Gvermi769.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi769.t1
Unique NameGvermi769.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:26269..27555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008783512.1
PFAMsPPR
Max annot lvl2759|Eukaryota
Evalue7.58e-08
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi769Gvermi769Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 26269..27555 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi769.t1.stop1Gvermi769.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 26269..26271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi769.t1.CDS1Gvermi769.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 26269..27555 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi769.t1.exon1Gvermi769.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 26269..27555 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi769.t1.start1Gvermi769.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 27553..27555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi769.t1Gvermi769.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 26269..27555 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi769.t1 ID=Gvermi769.t1|Name=Gvermi769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp
MPPPSISAFLATPPAPSSPTIMPPLRTPHPPEPLPQPLTLRTVNFRLKTL
VRNKSNFDRCMWLHDQLRKRDIKPDKYTYSLLLTACATVRNSQHAMRLYH
ELRHNHVPLDDHLRANLLTVVARSPRPDIGFAMWVFASSPKPSVMLCNIL
IDLFARMHNASGAESVHRYMNAAGIQADAYTVSALIRAHVATTGPTAALS
SLRKMWRAGLSVHAAAFGQVIAAFGQMGMIDEAIALFDEMTVFGVQPQQT
TFNILIDACKGRGLQKAFEIYSEMKATTSFKGDRYTYHALINCCLAAREA
ERVPLLYDAIKRAGFKPNQVSYRLAFVAAGMMMDVDFLERVVEDMKSNSC
EPRMDTVATLVAAAIRCSDLQAALCHFSKFINRDDAPKNARFFDEIRNAL
RRFDEKGPSDSRHTQLVVDELQRSCTRE*
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spliced messenger RNA

>Gvermi769.t1 ID=Gvermi769.t1|Name=Gvermi769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_2952:26269..27555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCACCCTCTATCTCGGCCTTTTTGGCCACTCCACCTGCCCCATC
ATCACCAACTATCATGCCCCCGCTCCGAACACCGCACCCACCAGAGCCTT
TGCCTCAGCCTTTGACTCTTCGCACGGTTAACTTTCGACTGAAAACGCTT
GTTCGAAACAAAAGTAACTTCGATCGCTGTATGTGGCTACACGACCAACT
TAGGAAACGTGATATCAAGCCTGATAAGTACACATATAGTTTGTTGTTGA
CGGCGTGTGCTACTGTCAGAAACTCGCAACATGCCATGCGATTGTACCAT
GAGCTTCGCCATAACCATGTTCCTTTGGATGACCATTTACGAGCCAACCT
GCTCACTGTTGTGGCACGCTCGCCGAGACCGGACATAGGGTTCGCGATGT
GGGTGTTCGCATCCTCGCCAAAGCCCTCTGTGATGTTATGTAATATTTTA
