Gvermi773.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi773.t1
Unique NameGvermi773.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:61395..62567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009033988.1
PFAMsLysM,Pectate_lyase_3,WSC
Max annot lvl2759|Eukaryota
Evalue1.78e-16
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi773Gvermi773Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 61395..62567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi773.t1.stop1Gvermi773.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 61395..61397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi773.t1.CDS1Gvermi773.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 61395..62567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi773.t1.exon1Gvermi773.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 61395..62567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi773.t1.start1Gvermi773.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 62565..62567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi773.t1Gvermi773.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 61395..62567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi773.t1 ID=Gvermi773.t1|Name=Gvermi773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=391bp
MRSSSNLMINPGAENGEKEFGRNEVFRRKSMDSSGDLRVFALPTVAPPSK
GKGRNCASGTVCGNGVIKYACRHSVLSYVSFAIVLHVVLRRCTSERERRK
FLTARQHENGRERYTNSLIPSSVPIEPNITLITTGFSGYSSARQKELHLV
AFRNVNLGLERYHRLCEPQCMPVYSTSTKCSFRNVEQKVTYRDLFQEANK
FIGSTVVIANADIYLDHSIYCASMVDKNTVLALSRHPSPDCITSGRGASG
REPVDFCGGYHPRHAASHDGFVLTPPVPQPVLDGLAGLAVNELGAENVVI
HLMQTAGFNVVNPCERIHLFHQHCGNERAASARKGIASAKWRKLFGATTE
WGYGGKSWIREELRRRFGTVDCVALGVMVERKKRLPQRAF*
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spliced messenger RNA

>Gvermi773.t1 ID=Gvermi773.t1|Name=Gvermi773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_2952:61395..62567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCTCGTCCAACTTGATGATCAATCCCGGGGCGGAAAACGGTGA
AAAAGAGTTTGGCAGAAACGAAGTATTTCGACGGAAGTCTATGGACAGCA
GCGGAGATCTGAGGGTTTTCGCATTGCCAACAGTGGCACCACCGAGCAAG
GGCAAGGGCAGGAACTGCGCAAGTGGCACAGTGTGTGGCAATGGAGTGAT
AAAATATGCATGCCGCCATTCCGTGTTGTCATATGTTTCGTTTGCAATTG
TGCTTCACGTGGTTCTCAGGCGGTGTACATCCGAACGGGAAAGGCGCAAG
TTCCTCACGGCTCGCCAGCATGAAAACGGACGGGAGCGGTACACCAACTC
GTTGATTCCGTCGAGCGTGCCCATTGAACCGAACATTACTTTGATCACAA
CGGGGTTCAGCGGATATTCATCTGCTCGTCAGAAAGAATTGCACTTGGTG
GCGTTTCGCAACGTCAATCTCGGACTCGAGCGATACCATCGCCTGTGTGA
ACCGCAATGTATGCCGGTGTACTCGACGAGCACCAAGTGTTCCTTCCGCA
ACGTCGAGCAGAAGGTGACGTATCGCGATCTTTTCCAAGAGGCAAACAAG
TTCATTGGGTCTACAGTGGTGATCGCCAACGCGGACATTTACTTGGACCA
CTCGATTTACTGCGCGAGTATGGTGGACAAAAACACGGTGCTCGCTCTTT
CGCGACACCCGTCTCCCGATTGCATCACGTCTGGGCGCGGCGCCTCGGGG
CGCGAGCCCGTGGATTTCTGCGGGGGGTACCACCCGAGGCACGCGGCCAG
CCATGACGGGTTTGTGTTGACGCCGCCCGTGCCGCAGCCCGTATTAGACG
GACTGGCGGGGCTGGCCGTGAACGAACTCGGGGCGGAAAACGTGGTGATC
CACCTGATGCAAACGGCCGGCTTCAACGTGGTGAACCCGTGTGAAAGAAT
TCACCTGTTTCACCAGCACTGCGGCAACGAGAGGGCGGCGAGCGCGCGGA
AAGGGATCGCAAGCGCCAAGTGGCGCAAGTTGTTCGGCGCGACCACGGAG
TGGGGGTACGGCGGAAAGTCGTGGATTCGCGAAGAGCTGAGGCGGAGGTT
TGGGACGGTGGATTGCGTGGCGCTGGGGGTGATGGTTGAAAGAAAGAAAC
GTTTACCTCAGAGAGCGTTTTGA
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protein sequence of Gvermi773.t1

