Gvermi7927.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7927.t1
Unique NameGvermi7927.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:88297..89721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706511.1
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
GOsGO:0003674,GO:0003824,GO:0004372,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue7.83e-251
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7927Gvermi7927Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 88297..89721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7927.t1.stop1Gvermi7927.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 88297..88299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7927.t1.CDS1Gvermi7927.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 88297..89721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7927.t1.exon1Gvermi7927.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 88297..89721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7927.t1.start1Gvermi7927.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 89719..89721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7927.t1Gvermi7927.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 88297..89721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7927.t1 ID=Gvermi7927.t1|Name=Gvermi7927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp
MAECYVNGHYNDSFASFPGNRPVEQVDPELYDLLRREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGFIDYDKLEESALVFRPKLLICGAS
AYPRDWDFERLRQIADKSGALLMCDMAHISGLVATGQASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAEGNDTGKVYQWENKVNMAVFPGCQGG
PHNNTIGALAVALKEAMTPEFKEYCKQTCANARVLGEELVKMGYSLVTGG
TENHLVLWDLRPQGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVEKDFVQIAAFLDRAVTLALSIQKEVGTKMKDFGPAAEKD
ARVKALREEVIEYSKAFPMPGGVL*
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spliced messenger RNA

>Gvermi7927.t1 ID=Gvermi7927.t1|Name=Gvermi7927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:88297..89721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGTGTTATGTTAACGGCCATTATAACGACAGTTTTGCAAGCTT
CCCGGGCAATCGCCCCGTTGAGCAAGTGGATCCGGAACTCTACGACCTTC
TTCGTCGCGAGAAGCAGCGTCAGTATGAAGGAATTGAGCTCATCGCAAGC
GAGAACTTCACATCTCGTGCCGTGATGGAAGTGTTGGGATCGTCTTTGAC
CAACAAGTACTCTGAGGGCTTGCCGGGTGCTCGCTACTATGGAGGAAACG
AAGTCATCGATGACATTGAACGACTTGTGCAGAAACGTGCTCTCGAATGC
TTTGGATTGGACGCTTCTGCCTGGGGTGTCAATGTGCAGCCGTACTCGGG
ATCCACGGCCAACTTTGCTCTCTACACAGCCGTGCTGAACCCGCATGATC
GCATCATGGGCCTCGATCTTCCATCCGGCGGCCATCTTACTCATGGTTTC
TACACGGCGAAGAGGAAGATTTCGGCCACAAGCGTATACTTTGAGTCGCT