ATCGACCTTTTCGCCCGTATGCACAACGCATCAGGTGCTGAATCTGTGCA
TCGCTATATGAATGCCGCCGGAATTCAGGCGGATGCCTACACAGTTTCCG
CTCTTATTCGGGCGCATGTGGCTACGACAGGGCCTACAGCAGCCCTCTCG
TCGCTTCGGAAAATGTGGCGCGCCGGCCTCAGCGTTCATGCGGCTGCCTT
TGGACAGGTGATAGCAGCCTTTGGACAAATGGGCATGATTGATGAGGCAA
TTGCTCTCTTTGACGAAATGACAGTCTTTGGAGTTCAGCCGCAACAGACA
ACGTTCAATATCTTGATAGACGCTTGTAAAGGTCGTGGATTACAAAAGGC
GTTCGAGATATACAGTGAAATGAAGGCCACCACTTCGTTTAAAGGCGATC
GATATACTTACCATGCTTTGATCAACTGCTGTCTAGCGGCGCGCGAGGCG
GAACGTGTACCGTTGCTATACGATGCCATCAAACGAGCTGGATTTAAGCC
GAATCAAGTAAGTTATCGGCTTGCCTTCGTTGCAGCTGGGATGATGATGG
ATGTTGACTTCCTGGAGCGTGTGGTTGAGGACATGAAGAGCAATTCGTGC
GAACCACGGATGGATACCGTGGCCACACTGGTAGCCGCCGCCATTCGATG
TTCCGATTTGCAAGCAGCACTGTGTCACTTTTCAAAATTTATCAATCGTG
ATGACGCACCTAAGAACGCTCGTTTTTTCGATGAGATTCGTAATGCGCTT
CGTCGATTTGACGAGAAGGGGCCTTCAGATTCGAGACACACGCAATTAGT
GGTTGATGAGCTACAGCGCAGTTGTACAAGGGAATAA
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protein sequence of Gvermi769.t1

>Gvermi769.t1 ID=Gvermi769.t1|Name=Gvermi769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=429bp
MPPPSISAFLATPPAPSSPTIMPPLRTPHPPEPLPQPLTLRTVNFRLKTL
VRNKSNFDRCMWLHDQLRKRDIKPDKYTYSLLLTACATVRNSQHAMRLYH
ELRHNHVPLDDHLRANLLTVVARSPRPDIGFAMWVFASSPKPSVMLCNIL
IDLFARMHNASGAESVHRYMNAAGIQADAYTVSALIRAHVATTGPTAALS
SLRKMWRAGLSVHAAAFGQVIAAFGQMGMIDEAIALFDEMTVFGVQPQQT
TFNILIDACKGRGLQKAFEIYSEMKATTSFKGDRYTYHALINCCLAAREA
ERVPLLYDAIKRAGFKPNQVSYRLAFVAAGMMMDVDFLERVVEDMKSNSC
EPRMDTVATLVAAAIRCSDLQAALCHFSKFINRDDAPKNARFFDEIRNAL
RRFDEKGPSDSRHTQLVVDELQRSCTRE*
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mRNA from alignment at ScGOVlb_2952:26269..27555-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi769.t1 ID=Gvermi769.t1|Name=Gvermi769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_2952:26269..27555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCCACCCTCTATCTCGGCCTTTTTGGCCACTCCACCTGCCCCATC
ATCACCAACTATCATGCCCCCGCTCCGAACACCGCACCCACCAGAGCCTT
TGCCTCAGCCTTTGACTCTTCGCACGGTTAACTTTCGACTGAAAACGCTT
GTTCGAAACAAAAGTAACTTCGATCGCTGTATGTGGCTACACGACCAACT
TAGGAAACGTGATATCAAGCCTGATAAGTACACATATAGTTTGTTGTTGA
CGGCGTGTGCTACTGTCAGAAACTCGCAACATGCCATGCGATTGTACCAT
GAGCTTCGCCATAACCATGTTCCTTTGGATGACCATTTACGAGCCAACCT
GCTCACTGTTGTGGCACGCTCGCCGAGACCGGACATAGGGTTCGCGATGT
GGGTGTTCGCATCCTCGCCAAAGCCCTCTGTGATGTTATGTAATATTTTA
ATCGACCTTTTCGCCCGTATGCACAACGCATCAGGTGCTGAATCTGTGCA
TCGCTATATGAATGCCGCCGGAATTCAGGCGGATGCCTACACAGTTTCCG
