Gvermi7098.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7098.t1
Unique NameGvermi7098.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1636862..1638190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR298CT
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K03686
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue2.94e-144
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7098Gvermi7098Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1636862..1638190 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7098.t1.stop1Gvermi7098.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1636862..1636864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7098.t1.CDS1Gvermi7098.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1636862..1638190 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7098.t1.exon1Gvermi7098.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1636862..1638190 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7098.t1.start1Gvermi7098.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1638188..1638190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7098.t1Gvermi7098.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1636862..1638190 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7098.t1 ID=Gvermi7098.t1|Name=Gvermi7098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=443bp
MSTASAPAFTASTPLSTRRPATTFYSPLSAPRLSRKVPLPLRSRRVFVPC
ASGDYYQTLGISRNATEKEIKTAFRQKARKLHPDVNKAPDAKERFQEVSR
AYEVLSDSNLRQRYDQFGEAGVKGASQPGFGDFTSQDFGSFSDIFDTFFG
GGQTSARGRRRSGPQPGDDLRLDVDIPFETAVFGAEQKIRFSHLETCSTC
SGSGVKPGKKPKSCSSCEGSGSVTQVVRTPLGMFQQTTTCTTCRGTGEVV
EDFCGSCGGRGRNQVTKQLQITIPAGVDSGSRLRVRNEGDAGAKGGPPGD
LYVVLRVKDSSDFSREGTNIYSKISVSYLDAILGRSVPVKTVDGIVDLKI
SAGTQPGSVQRIDGKGVPKLGNSTVRGDHFVTVNVKIPTRLNSDERKLIQ
KLDELSSGSAGKNGKATAGASSEKSKKTSKKSEGFFNFGKKK*
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spliced messenger RNA

>Gvermi7098.t1 ID=Gvermi7098.t1|Name=Gvermi7098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24229:1636862..1638190- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCGCAAGCGCCCCCGCGTTCACTGCGTCAACCCCACTCTCCAC
ACGCAGGCCGGCTACAACCTTTTACTCACCGCTCTCCGCCCCCCGCCTGT
CACGAAAGGTTCCACTTCCGCTCCGCTCGCGTCGAGTCTTCGTGCCTTGC
GCGTCTGGCGACTATTACCAGACATTAGGCATTTCCCGTAATGCTACGGA
AAAGGAAATCAAAACAGCCTTCCGTCAAAAGGCACGCAAGCTTCATCCCG
ATGTGAATAAAGCACCTGATGCTAAAGAACGGTTTCAGGAAGTTTCTCGC
GCATACGAGGTGCTTTCGGATTCCAATTTGCGGCAAAGGTATGACCAATT
TGGGGAGGCCGGTGTAAAGGGCGCTTCCCAACCAGGCTTTGGTGACTTCA