ACCGTATAAGGTGGACGAGAAAACCGGGTTCATTGACTACGACAAGTTGG
AGGAAAGCGCTCTCGTCTTCCGTCCCAAGTTGCTCATTTGTGGTGCAAGC
GCGTATCCGCGCGACTGGGATTTTGAACGTCTGCGCCAGATTGCAGACAA
GAGTGGGGCTCTTCTTATGTGCGATATGGCTCATATCTCTGGTCTTGTGG
CCACAGGTCAGGCATCGAGCCCGTTCAAACTCTGTGATTTTGTGACGTCC
ACGACACACAAGAGCTTGCGCGGTCCCCGCCAGGGGTTGATATTCTACCG
ACGTGGTCCGATTCTGGACGCGGAAGGAAACGATACCGGCAAAGTGTATC
AGTGGGAGAACAAAGTGAACATGGCTGTGTTCCCCGGGTGCCAGGGCGGG
CCGCACAACAACACAATCGGTGCGCTTGCCGTAGCGCTTAAGGAGGCTAT
GACTCCCGAATTCAAGGAGTACTGCAAGCAGACGTGCGCTAACGCGCGGG
TGCTTGGCGAAGAATTGGTGAAGATGGGATACTCGCTGGTGACAGGCGGC
ACCGAGAACCACCTGGTTTTGTGGGACTTGCGTCCGCAAGGCGTCGGCGG
ATCCAAGGTGGAGAAGGTGTGTGACTTAGCCCACATCACTCTGAACAAGA
ACGCAGTGGCTGGCGACACGTCGGCGCTGAACCCGGGCGGAGTGCGTATC
GGGGCTCCGGCGATGACTTCGCGCGGACTGGTTGAAAAGGACTTTGTGCA
GATTGCGGCATTCCTAGATCGGGCCGTGACGCTGGCGTTGAGCATTCAGA
AGGAAGTTGGGACGAAGATGAAGGACTTTGGGCCGGCGGCCGAAAAGGAT
GCGAGGGTGAAGGCGCTTCGTGAGGAAGTGATTGAGTATTCCAAGGCATT
CCCGATGCCAGGCGGTGTGCTATAA
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protein sequence of Gvermi7927.t1

>Gvermi7927.t1 ID=Gvermi7927.t1|Name=Gvermi7927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=475bp
MAECYVNGHYNDSFASFPGNRPVEQVDPELYDLLRREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGFIDYDKLEESALVFRPKLLICGAS
AYPRDWDFERLRQIADKSGALLMCDMAHISGLVATGQASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAEGNDTGKVYQWENKVNMAVFPGCQGG
PHNNTIGALAVALKEAMTPEFKEYCKQTCANARVLGEELVKMGYSLVTGG
TENHLVLWDLRPQGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVEKDFVQIAAFLDRAVTLALSIQKEVGTKMKDFGPAAEKD
ARVKALREEVIEYSKAFPMPGGVL*
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mRNA from alignment at ScGOVlb_24226:88297..89721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7927.t1 ID=Gvermi7927.t1|Name=Gvermi7927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:88297..89721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAGTGTTATGTTAACGGCCATTATAACGACAGTTTTGCAAGCTT
CCCGGGCAATCGCCCCGTTGAGCAAGTGGATCCGGAACTCTACGACCTTC
TTCGTCGCGAGAAGCAGCGTCAGTATGAAGGAATTGAGCTCATCGCAAGC
GAGAACTTCACATCTCGTGCCGTGATGGAAGTGTTGGGATCGTCTTTGAC
CAACAAGTACTCTGAGGGCTTGCCGGGTGCTCGCTACTATGGAGGAAACG
AAGTCATCGATGACATTGAACGACTTGTGCAGAAACGTGCTCTCGAATGC
TTTGGATTGGACGCTTCTGCCTGGGGTGTCAATGTGCAGCCGTACTCGGG
ATCCACGGCCAACTTTGCTCTCTACACAGCCGTGCTGAACCCGCATGATC
GCATCATGGGCCTCGATCTTCCATCCGGCGGCCATCTTACTCATGGTTTC
TACACGGCGAAGAGGAAGATTTCGGCCACAAGCGTATACTTTGAGTCGCT
ACCGTATAAGGTGGACGAGAAAACCGGGTTCATTGACTACGACAAGTTGG
AGGAAAGCGCTCTCGTCTTCCGTCCCAAGTTGCTCATTTGTGGTGCAAGC
GCGTATCCGCGCGACTGGGATTTTGAACGTCTGCGCCAGATTGCAGACAA
