Gvermi7088.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7088.t1
Unique NameGvermi7088.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1568246..1569122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704541.1
PFAMsPEP_mutase
Max annot lvl2759|Eukaryota
KEGG rclassRC00286,RC00287
KEGG koko:K03417
KEGG ReactionR00409
KEGG Pathwayko00640,map00640
Evalue5.42e-102
EggNOG OGsCOG2513@1|root,KOG1260@2759|Eukaryota
EC4.1.3.30
Descriptionisocitrate lyase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7088Gvermi7088Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1568246..1569122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1Gvermi7088.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1568246..1569122 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1.stop1Gvermi7088.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1568246..1568248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1.CDS1Gvermi7088.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1568246..1568762 -
Gvermi7088.t1.CDS2Gvermi7088.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1568827..1569122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1.exon1Gvermi7088.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1568246..1568762 -
Gvermi7088.t1.exon2Gvermi7088.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1568827..1569122 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1.intron1Gvermi7088.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1568763..1568826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7088.t1.start1Gvermi7088.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1569120..1569122 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7088.t1 ID=Gvermi7088.t1|Name=Gvermi7088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MPCCGDGLSAKLIQRAKFDLTFMSGFSTAGFKGLPDTGLLGYKEMLENVA
EVSDVIDIPLIADADTGFGNAVNVRRTVMGFAKAGASGLLIEDQVNPKRC
GHTKGKEVVDRDEAVRRIRAACDARDEVADGDGGPVIIARTDAGRSSFEE
ALTRARLFHEIGADMTFVEAPQSVEQMQTYCQSIPGLKLANMLEMGDTPI
LPPEELFNIGYSIAAYPLTLLSATVKAQEAALAKLREGVPEQVRPLLKTF
AELRDVVGFPSYYNTEDRYK*
back to top

spliced messenger RNA

>Gvermi7088.t1 ID=Gvermi7088.t1|Name=Gvermi7088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_24229:1568246..1569122- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGCTGCGGCGATGGTCTCTCAGCCAAACTTATACAAAGAGCAAA
ATTTGACCTTACGTTCATGTCTGGCTTCTCAACCGCCGGCTTCAAGGGCC
TCCCAGACACAGGTCTTCTCGGCTACAAAGAAATGTTAGAGAATGTGGCG
GAAGTATCCGATGTCATTGATATCCCCCTTATTGCGGATGCAGATACGGG
ATTCGGAAACGCAGTTAATGTTCGTCGTACCGTCATGGGTTTTGCTAAGG
CTGGAGCGTCAGGTCTACTTATTGAGGATCAAGTTAATCCAAAGAGATGC
GGTCATACCAAAGGAAAAGAAGTCGTTGATAGAGATGAGGCCGTGCGCCG
AATCCGTGCCGCCTGTGATGCCCGAGATGAGGTTGCTGACGGCGATGGAG
GTCCAGTTATCATCGCCCGAACAGACGCTGGACGTTCTAGTTTCGAGGAA
GCGCTGACTCGAGCTCGTCTTTTCCACGAAATCGGAGCTGATATGACATT
TGTTGAAGCACCTCAAAGCGTAGAGCAAATGCAAACATACTGCCAGTCCA
TTCCAGGCTTAAAACTAGCCAACATGCTTGAGATGGGAGACACCCCGATC
CTTCCACCAGAGGAACTGTTTAACATAGGCTATTCTATTGCTGCATATCC
GCTCACGCTCCTGAGTGCTACGGTCAAAGCGCAAGAAGCCGCGCTTGCAA
AGCTAAGAGAAGGGGTGCCAGAACAAGTTCGACCGCTGCTCAAGACATTT
GCCGAGTTGCGTGATGTGGTTGGTTTCCCCAGCTATTATAACACTGAGGA
CAGGTACAAGTGA
back to top

protein sequence of Gvermi7088.t1

>Gvermi7088.t1 ID=Gvermi7088.t1|Name=Gvermi7088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MPCCGDGLSAKLIQRAKFDLTFMSGFSTAGFKGLPDTGLLGYKEMLENVA
EVSDVIDIPLIADADTGFGNAVNVRRTVMGFAKAGASGLLIEDQVNPKRC
GHTKGKEVVDRDEAVRRIRAACDARDEVADGDGGPVIIARTDAGRSSFEE
ALTRARLFHEIGADMTFVEAPQSVEQMQTYCQSIPGLKLANMLEMGDTPI
LPPEELFNIGYSIAAYPLTLLSATVKAQEAALAKLREGVPEQVRPLLKTF
AELRDVVGFPSYYNTEDRYK*
back to top