CTTCTCAAGACTTTGGAAGCTTTTCAGATATTTTCGACACATTCTTTGGC
GGCGGTCAGACGAGTGCTCGTGGGAGACGCAGATCTGGGCCACAGCCAGG
GGATGACTTGCGTTTAGATGTTGACATCCCGTTCGAGACTGCCGTGTTTG
GGGCTGAGCAGAAGATTCGCTTCTCTCATTTAGAGACATGCTCCACGTGC
TCTGGAAGTGGGGTTAAGCCTGGTAAGAAACCGAAAAGCTGCTCCTCTTG
CGAGGGCTCCGGTTCTGTAACCCAGGTTGTGCGAACTCCACTGGGAATGT
TTCAACAGACAACCACATGCACGACGTGTCGCGGAACTGGGGAAGTTGTA
GAAGACTTTTGCGGTTCGTGTGGAGGCAGGGGTAGAAATCAGGTCACCAA
GCAGCTTCAAATTACTATTCCTGCAGGTGTAGATTCTGGTAGCAGGCTTC
GCGTGAGAAATGAGGGTGATGCTGGAGCTAAGGGTGGGCCTCCCGGAGAC
CTCTATGTTGTTCTGAGGGTCAAGGACTCGTCTGACTTCTCAAGAGAGGG
AACAAATATTTATTCTAAGATTTCTGTCTCATATCTCGACGCCATTCTTG
GTCGGAGTGTTCCAGTGAAGACTGTTGATGGTATCGTGGACTTGAAAATT
TCTGCTGGTACTCAACCTGGTTCCGTGCAAAGAATCGACGGCAAAGGCGT
TCCGAAGCTGGGTAATTCAACGGTACGTGGTGATCACTTTGTCACCGTCA
ACGTGAAGATCCCGACGAGATTGAATAGTGATGAGAGAAAGCTTATTCAG
AAGTTGGATGAACTTTCTTCTGGGAGTGCTGGAAAGAACGGAAAAGCCAC
AGCCGGCGCATCCAGTGAAAAGTCGAAGAAGACCAGCAAGAAAAGTGAAG
GATTTTTCAACTTTGGGAAGAAAAAGTGA
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protein sequence of Gvermi7098.t1

>Gvermi7098.t1 ID=Gvermi7098.t1|Name=Gvermi7098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=443bp
MSTASAPAFTASTPLSTRRPATTFYSPLSAPRLSRKVPLPLRSRRVFVPC
ASGDYYQTLGISRNATEKEIKTAFRQKARKLHPDVNKAPDAKERFQEVSR
AYEVLSDSNLRQRYDQFGEAGVKGASQPGFGDFTSQDFGSFSDIFDTFFG
GGQTSARGRRRSGPQPGDDLRLDVDIPFETAVFGAEQKIRFSHLETCSTC
SGSGVKPGKKPKSCSSCEGSGSVTQVVRTPLGMFQQTTTCTTCRGTGEVV
EDFCGSCGGRGRNQVTKQLQITIPAGVDSGSRLRVRNEGDAGAKGGPPGD
LYVVLRVKDSSDFSREGTNIYSKISVSYLDAILGRSVPVKTVDGIVDLKI
SAGTQPGSVQRIDGKGVPKLGNSTVRGDHFVTVNVKIPTRLNSDERKLIQ
KLDELSSGSAGKNGKATAGASSEKSKKTSKKSEGFFNFGKKK*
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mRNA from alignment at ScGOVlb_24229:1636862..1638190-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7098.t1 ID=Gvermi7098.t1|Name=Gvermi7098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24229:1636862..1638190- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGCAAGCGCCCCCGCGTTCACTGCGTCAACCCCACTCTCCAC
ACGCAGGCCGGCTACAACCTTTTACTCACCGCTCTCCGCCCCCCGCCTGT
CACGAAAGGTTCCACTTCCGCTCCGCTCGCGTCGAGTCTTCGTGCCTTGC
GCGTCTGGCGACTATTACCAGACATTAGGCATTTCCCGTAATGCTACGGA
AAAGGAAATCAAAACAGCCTTCCGTCAAAAGGCACGCAAGCTTCATCCCG
ATGTGAATAAAGCACCTGATGCTAAAGAACGGTTTCAGGAAGTTTCTCGC
GCATACGAGGTGCTTTCGGATTCCAATTTGCGGCAAAGGTATGACCAATT
TGGGGAGGCCGGTGTAAAGGGCGCTTCCCAACCAGGCTTTGGTGACTTCA
CTTCTCAAGACTTTGGAAGCTTTTCAGATATTTTCGACACATTCTTTGGC
GGCGGTCAGACGAGTGCTCGTGGGAGACGCAGATCTGGGCCACAGCCAGG
GGATGACTTGCGTTTAGATGTTGACATCCCGTTCGAGACTGCCGTGTTTG
