Gvermi7092.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7092.t1
Unique NameGvermi7092.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1629932..1630309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703176.1
Preferred nameNFYB
PFAMsCBFD_NFYB_HMF
Max annot lvl2759|Eukaryota
KEGG koko:K08065,ko:K14799
KEGG Pathwayko04612,ko05152,ko05166,map04612,map05152,map05166
GOsGO:0000976,GO:0000981,GO:0001067,GO:0001654,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007423,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0016070,GO:0016602,GO:0018130,GO:0019216,GO:0019218,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022008,GO:0022603,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0044877,GO:0045540,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045676,GO:0045678,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0046532,GO:0046534,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0062012,GO:0065007,GO:0070013,GO:0070491,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090181,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0106118,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902531,GO:1902533,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000027,GO:2000112,GO:2001141
Evalue3.95e-56
EggNOG OGsCOG2036@1|root,KOG0869@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryK
BRITEko00000,ko00001,ko03000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7092Gvermi7092Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1629932..1630309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7092.t1.stop1Gvermi7092.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1629932..1629934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7092.t1.CDS1Gvermi7092.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1629932..1630309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7092.t1.exon1Gvermi7092.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1629932..1630309 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7092.t1.start1Gvermi7092.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1630307..1630309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7092.t1Gvermi7092.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1629932..1630309 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7092.t1 ID=Gvermi7092.t1|Name=Gvermi7092.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=126bp
MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQEC
VSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIDPLKHYLA
RFRETVMQEKGEDTKNTEANKQAST*
back to top

spliced messenger RNA

>Gvermi7092.t1 ID=Gvermi7092.t1|Name=Gvermi7092.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp|location=Sequence derived from alignment at ScGOVlb_24229:1629932..1630309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAACGCAAAACGAGGAGCCGGATCAGGGCGTGCGCGAGCAAGA
CCGCTTCCTGCCCACCGCCAACATCGCGCGCATCATGAAGAAGGCGCTGC
CGGGCAATGCCAAGGTTGCCAAGGACGGCAAGGACACCGTGCAGGAATGC
GTGTCCGAATTCGTCAGTTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
AAGGGAGAAGAGGAAGACCATCAACGGCGACGACATATTGTGGGCAATGA
GCACACTGGGCTTCGACAAGTACATCGACCCGCTGAAGCACTACCTCGCC
CGCTTTCGAGAAACCGTCATGCAGGAGAAGGGGGAGGACACCAAGAATAC
CGAAGCCAATAAACAGGCCTCTACCTAA
back to top

protein sequence of Gvermi7092.t1

>Gvermi7092.t1 ID=Gvermi7092.t1|Name=Gvermi7092.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=126bp
MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQEC
VSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIDPLKHYLA
RFRETVMQEKGEDTKNTEANKQAST*
back to top

mRNA from alignment at ScGOVlb_24229:1629932..1630309-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7092.t1 ID=Gvermi7092.t1|Name=Gvermi7092.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp|location=Sequence derived from alignment at ScGOVlb_24229:1629932..1630309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAAACGCAAAACGAGGAGCCGGATCAGGGCGTGCGCGAGCAAGA
CCGCTTCCTGCCCACCGCCAACATCGCGCGCATCATGAAGAAGGCGCTGC
CGGGCAATGCCAAGGTTGCCAAGGACGGCAAGGACACCGTGCAGGAATGC
GTGTCCGAATTCGTCAGTTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
AAGGGAGAAGAGGAAGACCATCAACGGCGACGACATATTGTGGGCAATGA
GCACACTGGGCTTCGACAAGTACATCGACCCGCTGAAGCACTACCTCGCC
CGCTTTCGAGAAACCGTCATGCAGGAGAAGGGGGAGGACACCAAGAATAC
CGAAGCCAATAAACAGGCCTCTACCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1629932..1630309-

>Gvermi7092.t1 ID=Gvermi7092.t1|Name=Gvermi7092.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=378bp|location=Sequence derived from alignment at ScGOVlb_24229:1629932..1630309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAAACGCAAAACGAGGAGCCGGATCAGGGCGTGCGCGAGCAAGA
CCGCTTCCTGCCCACCGCCAACATCGCGCGCATCATGAAGAAGGCGCTGC
CGGGCAATGCCAAGGTTGCCAAGGACGGCAAGGACACCGTGCAGGAATGC
GTGTCCGAATTCGTCAGTTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
AAGGGAGAAGAGGAAGACCATCAACGGCGACGACATATTGTGGGCAATGA
GCACACTGGGCTTCGACAAGTACATCGACCCGCTGAAGCACTACCTCGCC
CGCTTTCGAGAAACCGTCATGCAGGAGAAGGGGGAGGACACCAAGAATAC
CGAAGCCAATAAACAGGCCTCTACCTAA
back to top