>Gvermi773.t1 ID=Gvermi773.t1|Name=Gvermi773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=391bp
MRSSSNLMINPGAENGEKEFGRNEVFRRKSMDSSGDLRVFALPTVAPPSK
GKGRNCASGTVCGNGVIKYACRHSVLSYVSFAIVLHVVLRRCTSERERRK
FLTARQHENGRERYTNSLIPSSVPIEPNITLITTGFSGYSSARQKELHLV
AFRNVNLGLERYHRLCEPQCMPVYSTSTKCSFRNVEQKVTYRDLFQEANK
FIGSTVVIANADIYLDHSIYCASMVDKNTVLALSRHPSPDCITSGRGASG
REPVDFCGGYHPRHAASHDGFVLTPPVPQPVLDGLAGLAVNELGAENVVI
HLMQTAGFNVVNPCERIHLFHQHCGNERAASARKGIASAKWRKLFGATTE
WGYGGKSWIREELRRRFGTVDCVALGVMVERKKRLPQRAF*
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mRNA from alignment at ScGOVlb_2952:61395..62567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi773.t1 ID=Gvermi773.t1|Name=Gvermi773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_2952:61395..62567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCTCGTCCAACTTGATGATCAATCCCGGGGCGGAAAACGGTGA
AAAAGAGTTTGGCAGAAACGAAGTATTTCGACGGAAGTCTATGGACAGCA
GCGGAGATCTGAGGGTTTTCGCATTGCCAACAGTGGCACCACCGAGCAAG
GGCAAGGGCAGGAACTGCGCAAGTGGCACAGTGTGTGGCAATGGAGTGAT
AAAATATGCATGCCGCCATTCCGTGTTGTCATATGTTTCGTTTGCAATTG
TGCTTCACGTGGTTCTCAGGCGGTGTACATCCGAACGGGAAAGGCGCAAG
TTCCTCACGGCTCGCCAGCATGAAAACGGACGGGAGCGGTACACCAACTC
GTTGATTCCGTCGAGCGTGCCCATTGAACCGAACATTACTTTGATCACAA
CGGGGTTCAGCGGATATTCATCTGCTCGTCAGAAAGAATTGCACTTGGTG
GCGTTTCGCAACGTCAATCTCGGACTCGAGCGATACCATCGCCTGTGTGA
ACCGCAATGTATGCCGGTGTACTCGACGAGCACCAAGTGTTCCTTCCGCA
ACGTCGAGCAGAAGGTGACGTATCGCGATCTTTTCCAAGAGGCAAACAAG
TTCATTGGGTCTACAGTGGTGATCGCCAACGCGGACATTTACTTGGACCA
CTCGATTTACTGCGCGAGTATGGTGGACAAAAACACGGTGCTCGCTCTTT
CGCGACACCCGTCTCCCGATTGCATCACGTCTGGGCGCGGCGCCTCGGGG
CGCGAGCCCGTGGATTTCTGCGGGGGGTACCACCCGAGGCACGCGGCCAG
CCATGACGGGTTTGTGTTGACGCCGCCCGTGCCGCAGCCCGTATTAGACG
GACTGGCGGGGCTGGCCGTGAACGAACTCGGGGCGGAAAACGTGGTGATC
CACCTGATGCAAACGGCCGGCTTCAACGTGGTGAACCCGTGTGAAAGAAT
TCACCTGTTTCACCAGCACTGCGGCAACGAGAGGGCGGCGAGCGCGCGGA
AAGGGATCGCAAGCGCCAAGTGGCGCAAGTTGTTCGGCGCGACCACGGAG
TGGGGGTACGGCGGAAAGTCGTGGATTCGCGAAGAGCTGAGGCGGAGGTT
TGGGACGGTGGATTGCGTGGCGCTGGGGGTGATGGTTGAAAGAAAGAAAC
GTTTACCTCAGAGAGCGTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:61395..62567-

>Gvermi773.t1 ID=Gvermi773.t1|Name=Gvermi773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1173bp|location=Sequence derived from alignment at ScGOVlb_2952:61395..62567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCTCGTCCAACTTGATGATCAATCCCGGGGCGGAAAACGGTGA
AAAAGAGTTTGGCAGAAACGAAGTATTTCGACGGAAGTCTATGGACAGCA
GCGGAGATCTGAGGGTTTTCGCATTGCCAACAGTGGCACCACCGAGCAAG
GGCAAGGGCAGGAACTGCGCAAGTGGCACAGTGTGTGGCAATGGAGTGAT
AAAATATGCATGCCGCCATTCCGTGTTGTCATATGTTTCGTTTGCAATTG
TGCTTCACGTGGTTCTCAGGCGGTGTACATCCGAACGGGAAAGGCGCAAG
TTCCTCACGGCTCGCCAGCATGAAAACGGACGGGAGCGGTACACCAACTC
GTTGATTCCGTCGAGCGTGCCCATTGAACCGAACATTACTTTGATCACAA
CGGGGTTCAGCGGATATTCATCTGCTCGTCAGAAAGAATTGCACTTGGTG
GCGTTTCGCAACGTCAATCTCGGACTCGAGCGATACCATCGCCTGTGTGA
ACCGCAATGTATGCCGGTGTACTCGACGAGCACCAAGTGTTCCTTCCGCA
ACGTCGAGCAGAAGGTGACGTATCGCGATCTTTTCCAAGAGGCAAACAAG
TTCATTGGGTCTACAGTGGTGATCGCCAACGCGGACATTTACTTGGACCA
CTCGATTTACTGCGCGAGTATGGTGGACAAAAACACGGTGCTCGCTCTTT
CGCGACACCCGTCTCCCGATTGCATCACGTCTGGGCGCGGCGCCTCGGGG
CGCGAGCCCGTGGATTTCTGCGGGGGGTACCACCCGAGGCACGCGGCCAG
CCATGACGGGTTTGTGTTGACGCCGCCCGTGCCGCAGCCCGTATTAGACG
GACTGGCGGGGCTGGCCGTGAACGAACTCGGGGCGGAAAACGTGGTGATC
CACCTGATGCAAACGGCCGGCTTCAACGTGGTGAACCCGTGTGAAAGAAT
TCACCTGTTTCACCAGCACTGCGGCAACGAGAGGGCGGCGAGCGCGCGGA
AAGGGATCGCAAGCGCCAAGTGGCGCAAGTTGTTCGGCGCGACCACGGAG
TGGGGGTACGGCGGAAAGTCGTGGATTCGCGAAGAGCTGAGGCGGAGGTT
TGGGACGGTGGATTGCGTGGCGCTGGGGGTGATGGTTGAAAGAAAGAAAC
GTTTACCTCAGAGAGCGTTTTGA
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