Gvermi7687.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7687.t1
Unique NameGvermi7687.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2415252..2415725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7687Gvermi7687Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2415252..2415725 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7687.t1.start1Gvermi7687.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2415252..2415254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7687.t1.CDS1Gvermi7687.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2415252..2415725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7687.t1.exon1Gvermi7687.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2415252..2415725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7687.t1.stop1Gvermi7687.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2415723..2415725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7687.t1Gvermi7687.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2415252..2415725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7687.t1 ID=Gvermi7687.t1|Name=Gvermi7687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=158bp
MSNLSKTPENKSAKTSPELKSVIDFDEIDNYLSSNLQEDISAILENDETG
EYHPSIMTQVDDDGAFTLPLSFYEEIEKYLSSNPEEDVSTILREDQSNEF
NPLTFFEFYKDEKEAKETDPSMEHLLCHKTFGEMTELKMHTSPCACDSRN
CTCLGHL*
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spliced messenger RNA

>Gvermi7687.t1 ID=Gvermi7687.t1|Name=Gvermi7687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_64:2415252..2415725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATCTCAGCAAAACACCCGAAAACAAATCAGCAAAGACTTCGCC
TGAGTTGAAATCAGTTATTGATTTTGACGAGATAGACAACTATCTAAGCT
CAAACCTGCAAGAAGATATTTCCGCGATACTCGAAAATGATGAAACTGGT
GAATACCACCCTTCAATTATGACACAGGTTGATGACGATGGCGCTTTCAC
TCTGCCTCTTTCTTTCTATGAGGAGATTGAAAAATATCTTAGCTCCAATC
CAGAAGAAGATGTTTCAACGATTTTAAGAGAGGATCAGAGTAATGAATTT
AATCCTTTGACATTCTTTGAGTTTTACAAAGATGAAAAAGAAGCAAAGGA
GACGGACCCATCAATGGAGCATCTTCTCTGTCACAAAACGTTTGGGGAGA
TGACCGAACTCAAAATGCATACCAGCCCATGTGCTTGTGATTCTCGGAAT
TGTACATGTCTTGGCCATTTGTAA
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protein sequence of Gvermi7687.t1

>Gvermi7687.t1 ID=Gvermi7687.t1|Name=Gvermi7687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=158bp
MSNLSKTPENKSAKTSPELKSVIDFDEIDNYLSSNLQEDISAILENDETG
EYHPSIMTQVDDDGAFTLPLSFYEEIEKYLSSNPEEDVSTILREDQSNEF
NPLTFFEFYKDEKEAKETDPSMEHLLCHKTFGEMTELKMHTSPCACDSRN
CTCLGHL*
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mRNA from alignment at ScGOVlb_64:2415252..2415725+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7687.t1 ID=Gvermi7687.t1|Name=Gvermi7687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_64:2415252..2415725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCAATCTCAGCAAAACACCCGAAAACAAATCAGCAAAGACTTCGCC
TGAGTTGAAATCAGTTATTGATTTTGACGAGATAGACAACTATCTAAGCT
CAAACCTGCAAGAAGATATTTCCGCGATACTCGAAAATGATGAAACTGGT
GAATACCACCCTTCAATTATGACACAGGTTGATGACGATGGCGCTTTCAC
TCTGCCTCTTTCTTTCTATGAGGAGATTGAAAAATATCTTAGCTCCAATC
CAGAAGAAGATGTTTCAACGATTTTAAGAGAGGATCAGAGTAATGAATTT
AATCCTTTGACATTCTTTGAGTTTTACAAAGATGAAAAAGAAGCAAAGGA
GACGGACCCATCAATGGAGCATCTTCTCTGTCACAAAACGTTTGGGGAGA
TGACCGAACTCAAAATGCATACCAGCCCATGTGCTTGTGATTCTCGGAAT
TGTACATGTCTTGGCCATTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2415252..2415725+

>Gvermi7687.t1 ID=Gvermi7687.t1|Name=Gvermi7687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=474bp|location=Sequence derived from alignment at ScGOVlb_64:2415252..2415725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCAATCTCAGCAAAACACCCGAAAACAAATCAGCAAAGACTTCGCC
TGAGTTGAAATCAGTTATTGATTTTGACGAGATAGACAACTATCTAAGCT
CAAACCTGCAAGAAGATATTTCCGCGATACTCGAAAATGATGAAACTGGT
GAATACCACCCTTCAATTATGACACAGGTTGATGACGATGGCGCTTTCAC
TCTGCCTCTTTCTTTCTATGAGGAGATTGAAAAATATCTTAGCTCCAATC
CAGAAGAAGATGTTTCAACGATTTTAAGAGAGGATCAGAGTAATGAATTT
AATCCTTTGACATTCTTTGAGTTTTACAAAGATGAAAAAGAAGCAAAGGA
GACGGACCCATCAATGGAGCATCTTCTCTGTCACAAAACGTTTGGGGAGA
TGACCGAACTCAAAATGCATACCAGCCCATGTGCTTGTGATTCTCGGAAT
TGTACATGTCTTGGCCATTTGTAA
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