLTQFFANLSASGTNGPLVDFSCGALAFIACSIVLVPAELM
KQRLQAGVYPGFVSGVQAILKREGPRALYTGYGATLLRDVPYTMLEFGLY
SQFKKLFRAAVNRPKLTPHEEIALGGVAGGCTGFLTTPLDLAKTRLMTQM
TSGSQRQYKGVADVLVKVFKTEGLSGLFKGSTARVVWLIPFTAVFFGVHE
ASKRALLDRKLRSTTAVKQKAP*
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spliced messenger RNA

>Gvermi7937.t1 ID=Gvermi7937.t1|Name=Gvermi7937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp|location=Sequence derived from alignment at ScGOVlb_24226:185998..186816- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACTGTGAAAACTGTTGTGCAAGCCGCGTCAAAATCCAACTTGAA
AGTGGGCACATTTGGGGCCCTCTCGTCAACGTTGAGAACTGGTGGCTTAC
CAGCTCTTTACAAAGGAATAGGAATCAGTATGGGAGGTCAGGTGCCCGCG
GGCGCCATCAAATTTGCGGCTTTTGAAACTTTGACTCAATTCTTTGCGAA
TCTAAGTGCGTCCGGTACAAATGGGCCGCTTGTGGACTTTTCCTGCGGAG
CCTTGGCGTTTATCGCCTGTTCTATTGTGTTAGTGCCGGCAGAGTTAATG
AAACAGCGTTTGCAGGCTGGTGTCTATCCTGGGTTCGTCTCTGGTGTACA
AGCCATTTTAAAGCGGGAGGGTCCCAGAGCACTCTATACCGGTTATGGAG
CAACCTTATTACGAGACGTCCCGTACACTATGCTTGAGTTTGGTTTGTAC
TCTCAGTTTAAGAAGCTGTTTCGCGCAGCAGTTAATCGTCCGAAATTAAC
GCCTCATGAAGAGATTGCTCTTGGAGGAGTCGCAGGCGGCTGTACTGGCT
TTCTCACCACACCTCTTGATCTTGCTAAGACTCGCCTTATGACTCAGATG
ACTTCCGGGTCGCAGAGACAGTACAAAGGTGTTGCTGATGTCCTGGTCAA
GGTGTTTAAAACTGAAGGTCTAAGCGGCTTGTTCAAAGGATCTACTGCTC
GTGTTGTGTGGCTTATTCCGTTCACCGCTGTCTTCTTTGGCGTTCATGAG
GCCTCTAAGCGTGCGCTTTTGGATCGTAAACTCCGAAGTACCACTGCTGT
GAAACAGAAAGCTCCATAA
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protein sequence of Gvermi7937.t1

>Gvermi7937.t1 ID=Gvermi7937.t1|Name=Gvermi7937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=273bp
MDTVKTVVQAASKSNLKVGTFGALSSTLRTGGLPALYKGIGISMGGQVPA
GAIKFAAFETLTQFFANLSASGTNGPLVDFSCGALAFIACSIVLVPAELM
KQRLQAGVYPGFVSGVQAILKREGPRALYTGYGATLLRDVPYTMLEFGLY
SQFKKLFRAAVNRPKLTPHEEIALGGVAGGCTGFLTTPLDLAKTRLMTQM
TSGSQRQYKGVADVLVKVFKTEGLSGLFKGSTARVVWLIPFTAVFFGVHE
ASKRALLDRKLRSTTAVKQKAP*
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mRNA from alignment at ScGOVlb_24226:185998..186816-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7937.t1 ID=Gvermi7937.t1|Name=Gvermi7937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp|location=Sequence derived from alignment at ScGOVlb_24226:185998..186816- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACTGTGAAAACTGTTGTGCAAGCCGCGTCAAAATCCAACTTGAA
AGTGGGCACATTTGGGGCCCTCTCGTCAACGTTGAGAACTGGTGGCTTAC
CAGCTCTTTACAAAGGAATAGGAATCAGTATGGGAGGTCAGGTGCCCGCG
GGCGCCATCAAATTTGCGGCTTTTGAAACTTTGACTCAATTCTTTGCGAA
TCTAAGTGCGTCCGGTACAAATGGGCCGCTTGTGGACTTTTCCTGCGGAG
CCTTGGCGTTTATCGCCTGTTCTATTGTGTTAGTGCCGGCAGAGTTAATG
AAACAGCGTTTGCAGGCTGGTGTCTATCCTGGGTTCGTCTCTGGTGTACA
AGCCATTTTAAAGCGGGAGGGTCCCAGAGCACTCTATACCGGTTATGGAG
CAACCTTATTACGAGACGTCCCGTACACTATGCTTGAGTTTGGTTTGTAC
TCTCAGTTTAAGAAGCTGTTTCGCGCAGCAGTTAATCGTCCGAAATTAAC
GCCTCATGAAGAGATTGCTCTTGGAGGAGTCGCAGGCGGCTGTACTGGCT
TTCTCACCACACCTCTTGATCTTGCTAAGACTCGCCTTATGACTCAGATG
ACTTCCGGGTCGCAGAGACAGTACAAAGGTGTTGCTGATGTCCTGGTCAA
GGTGTTTAAAACTGAAGGTCTAAGCGGCTTGTTCAAAGGATCTACTGCTC
GTGTTGTGTGGCTTATTCCGTTCACCGCTGTCTTCTTTGGCGTTCATGAG
GCCTCTAAGCGTGCGCTTTTGGATCGTAAACTCCGAAGTACCACTGCTGT
GAAACAGAAAGCTCCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:185998..186816-

>Gvermi7937.t1 ID=Gvermi7937.t1|Name=Gvermi7937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=819bp|location=Sequence derived from alignment at ScGOVlb_24226:185998..186816- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACTGTGAAAACTGTTGTGCAAGCCGCGTCAAAATCCAACTTGAA
AGTGGGCACATTTGGGGCCCTCTCGTCAACGTTGAGAACTGGTGGCTTAC
CAGCTCTTTACAAAGGAATAGGAATCAGTATGGGAGGTCAGGTGCCCGCG
GGCGCCATCAAATTTGCGGCTTTTGAAACTTTGACTCAATTCTTTGCGAA
TCTAAGTGCGTCCGGTACAAATGGGCCGCTTGTGGACTTTTCCTGCGGAG
CCTTGGCGTTTATCGCCTGTTCTATTGTGTTAGTGCCGGCAGAGTTAATG
AAACAGCGTTTGCAGGCTGGTGTCTATCCTGGGTTCGTCTCTGGTGTACA
AGCCATTTTAAAGCGGGAGGGTCCCAGAGCACTCTATACCGGTTATGGAG
CAACCTTATTACGAGACGTCCCGTACACTATGCTTGAGTTTGGTTTGTAC
TCTCAGTTTAAGAAGCTGTTTCGCGCAGCAGTTAATCGTCCGAAATTAAC
GCCTCATGAAGAGATTGCTCTTGGAGGAGTCGCAGGCGGCTGTACTGGCT
TTCTCACCACACCTCTTGATCTTGCTAAGACTCGCCTTATGACTCAGATG
ACTTCCGGGTCGCAGAGACAGTACAAAGGTGTTGCTGATGTCCTGGTCAA
GGTGTTTAAAACTGAAGGTCTAAGCGGCTTGTTCAAAGGATCTACTGCTC
GTGTTGTGTGGCTTATTCCGTTCACCGCTGTCTTCTTTGGCGTTCATGAG
GCCTCTAAGCGTGCGCTTTTGGATCGTAAACTCCGAAGTACCACTGCTGT
GAAACAGAAAGCTCCATAA
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