mRNA from alignment at ScGOVlb_24229:1568246..1569122-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7088.t1 ID=Gvermi7088.t1|Name=Gvermi7088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=877bp|location=Sequence derived from alignment at ScGOVlb_24229:1568246..1569122- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTGCTGCGGCGATGGTCTCTCAGCCAAACTTATACAAAGAGCAAA
ATTTGACCTTACGTTCATGTCTGGCTTCTCAACCGCCGGCTTCAAGGGCC
TCCCAGACACAGGTCTTCTCGGCTACAAAGAAATGTTAGAGAATGTGGCG
GAAGTATCCGATGTCATTGATATCCCCCTTATTGCGGATGCAGATACGGG
ATTCGGAAACGCAGTTAATGTTCGTCGTACCGTCATGGGTTTTGCTAAGG
CTGGAGCGTCAGGTCTACTTATTGAGGATCAAGTTAATCCAAAGAGGTAA
TGTGTATAGAAACTCGTGCTTCTTCTTCTTCTTGGAATTTCTAACTCAGC
TCGTCTATAGATGCGGTCATACCAAAGGAAAAGAAGTCGTTGATAGAGAT
GAGGCCGTGCGCCGAATCCGTGCCGCCTGTGATGCCCGAGATGAGGTTGC
TGACGGCGATGGAGGTCCAGTTATCATCGCCCGAACAGACGCTGGACGTT
CTAGTTTCGAGGAAGCGCTGACTCGAGCTCGTCTTTTCCACGAAATCGGA
GCTGATATGACATTTGTTGAAGCACCTCAAAGCGTAGAGCAAATGCAAAC
ATACTGCCAGTCCATTCCAGGCTTAAAACTAGCCAACATGCTTGAGATGG
GAGACACCCCGATCCTTCCACCAGAGGAACTGTTTAACATAGGCTATTCT
ATTGCTGCATATCCGCTCACGCTCCTGAGTGCTACGGTCAAAGCGCAAGA
AGCCGCGCTTGCAAAGCTAAGAGAAGGGGTGCCAGAACAAGTTCGACCGC
TGCTCAAGACATTTGCCGAGTTGCGTGATGTGGTTGGTTTCCCCAGCTAT
TATAACACTGAGGACAGGTACAAGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1568246..1569122-

>Gvermi7088.t1 ID=Gvermi7088.t1|Name=Gvermi7088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_24229:1568246..1569122- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTGCTGCGGCGATGGTCTCTCAGCCAAACTTATACAAAGAGCAAA
ATTTGACCTTACGTTCATGTCTGGCTTCTCAACCGCCGGCTTCAAGGGCC
TCCCAGACACAGGTCTTCTCGGCTACAAAGAAATGTTAGAGAATGTGGCG
GAAGTATCCGATGTCATTGATATCCCCCTTATTGCGGATGCAGATACGGG
ATTCGGAAACGCAGTTAATGTTCGTCGTACCGTCATGGGTTTTGCTAAGG
CTGGAGCGTCAGGTCTACTTATTGAGGATCAAGTTAATCCAAAGAGATGC
GGTCATACCAAAGGAAAAGAAGTCGTTGATAGAGATGAGGCCGTGCGCCG
AATCCGTGCCGCCTGTGATGCCCGAGATGAGGTTGCTGACGGCGATGGAG
GTCCAGTTATCATCGCCCGAACAGACGCTGGACGTTCTAGTTTCGAGGAA
GCGCTGACTCGAGCTCGTCTTTTCCACGAAATCGGAGCTGATATGACATT
TGTTGAAGCACCTCAAAGCGTAGAGCAAATGCAAACATACTGCCAGTCCA
TTCCAGGCTTAAAACTAGCCAACATGCTTGAGATGGGAGACACCCCGATC
CTTCCACCAGAGGAACTGTTTAACATAGGCTATTCTATTGCTGCATATCC
GCTCACGCTCCTGAGTGCTACGGTCAAAGCGCAAGAAGCCGCGCTTGCAA
AGCTAAGAGAAGGGGTGCCAGAACAAGTTCGACCGCTGCTCAAGACATTT
GCCGAGTTGCGTGATGTGGTTGGTTTCCCCAGCTATTATAACACTGAGGA
CAGGTACAAGTGA
back to top