Gvermi7685.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7685.t1
Unique NameGvermi7685.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2369390..2370285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7237.FBpp0273891
PFAMsRVT_1,Retrotrans_gag,rve,zf-H2C2
Max annot lvl33208|Metazoa
Evalue9e-36
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7685Gvermi7685Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2369390..2370285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1Gvermi7685.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2369390..2370285 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1.start1Gvermi7685.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2369390..2369392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1.CDS1Gvermi7685.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2369390..2369781 +
Gvermi7685.t1.CDS2Gvermi7685.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2369883..2370285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1.exon1Gvermi7685.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2369390..2369781 +
Gvermi7685.t1.exon2Gvermi7685.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2369883..2370285 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1.intron1Gvermi7685.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2369782..2369882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7685.t1.stop1Gvermi7685.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2370283..2370285 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7685.t1 ID=Gvermi7685.t1|Name=Gvermi7685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MPIGFWSRSLNVHERNYSVPEKECLAVVWALQTLRPYLMGSHFVVHTNHS
ALRWLLSIAEPSGRLMRWRLRLAEFTLDVQYKKRTLNTQADAFSRFPTAA
EAKPDDDLRKTVIMKPKAIRKVETSAMQYWPRINGGAQLPFVEDDKGFLV
RTVSARPQIVVPHSLQSRLLRLSHYAKLSAHPGGRKMYYTLRRDFYWPVM
AIDAYATVRGCTDCAKNRVKLRKYAKELVLFPARAPLEFVAIDILGELRT
CPNSSGEPLPAGHH*
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spliced messenger RNA

>Gvermi7685.t1 ID=Gvermi7685.t1|Name=Gvermi7685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_64:2369390..2370285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccaattgggttttggtctcgaagcctcaacgttcacgagaggaatta
ttcagtccccgagaaggagtgtcttgcagtggtctgggccctgcagacgt
tgagaccctacttgatgggcagtcactttgtagtgcataccaatcattcg
gcccttcgatggctgctttctattgcagaaccatctggccgcttgatgcg
gtggcgccttcgtctggcggagttcacgttagacgtgcaatacaagaaac
ggaccctgaatacccaggccgatgccttttctcgcttcccaacagcggcc
gaagcaaagccagacgatgacctgcggaagacggtcataatgaagccgaa
agcgattcggaaggttgagacatctgcgatgcagtactggccccgtatca
acggtggagcgcagctgcccttcgtcgaggacgacaagggatttctagtc
cgaacagtctcggcccgaccacaaatcgtggtgccgcactcgcttcaatc
gcgattattgcgcttgtcgcattatgcaaagttgtcagcccaccctgggg
gtcggaagatgtattacaccctcaggagggacttttactggcccgtaatg
gcgatcgatgcatatgcgaccgttcgaggatgtacggactgcgcgaaaaa
ccgcgtcaagctaaggaagtacgccaaggaactggtcttgttcccagctc
gagccccactagagtttgtcgctattgacatcctcggggaacttagaact
tgtccgaactcgtcgggggaaccgcttcctgctggtcatcactga
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protein sequence of Gvermi7685.t1

>Gvermi7685.t1 ID=Gvermi7685.t1|Name=Gvermi7685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MPIGFWSRSLNVHERNYSVPEKECLAVVWALQTLRPYLMGSHFVVHTNHS
ALRWLLSIAEPSGRLMRWRLRLAEFTLDVQYKKRTLNTQADAFSRFPTAA
EAKPDDDLRKTVIMKPKAIRKVETSAMQYWPRINGGAQLPFVEDDKGFLV
RTVSARPQIVVPHSLQSRLLRLSHYAKLSAHPGGRKMYYTLRRDFYWPVM
AIDAYATVRGCTDCAKNRVKLRKYAKELVLFPARAPLEFVAIDILGELRT
CPNSSGEPLPAGHH*
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mRNA from alignment at ScGOVlb_64:2369390..2370285+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7685.t1 ID=Gvermi7685.t1|Name=Gvermi7685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=896bp|location=Sequence derived from alignment at ScGOVlb_64:2369390..2370285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgccaattgggttttggtctcgaagcctcaacgttcacgagaggaatta
ttcagtccccgagaaggagtgtcttgcagtggtctgggccctgcagacgt
tgagaccctacttgatgggcagtcactttgtagtgcataccaatcattcg
gcccttcgatggctgctttctattgcagaaccatctggccgcttgatgcg
gtggcgccttcgtctggcggagttcacgttagacgtgcaatacaagaaac
ggaccctgaatacccaggccgatgccttttctcgcttcccaacagcggcc
gaagcaaagccagacgatgacctgcggaagacggtcataatgaagccgaa
agcgattcggaaggttgagacatctgcgatgcagtactggccgtttcaga
cacggactctgtactgggatcctctgtcccggtcacgccggaagaattac
tccgggagcagcacacggacccgttatgtcgggagatttgtagccgtatc
aacggtggagcgcagctgcccttcgtcgaggacgacaagggatttctagt
ccgaacagtctcggcccgaccacaaatcgtggtgccgcactcgcttcaat
cgcgattattgcgcttgtcgcattatgcaaagttgtcagcccaccctggg
ggtcggaagatgtattacaccctcaggagggacttttactggcccgtaat
ggcgatcgatgcatatgcgaccgttcgaggatgtacggactgcgcgaaaa
accgcgtcaagctaaggaagtacgccaaggaactggtcttgttcccagct
cgagccccactagagtttgtcgctattgacatcctcggggaacttagaac
ttgtccgaactcgtcgggggaaccgcttcctgctggtcatcactga
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Coding sequence (CDS) from alignment at ScGOVlb_64:2369390..2370285+

>Gvermi7685.t1 ID=Gvermi7685.t1|Name=Gvermi7685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_64:2369390..2370285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgccaattgggttttggtctcgaagcctcaacgttcacgagaggaatta
ttcagtccccgagaaggagtgtcttgcagtggtctgggccctgcagacgt
tgagaccctacttgatgggcagtcactttgtagtgcataccaatcattcg
gcccttcgatggctgctttctattgcagaaccatctggccgcttgatgcg
gtggcgccttcgtctggcggagttcacgttagacgtgcaatacaagaaac
ggaccctgaatacccaggccgatgccttttctcgcttcccaacagcggcc
gaagcaaagccagacgatgacctgcggaagacggtcataatgaagccgaa
agcgattcggaaggttgagacatctgcgatgcagtactggccccgtatca
acggtggagcgcagctgcccttcgtcgaggacgacaagggatttctagtc
cgaacagtctcggcccgaccacaaatcgtggtgccgcactcgcttcaatc
gcgattattgcgcttgtcgcattatgcaaagttgtcagcccaccctgggg
gtcggaagatgtattacaccctcaggagggacttttactggcccgtaatg
gcgatcgatgcatatgcgaccgttcgaggatgtacggactgcgcgaaaaa
ccgcgtcaagctaaggaagtacgccaaggaactggtcttgttcccagctc
gagccccactagagtttgtcgctattgacatcctcggggaacttagaact
tgtccgaactcgtcgggggaaccgcttcctgctggtcatcactga
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