GAGTGGGGCTCTTCTTATGTGCGATATGGCTCATATCTCTGGTCTTGTGG
CCACAGGTCAGGCATCGAGCCCGTTCAAACTCTGTGATTTTGTGACGTCC
ACGACACACAAGAGCTTGCGCGGTCCCCGCCAGGGGTTGATATTCTACCG
ACGTGGTCCGATTCTGGACGCGGAAGGAAACGATACCGGCAAAGTGTATC
AGTGGGAGAACAAAGTGAACATGGCTGTGTTCCCCGGGTGCCAGGGCGGG
CCGCACAACAACACAATCGGTGCGCTTGCCGTAGCGCTTAAGGAGGCTAT
GACTCCCGAATTCAAGGAGTACTGCAAGCAGACGTGCGCTAACGCGCGGG
TGCTTGGCGAAGAATTGGTGAAGATGGGATACTCGCTGGTGACAGGCGGC
ACCGAGAACCACCTGGTTTTGTGGGACTTGCGTCCGCAAGGCGTCGGCGG
ATCCAAGGTGGAGAAGGTGTGTGACTTAGCCCACATCACTCTGAACAAGA
ACGCAGTGGCTGGCGACACGTCGGCGCTGAACCCGGGCGGAGTGCGTATC
GGGGCTCCGGCGATGACTTCGCGCGGACTGGTTGAAAAGGACTTTGTGCA
GATTGCGGCATTCCTAGATCGGGCCGTGACGCTGGCGTTGAGCATTCAGA
AGGAAGTTGGGACGAAGATGAAGGACTTTGGGCCGGCGGCCGAAAAGGAT
GCGAGGGTGAAGGCGCTTCGTGAGGAAGTGATTGAGTATTCCAAGGCATT
CCCGATGCCAGGCGGTGTGCTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:88297..89721-

>Gvermi7927.t1 ID=Gvermi7927.t1|Name=Gvermi7927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:88297..89721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAGTGTTATGTTAACGGCCATTATAACGACAGTTTTGCAAGCTT
CCCGGGCAATCGCCCCGTTGAGCAAGTGGATCCGGAACTCTACGACCTTC
TTCGTCGCGAGAAGCAGCGTCAGTATGAAGGAATTGAGCTCATCGCAAGC
GAGAACTTCACATCTCGTGCCGTGATGGAAGTGTTGGGATCGTCTTTGAC
CAACAAGTACTCTGAGGGCTTGCCGGGTGCTCGCTACTATGGAGGAAACG
AAGTCATCGATGACATTGAACGACTTGTGCAGAAACGTGCTCTCGAATGC
TTTGGATTGGACGCTTCTGCCTGGGGTGTCAATGTGCAGCCGTACTCGGG
ATCCACGGCCAACTTTGCTCTCTACACAGCCGTGCTGAACCCGCATGATC
GCATCATGGGCCTCGATCTTCCATCCGGCGGCCATCTTACTCATGGTTTC
TACACGGCGAAGAGGAAGATTTCGGCCACAAGCGTATACTTTGAGTCGCT
ACCGTATAAGGTGGACGAGAAAACCGGGTTCATTGACTACGACAAGTTGG
AGGAAAGCGCTCTCGTCTTCCGTCCCAAGTTGCTCATTTGTGGTGCAAGC
GCGTATCCGCGCGACTGGGATTTTGAACGTCTGCGCCAGATTGCAGACAA
GAGTGGGGCTCTTCTTATGTGCGATATGGCTCATATCTCTGGTCTTGTGG
CCACAGGTCAGGCATCGAGCCCGTTCAAACTCTGTGATTTTGTGACGTCC
ACGACACACAAGAGCTTGCGCGGTCCCCGCCAGGGGTTGATATTCTACCG
ACGTGGTCCGATTCTGGACGCGGAAGGAAACGATACCGGCAAAGTGTATC
AGTGGGAGAACAAAGTGAACATGGCTGTGTTCCCCGGGTGCCAGGGCGGG
CCGCACAACAACACAATCGGTGCGCTTGCCGTAGCGCTTAAGGAGGCTAT
GACTCCCGAATTCAAGGAGTACTGCAAGCAGACGTGCGCTAACGCGCGGG
TGCTTGGCGAAGAATTGGTGAAGATGGGATACTCGCTGGTGACAGGCGGC
ACCGAGAACCACCTGGTTTTGTGGGACTTGCGTCCGCAAGGCGTCGGCGG
ATCCAAGGTGGAGAAGGTGTGTGACTTAGCCCACATCACTCTGAACAAGA
ACGCAGTGGCTGGCGACACGTCGGCGCTGAACCCGGGCGGAGTGCGTATC
GGGGCTCCGGCGATGACTTCGCGCGGACTGGTTGAAAAGGACTTTGTGCA
GATTGCGGCATTCCTAGATCGGGCCGTGACGCTGGCGTTGAGCATTCAGA
AGGAAGTTGGGACGAAGATGAAGGACTTTGGGCCGGCGGCCGAAAAGGAT
GCGAGGGTGAAGGCGCTTCGTGAGGAAGTGATTGAGTATTCCAAGGCATT
CCCGATGCCAGGCGGTGTGCTATAA
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