CTCTTATTCGGGCGCATGTGGCTACGACAGGGCCTACAGCAGCCCTCTCG
TCGCTTCGGAAAATGTGGCGCGCCGGCCTCAGCGTTCATGCGGCTGCCTT
TGGACAGGTGATAGCAGCCTTTGGACAAATGGGCATGATTGATGAGGCAA
TTGCTCTCTTTGACGAAATGACAGTCTTTGGAGTTCAGCCGCAACAGACA
ACGTTCAATATCTTGATAGACGCTTGTAAAGGTCGTGGATTACAAAAGGC
GTTCGAGATATACAGTGAAATGAAGGCCACCACTTCGTTTAAAGGCGATC
GATATACTTACCATGCTTTGATCAACTGCTGTCTAGCGGCGCGCGAGGCG
GAACGTGTACCGTTGCTATACGATGCCATCAAACGAGCTGGATTTAAGCC
GAATCAAGTAAGTTATCGGCTTGCCTTCGTTGCAGCTGGGATGATGATGG
ATGTTGACTTCCTGGAGCGTGTGGTTGAGGACATGAAGAGCAATTCGTGC
GAACCACGGATGGATACCGTGGCCACACTGGTAGCCGCCGCCATTCGATG
TTCCGATTTGCAAGCAGCACTGTGTCACTTTTCAAAATTTATCAATCGTG
ATGACGCACCTAAGAACGCTCGTTTTTTCGATGAGATTCGTAATGCGCTT
CGTCGATTTGACGAGAAGGGGCCTTCAGATTCGAGACACACGCAATTAGT
GGTTGATGAGCTACAGCGCAGTTGTACAAGGGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:26269..27555-

>Gvermi769.t1 ID=Gvermi769.t1|Name=Gvermi769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1287bp|location=Sequence derived from alignment at ScGOVlb_2952:26269..27555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCCACCCTCTATCTCGGCCTTTTTGGCCACTCCACCTGCCCCATC
ATCACCAACTATCATGCCCCCGCTCCGAACACCGCACCCACCAGAGCCTT
TGCCTCAGCCTTTGACTCTTCGCACGGTTAACTTTCGACTGAAAACGCTT
GTTCGAAACAAAAGTAACTTCGATCGCTGTATGTGGCTACACGACCAACT
TAGGAAACGTGATATCAAGCCTGATAAGTACACATATAGTTTGTTGTTGA
CGGCGTGTGCTACTGTCAGAAACTCGCAACATGCCATGCGATTGTACCAT
GAGCTTCGCCATAACCATGTTCCTTTGGATGACCATTTACGAGCCAACCT
GCTCACTGTTGTGGCACGCTCGCCGAGACCGGACATAGGGTTCGCGATGT
GGGTGTTCGCATCCTCGCCAAAGCCCTCTGTGATGTTATGTAATATTTTA
ATCGACCTTTTCGCCCGTATGCACAACGCATCAGGTGCTGAATCTGTGCA
TCGCTATATGAATGCCGCCGGAATTCAGGCGGATGCCTACACAGTTTCCG
CTCTTATTCGGGCGCATGTGGCTACGACAGGGCCTACAGCAGCCCTCTCG
TCGCTTCGGAAAATGTGGCGCGCCGGCCTCAGCGTTCATGCGGCTGCCTT
TGGACAGGTGATAGCAGCCTTTGGACAAATGGGCATGATTGATGAGGCAA
TTGCTCTCTTTGACGAAATGACAGTCTTTGGAGTTCAGCCGCAACAGACA
ACGTTCAATATCTTGATAGACGCTTGTAAAGGTCGTGGATTACAAAAGGC
GTTCGAGATATACAGTGAAATGAAGGCCACCACTTCGTTTAAAGGCGATC
GATATACTTACCATGCTTTGATCAACTGCTGTCTAGCGGCGCGCGAGGCG
GAACGTGTACCGTTGCTATACGATGCCATCAAACGAGCTGGATTTAAGCC
GAATCAAGTAAGTTATCGGCTTGCCTTCGTTGCAGCTGGGATGATGATGG
ATGTTGACTTCCTGGAGCGTGTGGTTGAGGACATGAAGAGCAATTCGTGC
GAACCACGGATGGATACCGTGGCCACACTGGTAGCCGCCGCCATTCGATG
TTCCGATTTGCAAGCAGCACTGTGTCACTTTTCAAAATTTATCAATCGTG
ATGACGCACCTAAGAACGCTCGTTTTTTCGATGAGATTCGTAATGCGCTT
CGTCGATTTGACGAGAAGGGGCCTTCAGATTCGAGACACACGCAATTAGT
GGTTGATGAGCTACAGCGCAGTTGTACAAGGGAATAA
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