GGGCTGAGCAGAAGATTCGCTTCTCTCATTTAGAGACATGCTCCACGTGC
TCTGGAAGTGGGGTTAAGCCTGGTAAGAAACCGAAAAGCTGCTCCTCTTG
CGAGGGCTCCGGTTCTGTAACCCAGGTTGTGCGAACTCCACTGGGAATGT
TTCAACAGACAACCACATGCACGACGTGTCGCGGAACTGGGGAAGTTGTA
GAAGACTTTTGCGGTTCGTGTGGAGGCAGGGGTAGAAATCAGGTCACCAA
GCAGCTTCAAATTACTATTCCTGCAGGTGTAGATTCTGGTAGCAGGCTTC
GCGTGAGAAATGAGGGTGATGCTGGAGCTAAGGGTGGGCCTCCCGGAGAC
CTCTATGTTGTTCTGAGGGTCAAGGACTCGTCTGACTTCTCAAGAGAGGG
AACAAATATTTATTCTAAGATTTCTGTCTCATATCTCGACGCCATTCTTG
GTCGGAGTGTTCCAGTGAAGACTGTTGATGGTATCGTGGACTTGAAAATT
TCTGCTGGTACTCAACCTGGTTCCGTGCAAAGAATCGACGGCAAAGGCGT
TCCGAAGCTGGGTAATTCAACGGTACGTGGTGATCACTTTGTCACCGTCA
ACGTGAAGATCCCGACGAGATTGAATAGTGATGAGAGAAAGCTTATTCAG
AAGTTGGATGAACTTTCTTCTGGGAGTGCTGGAAAGAACGGAAAAGCCAC
AGCCGGCGCATCCAGTGAAAAGTCGAAGAAGACCAGCAAGAAAAGTGAAG
GATTTTTCAACTTTGGGAAGAAAAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1636862..1638190-

>Gvermi7098.t1 ID=Gvermi7098.t1|Name=Gvermi7098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24229:1636862..1638190- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGCAAGCGCCCCCGCGTTCACTGCGTCAACCCCACTCTCCAC
ACGCAGGCCGGCTACAACCTTTTACTCACCGCTCTCCGCCCCCCGCCTGT
CACGAAAGGTTCCACTTCCGCTCCGCTCGCGTCGAGTCTTCGTGCCTTGC
GCGTCTGGCGACTATTACCAGACATTAGGCATTTCCCGTAATGCTACGGA
AAAGGAAATCAAAACAGCCTTCCGTCAAAAGGCACGCAAGCTTCATCCCG
ATGTGAATAAAGCACCTGATGCTAAAGAACGGTTTCAGGAAGTTTCTCGC
GCATACGAGGTGCTTTCGGATTCCAATTTGCGGCAAAGGTATGACCAATT
TGGGGAGGCCGGTGTAAAGGGCGCTTCCCAACCAGGCTTTGGTGACTTCA
CTTCTCAAGACTTTGGAAGCTTTTCAGATATTTTCGACACATTCTTTGGC
GGCGGTCAGACGAGTGCTCGTGGGAGACGCAGATCTGGGCCACAGCCAGG
GGATGACTTGCGTTTAGATGTTGACATCCCGTTCGAGACTGCCGTGTTTG
GGGCTGAGCAGAAGATTCGCTTCTCTCATTTAGAGACATGCTCCACGTGC
TCTGGAAGTGGGGTTAAGCCTGGTAAGAAACCGAAAAGCTGCTCCTCTTG
CGAGGGCTCCGGTTCTGTAACCCAGGTTGTGCGAACTCCACTGGGAATGT
TTCAACAGACAACCACATGCACGACGTGTCGCGGAACTGGGGAAGTTGTA
GAAGACTTTTGCGGTTCGTGTGGAGGCAGGGGTAGAAATCAGGTCACCAA
GCAGCTTCAAATTACTATTCCTGCAGGTGTAGATTCTGGTAGCAGGCTTC
GCGTGAGAAATGAGGGTGATGCTGGAGCTAAGGGTGGGCCTCCCGGAGAC
CTCTATGTTGTTCTGAGGGTCAAGGACTCGTCTGACTTCTCAAGAGAGGG
AACAAATATTTATTCTAAGATTTCTGTCTCATATCTCGACGCCATTCTTG
GTCGGAGTGTTCCAGTGAAGACTGTTGATGGTATCGTGGACTTGAAAATT
TCTGCTGGTACTCAACCTGGTTCCGTGCAAAGAATCGACGGCAAAGGCGT
TCCGAAGCTGGGTAATTCAACGGTACGTGGTGATCACTTTGTCACCGTCA
ACGTGAAGATCCCGACGAGATTGAATAGTGATGAGAGAAAGCTTATTCAG
AAGTTGGATGAACTTTCTTCTGGGAGTGCTGGAAAGAACGGAAAAGCCAC
AGCCGGCGCATCCAGTGAAAAGTCGAAGAAGACCAGCAAGAAAAGTGAAG
GATTTTTCAACTTTGGGAAGAAAAAGTGA
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